MELO3C006826 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006826
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Low psii accumulation2, putative
Location	chr6 : 6428507 .. 6430908 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGAACAATAAATTTTGCTAATTCCCAATTGAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCGTCTGAATCTGAGAAACCCATTTCCAAAATTGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATCTACCTCATCGCCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGTCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTATGACTTCTGTATCTAATTTTTGTTCATTGCAATCTGAATTTCGGAATTTTGCTTTGTGAAAAATCAGGTTGTTGTAGTTGTTGTTCTGAGACCTGTAGTAGTCAAATTCCGATTCGTGTAGGATTTATTCCTTAAGACGTGGAAGTAGAAATTTTGAAACCATAGTCTGAACGTTAGGCGAACTGTGAAGGGAATTACTGTTTTGGCAAGATTGTGGTTTGAAATTAGATTATATGTTGAAAAACCCGAAAATAAGTTATGAAATGAAAAGTATTATAATCTAGGCCCCCTTCGTATGGTGTCGTGAATAGCATTGGTAGTTCTTCGATCACCAATCTTACTTTCTTTCTTTCGAAGTGCATATTTGGATTGTAAAATTAGGGCAACAGTCCATTACCGTTTATGAATAAACTAATGTTATGGAAGAGTTATCCAAAGCTAAGGATTTGAGTCGAGAGTAGATGTACATTGCTCTCATTGTTACTTTCTTTTGGTAAGAAGATTTGTCTTCAGTGTTTGCCTCACCAGTTATTTTATGTTCTTTAGTGTGATGGAAAGGTGATCTTTTGATAGTGGATTATAGATTCCCCATGTCCTCCTCTAGCAAATATATTGCATAAATATCTTACAATGCTTATTCATATATTAAAGTATAGTAACATAGACTTCCTTTTAGTTTATGATTTTCCGATCAAAATAAGATGCTATGATTTTGCTGGCCTTGTGATGATTAATTCGTCTGGAAGACCATCAACTAACTGGTCTATGTTTTGAATCGTATTTGCTTTGCTGTGTTACTTCATAAATGAATTTGACTAAATTACTGCGGTGCTAATTTATCTTTAATATTTGCTGGTGGTCCATTGAAATGGGAATCCACTTAACTGAACTTAACTTAACTCTTTTGGATTGTCCACCTTTTCAGATTCTAGACAGTTTTTCAGTTAGATTGTCATCCTTTCCAAATTGTTCCTCTAGTTAATGGTTCTGCAAATTATCATCCCAGCCTTGACTTCCATTTGGTATCCTTAAGGTTAATGTAGGTAGATAAGATCGGGCATTGTCATTTGACTCTCAAGTTAAATCCATTGTTTTCATGAAACCTTTATTTTGAAGCTTGCTTGATTAAGACTTACGAGTTGTTGTCTAGAGTTCAATGGTTTGACACTTCATGCTTATATCTGCAATTGAAAACGTACAACCATGTACGTCATTTTTTGTTAATTCTACCATCAAACTAATTGAAAGTGATAGCTATTGTCATGTGGACGAAATGTAGTGAACTTCCACTTCTATATCATTGAATTGTTAGATGGCTCTAAACATGTTAAATATTTCCATGCTTTCATTTGACCAGTACGAATATGCATTTGGTTTGACCGAGTTTTGAGCTATTTTCAGTGTAAAAATTTTGATGTACAATTCCTTTCGTTTGATGAATATGGTGTGCATAGTTCATGTTTTCCTTTCACTTCCATCCACCACCACAACTAATTGGTTGATGTGCACCTGCAGGTTTCTTACCAGAAGAGTGGGACAGGCTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTGATCCTTTTTGCGATGCTTTGTATTTGGTGTGTAGACCTGAAAAATCCCAAGTGCCTATAGATCTTGTTTATATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATCTTTTGAGCTCAAAAGCAAATAAGATGCTGTTGTTGAATCCTAGGAAACTCTTTCCCATCATTATTATTTTTGGGCTTTAATTTATCGACAATAATCTTCTGATAGACCC

mRNA sequence

AAGGGAACAATAAATTTTGCTAATTCCCAATTGAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCGTCTGAATCTGAGAAACCCATTTCCAAAATTGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATCTACCTCATCGCCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGTCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTTTCTTACCAGAAGAGTGGGACAGGCTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTGATCCTTTTTGCGATGCTTTGTATTTGGTGTGTAGACCTGAAAAATCCCAAGTGCCTATAGATCTTGTTTATATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATCTTTTGAGCTCAAAAGCAAATAAGATGCTGTTGTTGAATCCTAGGAAACTCTTTCCCATCATTATTATTTTTGGGCTTTAATTTATCGACAATAATCTTCTGATAGACCC

