Cla006258 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006258
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Low psii accumulation2 protein (AHRD V1 ***- F4KDA6_ARATH)
Location	Chr5 : 7505493 .. 7507814 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTACTATTTTTGTTACTAATTTTTGTTCATTGCAATTTGAACTTCAGAATTGTGTTTTGTGACAGTTGATGTTACGGTTTCCGTTCGAGTAATCAGGTTGTGATAGTAGTCAAATTCCGATTCATATAGGATGTATTTCTTAAGATGTGGAGGTAGAAGTTTGAAACCATAGTCCGAAAATAAGGCGAATCGTGAAGGGAATTACTATTTTGGCAAGATTGTGGGTTGAAATTAGATTATCTGTTGAAAAAACCTGAAAATCAGAAGCATTTGAGTTATGAAATGAAGAATATTATACTCTAGCCTCCTTCATTTCGTTTTGTGAATAGCTGTGGCAGATCTTCAATCACCAATCTTACTTTCTTACTATCGAAGTGCATATTTGGATTGTAAAGTTAGGAAACATTCCATAACCATTTATGAATATGCTAATGTAATGCAAGAGTTCTCCAAAGCTCAGGATGTGAGATGAATGTAGATGTACAGTGTCCTCATTGTTACTTTATTTTAGTGGGAATATTTGCTTTCAATGTTACCTCTCCAGTTACTGTATATTCTTTAGTGAAAGAAAGGTGATCTTTGGATATTGGATTGGATTTCCTTGGTCCTCCTCTCCCCCTGGCATGTGTACACGTGCTACGGTAGCATCAATTTGGTTGTTGATTTGGCCTTCCGACACCAATCACTTGTTGTGAGGCTCTAGATTTGTCCTCTAACAAATATATTTGCATAAACATCTTACAATGCTTATATAAAGGAAATTGTAGTAACATATCCTTCCTTTTAGTGTAGGATTTTCCAATCAAAATAAGATGCTTATGATTTTTTCTGGCCTTCTGATGATTAATTGTCTGGAAGACCCTCAAATAACTGGTCTATGTTTTGAAGCATGTTTGCTTTGCTATGTAACTTCATAATGAATTTGACTAAATTACTGCTAATTTATATTTGATATTTTCTGTTGTTTCTTTCAAATGAAAATTCACTTAACTTAACTGAACTTAACACGCAGTATTCAAATCCTCTTGTCTACTTAAGTCTTTAGAAATGTTCACCGTTTCAGATTTTAGACAGTTTTTCAGTTAGATTATCATCCTTTTCAACTAGTTCCTCTAGTTAATGGTTCTGCAAATTATCATCCCAGCCTCGACTTCCATTTGATATCCTTAAACCTAATGTAGCTGGATTAGATCGGGCAATATCCATTATACTATCTAAAAGGTTCTGATTGTTCAAATCCTGTTCTTTGACTCTCAAGTTAAGTCTTGGTTTTCACGAAAACCTTTATTTCAAAACTTGCTTGATTAATAGTTGTCTGGAGTTCAATGGTTTGACACTTCCGGCTTATATCTGCAACTGAAAACGTACCACAATGTACTTCATTATTATTATTTAATTATACCATCAAACTAATTGAACGTGGGAAAGTGGTAGCTATTTTTAAATCTGTAAGTGCCTTTCATAGTTTTATGTGGACATTGGACAATATGTAGTCAACTTCTTTCCACTTCTATACCATTGAATTGTTTGATGGCTCTAAATATGCGAAATATTTTCTTGCTTTTATTTGACTAGTACGAATATGCACTTGGTTTGACTGTGTTTTAAGCCTATTTTCAGTGTAAAAATTTTGATGTATAAATCCTTTGATGAATATGGTCTCATAGTTCATGTTTTCATTTCACTTCCACCTCCTCAACTTTGGTTGACGTGCACCTGCAGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA

mRNA sequence

ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA

Coding sequence (CDS)

ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA

Protein sequence

MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

Homology

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BLAST of Cla006258 vs. Swiss-Prot
Match: LPA2_ARATH (Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-46
Identity = 105/198 (53.03%), Postives = 127/198 (64.14%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI  HSP SF+ +PYHL          P+F IK QNS           D +   + S
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIES-------DTTEDPSRS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           K S+SS  GFGS +  S+   K S      K  + +  + RR+PVEKPVF+ E     A+
Sbjct: 61  KNSSSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKREVNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 199
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

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BLAST of Cla006258 vs. TrEMBL
Match: A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 3.9e-93
Identity = 173/199 (86.93%), Postives = 187/199 (93.97%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDD+ +A   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
              TSSPQGFGSSSPQST+T+KS+PK++KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

[Close]

