Cla019760 (gene) Watermelon (97103) v1

NameCla019760
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCalmodulin (AHRD V1 ***- B6SMJ0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type
LocationChr3 : 9890119 .. 9890373 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATGATCCTCAAGACCAAGCTGAACGTGAACGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAAGATCTCTGCATCCGAGCTCGGGGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCTGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTATGAAGAGTTCACAGATTTCGCCCGCGCTAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

mRNA sequence

ATGGCTGATGATCCTCAAGACCAAGCTGAACGTGAACGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAAGATCTCTGCATCCGAGCTCGGGGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCTGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTATGAAGAGTTCACAGATTTCGCCCGCGCTAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

Coding sequence (CDS)

ATGGCTGATGATCCTCAAGACCAAGCTGAACGTGAACGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAAGATCTCTGCATCCGAGCTCGGGGAAGCCTTGAAGACGCTCGGCTCCGTCACCGCTGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGGTTCATTTCGTATGAAGAGTTCACAGATTTCGCCCGCGCTAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTCTAA

Protein sequence

MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFARANRGLVKDVAKIF
BLAST of Cla019760 vs. Swiss-Prot
Match: ALL3_OLEEU (Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-35
Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQ+ AE ERIFKRFDANGDGKIS+SELGE LKTLGSVT +E+QRMMAEIDTDGDGF
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          IS+EEFT FARANRGLVKDVAKIF
Sbjct: 61 ISFEEFTVFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. Swiss-Prot
Match: POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula GN=BETV4 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-35
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 1

Query: 1  MADD-PQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQD+AERERIFKRFDANGDGKISA+ELGEALKTLGS+T DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDG 60

Query: 61 FISYEEFTDFARANRGLVKDVAKIF 85
          FIS++EFTDF RANRGL+KDVAKIF
Sbjct: 61 FISFQEFTDFGRANRGLLKDVAKIF 85

BLAST of Cla019760 vs. Swiss-Prot
Match: POLC4_ALNGL (Polcalcin Aln g 4 OS=Alnus glutinosa PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-34
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 1

Query: 1  MADD-PQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQDQAE ERIFK FDANGDGKISASELG+ALKTLGSVT DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDQAEHERIFKCFDANGDGKISASELGDALKTLGSVTPDEVKHMMAEIDTDGDG 60

Query: 61 FISYEEFTDFARANRGLVKDVAKIF 85
          FIS++EFT+FARANRGLVKDVAKIF
Sbjct: 61 FISFQEFTNFARANRGLVKDVAKIF 85

BLAST of Cla019760 vs. Swiss-Prot
Match: POLC3_CHEAL (Polcalcin Che a 3 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-34
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 1

Query: 3  DDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS 62
          D PQD A+RERIFKRFD NGDGKIS+SELG+ALKTLGSVT DEV+RMMAEIDTDGDGFIS
Sbjct: 5  DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFIS 64

Query: 63 YEEFTDFARANRGLVKDVAKIF 85
          ++EFTDFARANRGLVKDV+KIF
Sbjct: 65 FDEFTDFARANRGLVKDVSKIF 86

BLAST of Cla019760 vs. Swiss-Prot
Match: POLC1_TOBAC (Polcalcin Nic t 1 OS=Nicotiana tabacum GN=Nict1 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.4e-34
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+DPQD A+RERIFKRFD NGDGKIS++ELGE LK LGSVT++EVQ MMAE+DTDGDGF
Sbjct: 1  MAEDPQDIADRERIFKRFDLNGDGKISSAELGETLKMLGSVTSEEVQHMMAELDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEF +FARANRGL+KDVAK+F
Sbjct: 61 ISYEEFEEFARANRGLIKDVAKVF 84

BLAST of Cla019760 vs. TrEMBL
Match: A0A0A0KQB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420320 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-38
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. TrEMBL
Match: I3ST68_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.2e-34
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD A+RERIFKRFDANGDG+IS+SELGEALKTLGSVTA+EVQRMM EID DGDGF
Sbjct: 1  MADDPQDVADRERIFKRFDANGDGQISSSELGEALKTLGSVTAEEVQRMMDEIDIDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFT FARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTSFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. TrEMBL
Match: W8PPL7_FRAEX (Fra e 3.01 allergen OS=Fraxinus excelsior PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.8e-34
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQ+ A+ ERIFKR DANGDGKIS+SELGE LKTLGS+T DE+QRMMAEIDTDGDGF
Sbjct: 1  MADDPQEVAQLERIFKRLDANGDGKISSSELGETLKTLGSITPDEIQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. TrEMBL
Match: G7K1Y2_MEDTR (EF hand calcium-binding family protein OS=Medicago truncatula GN=MTR_5g079470 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-33
Identity = 72/84 (85.71%), Postives = 81/84 (96.43%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+DPQD A+RERIFKRFDANGDGKIS++ELGEAL+TLGSVT DEV+RMM EIDTDGDGF
Sbjct: 1  MAEDPQDVADRERIFKRFDANGDGKISSAELGEALETLGSVTGDEVKRMMEEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISY+EFT+FA+ANRGLVKDVAKIF
Sbjct: 61 ISYDEFTEFAKANRGLVKDVAKIF 84