Coding sequence (CDS)

ATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCGTCTGAATCTGAGAAACCCATTTCCAAAATTGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATCTACCTCATCGCCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGTCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTTTCTTACCAGAAGAGTGGGACAGGCTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAA

Protein sequence

MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS*

Homology

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BLAST of MELO3C006826 vs. Swiss-Prot
Match: LPA2_ARATH (Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.9e-47
Identity = 110/199 (55.28%), Postives = 135/199 (67.84%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI  HSP SF+ +PYHL       +  P+F IK QN S+ E       D     + S
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIES------DTTEDPSRS 60

Query: 61  KPSTSSPQGFGSSSPQSTSTSK-STPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVA 120
           K S+SS  GFGS +  S+   K S   S  +KGK +R  + RR+PVEKPVF+ E     A
Sbjct: 61  KNSSSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKR-EVNRRAPVEKPVFMSEEGAAKA 120

Query: 121 KEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAG 180
           +EQ +NE+ FLLTWLGLG+VIL+EGI+LAASGFLPEE D+LFVKY+YP FTP+V LFVAG
Sbjct: 121 EEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAG 180

Query: 181 TVAYGVLKYLQNEKIKDEK 199
           T AYGVLKY+QNEK+K ++
Sbjct: 181 TTAYGVLKYIQNEKMKGQE 185

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BLAST of MELO3C006826 vs. TrEMBL
Match: A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.1e-98
Identity = 184/199 (92.46%), Postives = 191/199 (95.98%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
              TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

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BLAST of MELO3C006826 vs. TrEMBL
Match: A0A067JS76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.2e-55
Identity = 129/206 (62.62%), Postives = 148/206 (71.84%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYH--LPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIAT 60
           MALQI  +SPS  TKK Y   L  P L   +KPK  I+SQNP+          ++   + 
Sbjct: 1   MALQI--YSPSCLTKKSYQHLLYAPVLLSKTKPKLRIQSQNPTTD-------TENTKDSA 60

Query: 61  SSKPSTSSPQGFGSSSPQST-------STSKSTPKSVKQKGKRQRASIIRRSPVEKPVFV 120
           + K ST+   GFGSSSP ++       S S  T K  KQKGKR+RASIIRR+PVEKP FV
Sbjct: 61  TLKKSTARGLGFGSSSPAASTKNPNKASASDVTSKK-KQKGKRERASIIRRTPVEKPSFV 120

Query: 121 GEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTP 180
            +VDE  AKEQS+NES FLL WLGLG +ILVEGIVLAASGFLPEEWD+ FVKYLYPSFTP
Sbjct: 121 SQVDETKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTP 180

Query: 181 TVSLFVAGTVAYGVLKYLQNEKIKDE 198
           TV LFVAGTVAYGVLKYLQNEK+KD+
Sbjct: 181 TVFLFVAGTVAYGVLKYLQNEKLKDQ 196

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BLAST of MELO3C006826 vs. TrEMBL
Match: A0A061G053_THECC (Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-54
Identity = 125/202 (61.88%), Postives = 144/202 (71.29%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI  H+PSSFT   YH          KP F IKSQ P++  +P  +     P +T  
Sbjct: 1   MALQI--HTPSSFTNGLYHRN----FIFPKPIFSIKSQKPTDDAEPSPE-----PSSTPK 60

Query: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSV-----KQKGKRQRASIIRRSPVEKPVFVGEVD 120
           KP+    QGFGSSSP S+S+  S   S+     KQKGKR RASIIRRSPVEKP FV + +
Sbjct: 61  KPAAPG-QGFGSSSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPAFVSKEE 120

Query: 121 EQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSL 180
           E  A+EQ +NES FLL WLGLG VILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTV L
Sbjct: 121 EAKAEEQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVLL 180

Query: 181 FVAGTVAYGVLKYLQNEKIKDE 198
           F+AGTVAYGVLKYLQNE +KD+
Sbjct: 181 FLAGTVAYGVLKYLQNENLKDQ 190

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BLAST of MELO3C006826 vs. TrEMBL
Match: W9S5C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.0e-52
Identity = 124/206 (60.19%), Postives = 143/206 (69.42%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPN-PSLHFSSKPKFIIKSQNPSESEKPISKIVDD-APIAT 60
           MAL I  + P SFT KPY LP+ P  HF+      +KSQ  SE  K      D  AP   
Sbjct: 1   MALHI--NCPPSFTAKPYRLPHTPVFHFT------VKSQTSSEPPKSTVNPTDSVAPARP 60