BLAST of Cla006258 vs. TrEMBL
Match: A0A067JS76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.7e-56
Identity = 128/205 (62.44%), Postives = 149/205 (72.68%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYH--LPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLAT 60
           MALQI  +SPS  T+K Y   L  P L   +KPK  I+SQN +          +++  + 
Sbjct: 1   MALQI--YSPSCLTKKSYQHLLYAPVLLSKTKPKLRIQSQNPTTD-------TENTKDSA 60

Query: 61  SSKPSTSSPQGFGSSSPQSTTTNKSSPKAV------KQKGKRQRASIIRRSPVEKPVFVG 120
           + K ST+   GFGSSSP ++T N +   A       KQKGKR+RASIIRR+PVEKP FV 
Sbjct: 61  TLKKSTARGLGFGSSSPAASTKNPNKASASDVTSKKKQKGKRERASIIRRTPVEKPSFVS 120

Query: 121 EVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180
           +VDE  AKEQS+NES FLL WLGLG +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT
Sbjct: 121 QVDETKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180

Query: 181 VSLFVAGTVAYGVLKYLQNEKIKDE 198
           V LFVAGTVAYGVLKYLQNEK+KD+
Sbjct: 181 VFLFVAGTVAYGVLKYLQNEKLKDQ 196

[Close]

BLAST of Cla006258 vs. TrEMBL
Match: W9S5C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.5e-54
Identity = 128/206 (62.14%), Postives = 145/206 (70.39%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYHLPN-PSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLAT- 60
           MAL I  + P SFT KPY LP+ P  HF       +KSQ SSE  K      D  + A  
Sbjct: 1   MALHI--NCPPSFTAKPYRLPHTPVFHFT------VKSQTSSEPPKSTVNPTDSVAPARP 60

Query: 61  SSKPSTSSPQ-GFGSS--SPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEV- 120
           + KPS+S+   GFGSS  SP  +  N+S+    K+KGKR+RASIIRRSPVEKP F     
Sbjct: 61  NDKPSSSTTGLGFGSSASSPSPSPANESASSKKKRKGKRERASIIRRSPVEKPSFASAPT 120

Query: 121 --DEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180
             D+E  KE+ RNES FLL WLGLG +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT
Sbjct: 121 AEDDEKVKERGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180

Query: 181 VSLFVAGTVAYGVLKYLQNEKIKDEK 199
           V LFVAGTV YGVLKYLQNEK+KD+K
Sbjct: 181 VVLFVAGTVTYGVLKYLQNEKLKDQK 198

[Close]

BLAST of Cla006258 vs. TrEMBL
Match: A0A061G053_THECC (Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.5e-54
Identity = 125/202 (61.88%), Postives = 145/202 (71.78%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI  H+PSSFT   YH    +  FP KP F IKSQ  ++  +P          +T  
Sbjct: 1   MALQI--HTPSSFTNGLYHR---NFIFP-KPIFSIKSQKPTDDAEP-----SPEPSSTPK 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAV-----KQKGKRQRASIIRRSPVEKPVFVGEVD 120
           KP+    QGFGSSSP S+++  S   ++     KQKGKR RASIIRRSPVEKP FV + +
Sbjct: 61  KPAAPG-QGFGSSSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPAFVSKEE 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           E  A+EQ +NES FLL WLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTV L
Sbjct: 121 EAKAEEQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVLL 180

Query: 181 FVAGTVAYGVLKYLQNEKIKDE 198
           F+AGTVAYGVLKYLQNE +KD+
Sbjct: 181 FLAGTVAYGVLKYLQNENLKDQ 190

[Close]

BLAST of Cla006258 vs. TrEMBL
Match: D7T252_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01420 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.6e-52
Identity = 117/185 (63.24%), Postives = 141/185 (76.22%), Query Frame = 1


Query: 15  RKPYHLPN-PSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSS 74
           +KP+ L + P L  P+KP+  IK Q+SSE +KP          +TS++P TS  QGFGS+
Sbjct: 6   QKPHALLHTPILITPTKPRLRIKCQDSSEPQKP----------STSAQP-TSPGQGFGSA 65

Query: 75  SPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTW 134
           S    +T K++    K+KG+R+RASIIRRSPV+KP F+G  ++  +KEQ RNES FLL W
Sbjct: 66  S----STVKTAVNKKKEKGRRERASIIRRSPVQKPEFLGVEEQGESKEQGRNESAFLLAW 125

Query: 135 LGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEK 194
           LGLG +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTV LFVAGTVAYGVLKYLQNE+
Sbjct: 126 LGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLFVAGTVAYGVLKYLQNEE 175

Query: 195 IKDEK 199
           IK  K
Sbjct: 186 IKTPK 175

[Close]

