Cla021761.1 (mRNA) Watermelon (97103) v1

Overview
NameCla021761
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 5970345 .. 5970593 (+)
Sequence length249
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

mRNA sequence

ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

Coding sequence (CDS)

ATGGCAGCTCGTAAGGATCTCACTAGGATTGGATTGGAAGGCTTTGCCATTATAGAAGAACACTACGACCGACCGAGGAGGAGGCCGAAGCCAGGTGCTCCAGGTCAGCCGCAACCAGTGGCAGTAGTTCAACCTCCACAAAGAATGGTTGAGCCATCGCCGCCTATTCGTTGTGATCAGTTGGCCAAAGCTCACGGAGGTATGATCATTAAAGACTGGGGCGGAAAGCGGGTCAACAAAGCTCTTTGA

Protein sequence

MAARKDLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCDQLAKAHGGMIIKDWGGKRVNKAL
Homology
[Close]
BLAST of Cla021761 vs. TrEMBL
Match: A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-26
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 1  MAARK-DLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCD 60
          MAAR  DL RIGLEGF  IEE YDRPRR+P+  AP  PQPV  + PPQR VE SP IRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGMIIKDWGGKRVNKAL 83
          QLAKAHGG+IIK+WGGKRVNK +
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVV 83

[Close]
BLAST of Cla021761 vs. TrEMBL
Match: A0A0A0L7Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.1e-13
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 3  ARKDLTRIGLEGFAIIEEHYDR--PRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCDQ 62
          +R DL +IGLEGFA+IEE Y +  P+RRP+  A   PQ +  + PPQRM E SPPIRC+Q
Sbjct: 8  SRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQ 67

Query: 63 LAKAHGG 68
          LAK H G
Sbjct: 68 LAKTHEG 74

[Close]
BLAST of Cla021761 vs. NCBI nr
Match: gi|700202002|gb|KGN57135.1| (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 9.2e-26
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 1  MAARK-DLTRIGLEGFAIIEEHYDRPRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCD 60
          MAAR  DL RIGLEGF  IEE YDRPRR+P+  AP  PQPV  + PPQR VE SP IRCD
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCD 60

Query: 61 QLAKAHGGMIIKDWGGKRVNKAL 83
          QLAKAHGG+IIK+WGGKRVNK +
Sbjct: 61 QLAKAHGGIIIKEWGGKRVNKVV 83

[Close]
BLAST of Cla021761 vs. NCBI nr
Match: gi|700202001|gb|KGN57134.1| (hypothetical protein Csa_3G164530 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 3  ARKDLTRIGLEGFAIIEEHYDR--PRRRPKPGAPGQPQPVAVVQPPQRMVEPSPPIRCDQ 62
          +R DL +IGLEGFA+IEE Y +  P+RRP+  A   PQ +  + PPQRM E SPPIRC+Q
Sbjct: 8  SRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQ 67

Query: 63 LAKAHGG 68
          LAK H G
Sbjct: 68 LAKTHEG 74

The following BLAST results are available for this feature:
BLAST of Cla021761 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5A8_CUCSA6.4e-2672.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164540 PE=4 SV=1[more]
A0A0A0L7Z0_CUCSA8.1e-1358.21Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164530 PE=4 SV=1[more]
BLAST of Cla021761 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202002|gb|KGN57135.1|9.2e-2672.29hypothetical protein Csa_3G164540 [Cucumis sativus][more]
gi|700202001|gb|KGN57134.1|1.2e-1258.21hypothetical protein Csa_3G164530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla021761Cla021761gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla021761Cla021761.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla021761.1.cds1Cla021761.1.cds1CDS