Query: 61  SSKPSTSSPQ-GFGSS--SPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEV- 120
           + KPS+S+   GFGSS  SP  +  ++S     K+KGKR+RASIIRRSPVEKP F     
Sbjct: 61  NDKPSSSTTGLGFGSSASSPSPSPANESASSKKKRKGKRERASIIRRSPVEKPSFASAPT 120

Query: 121 --DEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPT 180
             D++  KE+ RNES FLL WLGLG +ILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPT
Sbjct: 121 AEDDEKVKERGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180

Query: 181 VSLFVAGTVAYGVLKYLQNEKIKDEK 199
           V LFVAGTV YGVLKYLQNEK+KD+K
Sbjct: 181 VVLFVAGTVTYGVLKYLQNEKLKDQK 198

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BLAST of MELO3C006826 vs. TrEMBL
Match: M5X190_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012039mg PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 121/200 (60.50%), Postives = 141/200 (70.50%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYH-LPN-PSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIAT 60
           M LQI  HSPSSFT KPYH LP+ P LHFS + +F +K Q PSE  KP ++    +P   
Sbjct: 1   MGLQI--HSPSSFTSKPYHHLPHTPLLHFSVRTQFTVKLQTPSEPSKPKAETTQASP--- 60

Query: 61  SSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQV 120
             K  TS+  GFGSS P S +T   T  SV  K KR    +IRRSPVEKP+   E DE  
Sbjct: 61  --KKPTSAGLGFGSS-PSSPTTQNVT--SVPNKKKR----VIRRSPVEKPLLYSEEDEAK 120

Query: 121 AKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVA 180
           AKE   NES F+L WLGLG VIL +G++LAASGFLPEEWD+ FVKYLYPSFTPTV LFVA
Sbjct: 121 AKEMGTNESAFVLAWLGLGGVILAQGLLLAASGFLPEEWDKFFVKYLYPSFTPTVGLFVA 180

Query: 181 GTVAYGVLKYLQNEKIKDEK 199
           G+VAYGVLKYLQNE++K +K
Sbjct: 181 GSVAYGVLKYLQNEELKGKK 186

[Close]

BLAST of MELO3C006826 vs. TAIR10
Match: AT5G51545.1 (AT5G51545.1 low psii accumulation2)

HSP 1 Score: 188.3 bits (477), Expect = 4.4e-48
Identity = 110/199 (55.28%), Postives = 135/199 (67.84%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI  HSP SF+ +PYHL       +  P+F IK QN S+ E       D     + S
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIES------DTTEDPSRS 60

Query: 61  KPSTSSPQGFGSSSPQSTSTSK-STPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVA 120
           K S+SS  GFGS +  S+   K S   S  +KGK +R  + RR+PVEKPVF+ E     A
Sbjct: 61  KNSSSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKR-EVNRRAPVEKPVFMSEEGAAKA 120

Query: 121 KEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAG 180
           +EQ +NE+ FLLTWLGLG+VIL+EGI+LAASGFLPEE D+LFVKY+YP FTP+V LFVAG
Sbjct: 121 EEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAG 180

Query: 181 TVAYGVLKYLQNEKIKDEK 199
           T AYGVLKY+QNEK+K ++
Sbjct: 181 TTAYGVLKYIQNEKMKGQE 185

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BLAST of MELO3C006826 vs. NCBI nr
Match: gi|659077251|ref|XP_008439106.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 394.0 bits (1011), Expect = 1.5e-106
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
           KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of MELO3C006826 vs. NCBI nr
Match: gi|449460802|ref|XP_004148133.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 4.4e-98
Identity = 184/199 (92.46%), Postives = 191/199 (95.98%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
              TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

[Close]

BLAST of MELO3C006826 vs. NCBI nr
Match: gi|802769639|ref|XP_012090413.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas])

HSP 1 Score: 222.6 bits (566), Expect = 6.0e-55
Identity = 129/206 (62.62%), Postives = 148/206 (71.84%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYH--LPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIAT 60
           MALQI  +SPS  TKK Y   L  P L   +KPK  I+SQNP+          ++   + 
Sbjct: 1   MALQI--YSPSCLTKKSYQHLLYAPVLLSKTKPKLRIQSQNPTTD-------TENTKDSA 60