BLAST of Cla006258 vs. NCBI nr
Match: gi|659077251|ref|XP_008439106.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 370.9 bits (951), Expect = 1.4e-99
Identity = 184/199 (92.46%), Postives = 193/199 (96.98%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           KPSTSSPQGFGSSSPQST+T+KS+PK+VKQKGKRQRASIIRRSPVEKPVFVGEVDE+ AK
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Cla006258 vs. NCBI nr
Match: gi|449460802|ref|XP_004148133.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 5.6e-93
Identity = 173/199 (86.93%), Postives = 187/199 (93.97%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDD+ +A   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
              TSSPQGFGSSSPQST+T+KS+PK++KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

[Close]

BLAST of Cla006258 vs. NCBI nr
Match: gi|802769639|ref|XP_012090413.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas])

HSP 1 Score: 227.3 bits (578), Expect = 2.4e-56
Identity = 128/205 (62.44%), Postives = 149/205 (72.68%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYH--LPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLAT 60
           MALQI  +SPS  T+K Y   L  P L   +KPK  I+SQN +          +++  + 
Sbjct: 1   MALQI--YSPSCLTKKSYQHLLYAPVLLSKTKPKLRIQSQNPTTD-------TENTKDSA 60

Query: 61  SSKPSTSSPQGFGSSSPQSTTTNKSSPKAV------KQKGKRQRASIIRRSPVEKPVFVG 120
           + K ST+   GFGSSSP ++T N +   A       KQKGKR+RASIIRR+PVEKP FV 
Sbjct: 61  TLKKSTARGLGFGSSSPAASTKNPNKASASDVTSKKKQKGKRERASIIRRTPVEKPSFVS 120

Query: 121 EVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180
           +VDE  AKEQS+NES FLL WLGLG +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT
Sbjct: 121 QVDETKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180

Query: 181 VSLFVAGTVAYGVLKYLQNEKIKDE 198
           V LFVAGTVAYGVLKYLQNEK+KD+
Sbjct: 181 VFLFVAGTVAYGVLKYLQNEKLKDQ 196

[Close]

BLAST of Cla006258 vs. NCBI nr
Match: gi|703118995|ref|XP_010101744.1| (hypothetical protein L484_004366 [Morus notabilis])

HSP 1 Score: 219.5 bits (558), Expect = 5.1e-54
Identity = 128/206 (62.14%), Postives = 145/206 (70.39%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYHLPN-PSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLAT- 60
           MAL I  + P SFT KPY LP+ P  HF       +KSQ SSE  K      D  + A  
Sbjct: 1   MALHI--NCPPSFTAKPYRLPHTPVFHFT------VKSQTSSEPPKSTVNPTDSVAPARP 60

Query: 61  SSKPSTSSPQ-GFGSS--SPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEV- 120
           + KPS+S+   GFGSS  SP  +  N+S+    K+KGKR+RASIIRRSPVEKP F     
Sbjct: 61  NDKPSSSTTGLGFGSSASSPSPSPANESASSKKKRKGKRERASIIRRSPVEKPSFASAPT 120

Query: 121 --DEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180
             D+E  KE+ RNES FLL WLGLG +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT
Sbjct: 121 AEDDEKVKERGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180

Query: 181 VSLFVAGTVAYGVLKYLQNEKIKDEK 199
           V LFVAGTV YGVLKYLQNEK+KD+K
Sbjct: 181 VVLFVAGTVTYGVLKYLQNEKLKDQK 198

[Close]

BLAST of Cla006258 vs. NCBI nr
Match: gi|590671793|ref|XP_007038430.1| (Low psii accumulation2, putative [Theobroma cacao])

HSP 1 Score: 219.5 bits (558), Expect = 5.1e-54
Identity = 125/202 (61.88%), Postives = 145/202 (71.78%), Query Frame = 1


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI  H+PSSFT   YH    +  FP KP F IKSQ  ++  +P          +T  
Sbjct: 1   MALQI--HTPSSFTNGLYHR---NFIFP-KPIFSIKSQKPTDDAEP-----SPEPSSTPK 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAV-----KQKGKRQRASIIRRSPVEKPVFVGEVD 120
           KP+    QGFGSSSP S+++  S   ++     KQKGKR RASIIRRSPVEKP FV + +
Sbjct: 61  KPAAPG-QGFGSSSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPAFVSKEE 120

Query: 121 EEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSL 180
           E  A+EQ +NES FLL WLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTV L
Sbjct: 121 EAKAEEQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVLL 180

Query: 181 FVAGTVAYGVLKYLQNEKIKDE 198
           F+AGTVAYGVLKYLQNE +KD+
Sbjct: 181 FLAGTVAYGVLKYLQNENLKDQ 190

The following BLAST results are available for this feature:

