Cucsa.252850 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.252850
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02229 : 1691817 .. 1692419 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTCATCTTCTTCATTTTCTATCCCCAAACCAAGAAAACCTAACCTTGAGAACACACAAAGTGCCATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAACCGTGAAGTTTGGAGTGATATGAGTGATATGGTAACTCTTTGTTTAATCCAAAGTGTATATTATATATGTATGTACGTATATTTCCATTTGGCCCTGTTGTTCTAGTTTCAATGTTTGTGTGAAGCAAGCTTGTAAAACTTATAATGGCTCTGCTTGTAATACAAAGTTATCAACTAAGAAACAAACTTTGCTATGCCTATTTGCAACTTTTCATTGTATGTTTCTTTGAAGTCTAATTGACAAGCAGAGTTGGAAACGAATGAAA

mRNA sequence

TGGTTCATCTTCTTCATTTTCTATCCCCAAACCAAGAAAACCTAACCTTGAGAACACACAAAGTGCCATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAACCGTGAAGTTTGGAGTGATATGAGTGATATGGTAACTCTTTGTTTAATCCAAAGTGTATATTATATATGTATGTACGTATATTTCCATTTGGCCCTGTTGTTCTAGTTTCAATGTTTGTGTGAAGCAAGCTTGTAAAACTTATAATGGCTCTGCTTGTAATACAAAGTTATCAACTAAGAAACAAACTTTGCTATGCCTATTTGCAACTTTTCATTGTATGTTTCTTTGAAGTCTAATTGACAAGCAGAGTTGGAAACGAATGAAA

Coding sequence (CDS)

ATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAA

Protein sequence

MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLAKAHGGIIIKEWGGKRVNKVVQKTERP*
Homology
[Close]
BLAST of Cucsa.252850 vs. TrEMBL
Match: A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60
          MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 90
          QLAKAHGGIIIKEWGGKRVNKVVQKTERP
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 89

[Close]
BLAST of Cucsa.252850 vs. TrEMBL
Match: A0A0A0L7Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.6e-16
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 6  NDLARIGLEGFIFIEELYDR--PRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLA 65
          NDL +IGLEGF  IEE+Y +  P+R+PR VA APPQ ++AIHPPQR  ESSP IRC+QLA
Sbjct: 10 NDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQLA 69

Query: 66 KAHGG 69
          K H G
Sbjct: 70 KTHEG 74

[Close]
BLAST of Cucsa.252850 vs. NCBI nr
Match: gi|700202002|gb|KGN57135.1| (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.7e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60
          MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 90
          QLAKAHGGIIIKEWGGKRVNKVVQKTERP
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 89

[Close]
BLAST of Cucsa.252850 vs. NCBI nr
Match: gi|700202001|gb|KGN57134.1| (hypothetical protein Csa_3G164530 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 6  NDLARIGLEGFIFIEELYDR--PRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLA 65
          NDL +IGLEGF  IEE+Y +  P+R+PR VA APPQ ++AIHPPQR  ESSP IRC+QLA
Sbjct: 10 NDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQLA 69

Query: 66 KAHGG 69
          K H G
Sbjct: 70 KTHEG 74

The following BLAST results are available for this feature:
BLAST of Cucsa.252850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5A8_CUCSA2.6e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1[more]
A0A0A0L7Z0_CUCSA8.6e-1666.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1[more]
BLAST of Cucsa.252850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202002|gb|KGN57135.1|3.7e-44100.00hypothetical protein Csa_3G164540 [Cucumis sativus][more]
gi|700202001|gb|KGN57134.1|1.2e-1566.15hypothetical protein Csa_3G164530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.252850.1Cucsa.252850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.252850Cla021761Watermelon (97103) v1cgywmB479
Cucsa.252850Csa3G164530Cucumber (Chinese Long) v2cgycuB366
Cucsa.252850MELO3C006685Melon (DHL92) v3.5.1cgymeB439
Cucsa.252850CSPI03G14650Wild cucumber (PI 183967)cgycpiB383
Cucsa.252850Lsi05G015600Bottle gourd (USVL1VR-Ls)cgylsiB420
Cucsa.252850MELO3C006685.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.252850CsaV3_3G014890Cucumber (Chinese Long) v3cgycucB387
Cucsa.252850Cla97C05G087830Watermelon (97103) v2cgywmbB452
Cucsa.252850Bhi01G000745Wax gourdcgywgoB522
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.252850Cucumber (Chinese Long) v3cgycucB382
Cucsa.252850Cucumber (Chinese Long) v3cgycucB396
Cucsa.252850Watermelon (97103) v2cgywmbB453
Cucsa.252850Wax gourdcgywgoB505
Cucsa.252850Cucumber (Gy14) v1cgycgyB020
Cucsa.252850Cucurbita maxima (Rimu)cgycmaB0713
Cucsa.252850Cucurbita maxima (Rimu)cgycmaB0714
Cucsa.252850Cucurbita maxima (Rimu)cgycmaB0706
Cucsa.252850Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.252850Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.252850Cucurbita maxima (Rimu)cgycmaB0731
Cucsa.252850Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.252850Cucurbita moschata (Rifu)cgycmoB0707
Cucsa.252850Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.252850Cucurbita moschata (Rifu)cgycmoB0720
Cucsa.252850Wild cucumber (PI 183967)cgycpiB390
Cucsa.252850Cucumber (Chinese Long) v2cgycuB371
Cucsa.252850Melon (DHL92) v3.5.1cgymeB430
Cucsa.252850Watermelon (Charleston Gray)cgywcgB451
Cucsa.252850Watermelon (Charleston Gray)cgywcgB453
Cucsa.252850Watermelon (97103) v1cgywmB483
Cucsa.252850Cucurbita pepo (Zucchini)cgycpeB0669
Cucsa.252850Cucurbita pepo (Zucchini)cgycpeB0671
Cucsa.252850Cucurbita pepo (Zucchini)cgycpeB0678
Cucsa.252850Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.252850Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.252850Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.252850Melon (DHL92) v3.6.1cgymedB425
Cucsa.252850Melon (DHL92) v3.6.1cgymedB427
Cucsa.252850Silver-seed gourdcarcgyB0083
Cucsa.252850Silver-seed gourdcarcgyB0133
Cucsa.252850Silver-seed gourdcarcgyB0329
Cucsa.252850Silver-seed gourdcarcgyB0788