BLAST of Cla019760 vs. TrEMBL
Match: A0A151U189_CAJCA (Polcalcin Ole e 3 OS=Cajanus cajan GN=KK1_005654 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-33
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD A+RERIFK FDANGDG+IS++ELGEALK LGSVT DEVQRMM EIDTDGDG+
Sbjct: 1  MADDPQDVADRERIFKHFDANGDGQISSAELGEALKALGSVTPDEVQRMMEEIDTDGDGY 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFT+FARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTEFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. NCBI nr
Match: gi|659121144|ref|XP_008460520.1| (PREDICTED: polcalcin Ole e 3 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-38
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKIS+SELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. NCBI nr
Match: gi|449445084|ref|XP_004140303.1| (PREDICTED: polcalcin Ole e 3 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.8e-38
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. NCBI nr
Match: gi|388510788|gb|AFK43460.1| (unknown [Lotus japonicus])

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-34
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD A+RERIFKRFDANGDG+IS+SELGEALKTLGSVTA+EVQRMM EID DGDGF
Sbjct: 1  MADDPQDVADRERIFKRFDANGDGQISSSELGEALKTLGSVTAEEVQRMMDEIDIDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFT FARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTSFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. NCBI nr
Match: gi|589912891|gb|AHL24661.1| (Fra e 3.01 allergen [Fraxinus excelsior])

HSP 1 Score: 151.8 bits (382), Expect = 5.5e-34
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 1

Query: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQ+ A+ ERIFKR DANGDGKIS+SELGE LKTLGS+T DE+QRMMAEIDTDGDGF
Sbjct: 1  MADDPQEVAQLERIFKRLDANGDGKISSSELGETLKTLGSITPDEIQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFARANRGLVKDVAKIF 85
          ISYEEFTDFARANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

BLAST of Cla019760 vs. NCBI nr
Match: gi|2051993|emb|CAA73147.1| (Bet v 4 [Betula pendula])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 75/85 (88.24%), Postives = 82/85 (96.47%), Query Frame = 1

Query: 1  MADD-PQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQD+AERERIFKRFDANGDGKISA+ELGEALKTLGS+T DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDG 60

Query: 61 FISYEEFTDFARANRGLVKDVAKIF 85
          FIS++EFTDFARANRGL+KDVAKIF
Sbjct: 61 FISFQEFTDFARANRGLLKDVAKIF 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ALL3_OLEEU1.3e-3588.10Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV=1[more]
POLC4_BETPN2.2e-3587.06Polcalcin Bet v 4 OS=Betula pendula GN=BETV4 PE=1 SV=1[more]
POLC4_ALNGL1.1e-3488.24Polcalcin Aln g 4 OS=Alnus glutinosa PE=1 SV=1[more]
POLC3_CHEAL1.9e-3486.59Polcalcin Che a 3 OS=Chenopodium album PE=1 SV=1[more]
POLC1_TOBAC9.4e-3480.95Polcalcin Nic t 1 OS=Nicotiana tabacum GN=Nict1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KQB8_CUCSA3.3e-3897.62Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420320 PE=4 SV=1[more]
I3ST68_LOTJA2.2e-3490.48Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
W8PPL7_FRAEX3.8e-3488.10Fra e 3.01 allergen OS=Fraxinus excelsior PE=2 SV=1[more]
G7K1Y2_MEDTR1.9e-3385.71EF hand calcium-binding family protein OS=Medicago truncatula GN=MTR_5g079470 PE... [more]
A0A151U189_CAJCA1.9e-3386.90Polcalcin Ole e 3 OS=Cajanus cajan GN=KK1_005654 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659121144|ref|XP_008460520.1|2.2e-3898.81PREDICTED: polcalcin Ole e 3 [Cucumis melo][more]
gi|449445084|ref|XP_004140303.1|4.8e-3897.62PREDICTED: polcalcin Ole e 3 [Cucumis sativus][more]
gi|388510788|gb|AFK43460.1|3.2e-3490.48unknown [Lotus japonicus][more]
gi|589912891|gb|AHL24661.1|5.5e-3488.10Fra e 3.01 allergen [Fraxinus excelsior][more]
gi|2051993|emb|CAA73147.1|1.2e-3388.24Bet v 4 [Betula pendula][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0006412 translation
cellular_component GO:0012505 endomembrane system
cellular_component GO:0016020 membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003735 structural constituent of ribosome
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU62488watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019760Cla019760.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU62488WMU62488transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 13..70
score: 2.7
IPR002048EF-hand domainSMARTSM00054efh_1coord: 45..73
score: 2.2E-6coord: 10..38
score: 1.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 44..76
score: 12.672coord: 6..41
score: 14
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 6..73
score: 3.4
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 8..70
score: 2.23
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 19..31
score: -coord: 54..66
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 10..69
score: 6.5
NoneNo IPR availablePANTHERPTHR10891:SF605CALCIUM-BINDING PROTEIN CML25-RELATEDcoord: 10..69
score: 6.5