BLAST of Cla006258 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LPA2_ARATH	2.3e-46	53.03	Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 P...	[more]

BLAST of Cla006258 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8E3_CUCSA	3.9e-93	86.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1	[more]
A0A067JS76_JATCU	1.7e-56	62.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1	[more]
W9S5C4_9ROSA	3.5e-54	62.14	Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1	[more]
A0A061G053_THECC	3.5e-54	61.88	Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1	[more]
D7T252_VITVI	9.6e-52	63.24	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01420 PE=4 SV=...	[more]

BLAST of Cla006258 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077251\|ref\|XP_008439106.1\|	1.4e-99	92.46	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]	[more]
gi\|449460802\|ref\|XP_004148133.1\|	5.6e-93	86.93	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]	[more]
gi\|802769639\|ref\|XP_012090413.1\|	2.4e-56	62.44	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]	[more]
gi\|703118995\|ref\|XP_010101744.1\|	5.1e-54	62.14	hypothetical protein L484_004366 [Morus notabilis]	[more]
gi\|590671793\|ref\|XP_007038430.1\|	5.1e-54	61.88	Low psii accumulation2, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010467	gene expression
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009657	plastid organization
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU37093	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006258	Cla006258.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU37093	WMU37093	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37385	FAMILY NOT NAMED	coord: 34..198 score: 3.3
None	No IPR available	PANTHER	PTHR37385:SF1	SUBFAMILY NOT NAMED	coord: 34..198 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006258	Cla97C05G089260	Watermelon (97103) v2	wmwmbB206
Cla006258	Csa3G176310	Cucumber (Chinese Long) v2	cuwmB233
Cla006258	MELO3C006826	Melon (DHL92) v3.5.1	mewmB461
Cla006258	ClCG05G007450	Watermelon (Charleston Gray)	wcgwmB286
Cla006258	CSPI03G16070	Wild cucumber (PI 183967)	cpiwmB231
Cla006258	Cucsa.251500	Cucumber (Gy14) v1	cgywmB479
Cla006258	CmaCh04G003260	Cucurbita maxima (Rimu)	cmawmB707
Cla006258	CmoCh04G003420	Cucurbita moschata (Rifu)	cmowmB702
Cla006258	CsGy3G016170	Cucumber (Gy14) v2	cgybwmB217
Cla006258	MELO3C006826.2	Melon (DHL92) v3.6.1	medwmB447
Cla006258	Carg08004	Silver-seed gourd	carwmB0373
Cla006258	CsaV3_3G016270	Cucumber (Chinese Long) v3	cucwmB239
Cla006258	Bhi01G000910	Wax gourd	wgowmB201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006258	Watermelon (97103) v2	wmwmbB193
Cla006258	Watermelon (97103) v1	wmwmB126
Cla006258	Cucumber (Gy14) v1	cgywmB549
Cla006258	Cucurbita maxima (Rimu)	cmawmB266
Cla006258	Cucurbita maxima (Rimu)	cmawmB316
Cla006258	Cucurbita maxima (Rimu)	cmawmB564
Cla006258	Cucurbita maxima (Rimu)	cmawmB567
Cla006258	Cucurbita maxima (Rimu)	cmawmB872
Cla006258	Cucurbita moschata (Rifu)	cmowmB257
Cla006258	Cucurbita moschata (Rifu)	cmowmB310
Cla006258	Cucurbita moschata (Rifu)	cmowmB558
Cla006258	Cucurbita moschata (Rifu)	cmowmB859
Cla006258	Melon (DHL92) v3.5.1	mewmB019
Cla006258	Watermelon (Charleston Gray)	wcgwmB137
Cla006258	Cucumber (Chinese Long) v2	cuwmB403
Cla006258	Cucurbita pepo (Zucchini)	cpewmB182
Cla006258	Cucurbita pepo (Zucchini)	cpewmB227
Cla006258	Cucurbita pepo (Zucchini)	cpewmB437
Cla006258	Cucurbita pepo (Zucchini)	cpewmB703
Cla006258	Cucurbita pepo (Zucchini)	cpewmB705
Cla006258	Bottle gourd (USVL1VR-Ls)	lsiwmB024
Cla006258	Bottle gourd (USVL1VR-Ls)	lsiwmB366
Cla006258	Cucumber (Gy14) v2	cgybwmB376
Cla006258	Cucumber (Gy14) v2	cgybwmB378
Cla006258	Melon (DHL92) v3.6.1	medwmB021
Cla006258	Melon (DHL92) v3.6.1	medwmB015
Cla006258	Silver-seed gourd	carwmB0874
Cla006258	Silver-seed gourd	carwmB0920
Cla006258	Cucumber (Chinese Long) v3	cucwmB427
Cla006258	Cucumber (Chinese Long) v3	cucwmB429