Cucsa.252850.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.252850.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold02229 : 1691817 .. 1692419 (-)
Sequence length	603

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTCATCTTCTTCATTTTCTATCCCCAAACCAAGAAAACCTAACCTTGAGAACACACAAAGTGCCATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAACCGTGAAGTTTGGAGTGATATGAGTGATATGGTAACTCTTTGTTTAATCCAAAGTGTATATTATATATGTATGTACGTATATTTCCATTTGGCCCTGTTGTTCTAGTTTCAATGTTTGTGTGAAGCAAGCTTGTAAAACTTATAATGGCTCTGCTTGTAATACAAAGTTATCAACTAAGAAACAAACTTTGCTATGCCTATTTGCAACTTTTCATTGTATGTTTCTTTGAAGTCTAATTGACAAGCAGAGTTGGAAACGAATGAAA

mRNA sequence

TGGTTCATCTTCTTCATTTTCTATCCCCAAACCAAGAAAACCTAACCTTGAGAACACACAAAGTGCCATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAACCGTGAAGTTTGGAGTGATATGAGTGATATGGTAACTCTTTGTTTAATCCAAAGTGTATATTATATATGTATGTACGTATATTTCCATTTGGCCCTGTTGTTCTAGTTTCAATGTTTGTGTGAAGCAAGCTTGTAAAACTTATAATGGCTCTGCTTGTAATACAAAGTTATCAACTAAGAAACAAACTTTGCTATGCCTATTTGCAACTTTTCATTGTATGTTTCTTTGAAGTCTAATTGACAAGCAGAGTTGGAAACGAATGAAA

Coding sequence (CDS)

ATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAA

Protein sequence

MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLAKAHGGIIIKEWGGKRVNKVVQKTERP*

Homology

[Close]

BLAST of Cucsa.252850.1 vs. TrEMBL
Match: A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60
          MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 90
          QLAKAHGGIIIKEWGGKRVNKVVQKTERP
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 89

[Close]

BLAST of Cucsa.252850.1 vs. TrEMBL
Match: A0A0A0L7Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.6e-16
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 6  NDLARIGLEGFIFIEELYDR--PRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLA 65
          NDL +IGLEGF  IEE+Y +  P+R+PR VA APPQ ++AIHPPQR  ESSP IRC+QLA
Sbjct: 10 NDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQLA 69

Query: 66 KAHGG 69
          K H G
Sbjct: 70 KTHEG 74

[Close]

BLAST of Cucsa.252850.1 vs. NCBI nr
Match: gi|700202002|gb|KGN57135.1| (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.7e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60
          MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 90
          QLAKAHGGIIIKEWGGKRVNKVVQKTERP
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVVQKTERP 89

[Close]

BLAST of Cucsa.252850.1 vs. NCBI nr
Match: gi|700202001|gb|KGN57134.1| (hypothetical protein Csa_3G164530 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 6  NDLARIGLEGFIFIEELYDR--PRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLA 65
          NDL +IGLEGF  IEE+Y +  P+R+PR VA APPQ ++AIHPPQR  ESSP IRC+QLA
Sbjct: 10 NDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQLA 69

Query: 66 KAHGG 69
          K H G
Sbjct: 70 KTHEG 74

The following BLAST results are available for this feature:

BLAST of Cucsa.252850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5A8_CUCSA	2.6e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1	[more]
A0A0A0L7Z0_CUCSA	8.6e-16	66.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1	[more]

BLAST of Cucsa.252850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202002\|gb\|KGN57135.1\|	3.7e-44	100.00	hypothetical protein Csa_3G164540 [Cucumis sativus]	[more]
gi\|700202001\|gb\|KGN57134.1\|	1.2e-15	66.15	hypothetical protein Csa_3G164530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.252850	Cucsa.252850	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.252850.1	Cucsa.252850.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.252850.1.five_prime_UTR.1	Cucsa.252850.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.252850.1.CDS.1	Cucsa.252850.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.252850.1.three_prime_UTR.1	Cucsa.252850.1.three_prime_UTR.1	three_prime_UTR