Query: 61  SSKPSTSSPQGFGSSSPQST-------STSKSTPKSVKQKGKRQRASIIRRSPVEKPVFV 120
           + K ST+   GFGSSSP ++       S S  T K  KQKGKR+RASIIRR+PVEKP FV
Sbjct: 61  TLKKSTARGLGFGSSSPAASTKNPNKASASDVTSKK-KQKGKRERASIIRRTPVEKPSFV 120

Query: 121 GEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTP 180
            +VDE  AKEQS+NES FLL WLGLG +ILVEGIVLAASGFLPEEWD+ FVKYLYPSFTP
Sbjct: 121 SQVDETKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTP 180

Query: 181 TVSLFVAGTVAYGVLKYLQNEKIKDE 198
           TV LFVAGTVAYGVLKYLQNEK+KD+
Sbjct: 181 TVFLFVAGTVAYGVLKYLQNEKLKDQ 196

[Close]

BLAST of MELO3C006826 vs. NCBI nr
Match: gi|590671793|ref|XP_007038430.1| (Low psii accumulation2, putative [Theobroma cacao])

HSP 1 Score: 219.9 bits (559), Expect = 3.9e-54
Identity = 125/202 (61.88%), Postives = 144/202 (71.29%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI  H+PSSFT   YH          KP F IKSQ P++  +P  +     P +T  
Sbjct: 1   MALQI--HTPSSFTNGLYHRN----FIFPKPIFSIKSQKPTDDAEPSPE-----PSSTPK 60

Query: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSV-----KQKGKRQRASIIRRSPVEKPVFVGEVD 120
           KP+    QGFGSSSP S+S+  S   S+     KQKGKR RASIIRRSPVEKP FV + +
Sbjct: 61  KPAAPG-QGFGSSSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPAFVSKEE 120

Query: 121 EQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSL 180
           E  A+EQ +NES FLL WLGLG VILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTV L
Sbjct: 121 EAKAEEQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVLL 180

Query: 181 FVAGTVAYGVLKYLQNEKIKDE 198
           F+AGTVAYGVLKYLQNE +KD+
Sbjct: 181 FLAGTVAYGVLKYLQNENLKDQ 190

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BLAST of MELO3C006826 vs. NCBI nr
Match: gi|703118995|ref|XP_010101744.1| (hypothetical protein L484_004366 [Morus notabilis])

HSP 1 Score: 213.8 bits (543), Expect = 2.8e-52
Identity = 124/206 (60.19%), Postives = 143/206 (69.42%), Query Frame = 1


Query: 1   MALQILHHSPSSFTKKPYHLPN-PSLHFSSKPKFIIKSQNPSESEKPISKIVDD-APIAT 60
           MAL I  + P SFT KPY LP+ P  HF+      +KSQ  SE  K      D  AP   
Sbjct: 1   MALHI--NCPPSFTAKPYRLPHTPVFHFT------VKSQTSSEPPKSTVNPTDSVAPARP 60

Query: 61  SSKPSTSSPQ-GFGSS--SPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEV- 120
           + KPS+S+   GFGSS  SP  +  ++S     K+KGKR+RASIIRRSPVEKP F     
Sbjct: 61  NDKPSSSTTGLGFGSSASSPSPSPANESASSKKKRKGKRERASIIRRSPVEKPSFASAPT 120

Query: 121 --DEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPT 180
             D++  KE+ RNES FLL WLGLG +ILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPT
Sbjct: 121 AEDDEKVKERGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPT 180

Query: 181 VSLFVAGTVAYGVLKYLQNEKIKDEK 199
           V LFVAGTV YGVLKYLQNEK+KD+K
Sbjct: 181 VVLFVAGTVTYGVLKYLQNEKLKDQK 198

The following BLAST results are available for this feature:

BLAST of MELO3C006826 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LPA2_ARATH	7.9e-47	55.28	Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 P...	[more]

BLAST of MELO3C006826 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8E3_CUCSA	3.1e-98	92.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1	[more]
A0A067JS76_JATCU	4.2e-55	62.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1	[more]
A0A061G053_THECC	2.7e-54	61.88	Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1	[more]
W9S5C4_9ROSA	2.0e-52	60.19	Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1	[more]
M5X190_PRUPE	1.3e-51	60.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012039mg PE=4 SV=1	[more]

BLAST of MELO3C006826 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51545.1	4.4e-48	55.28	low psii accumulation2	[more]

BLAST of MELO3C006826 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077251\|ref\|XP_008439106.1\|	1.5e-106	100.00	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]	[more]
gi\|449460802\|ref\|XP_004148133.1\|	4.4e-98	92.46	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]	[more]
gi\|802769639\|ref\|XP_012090413.1\|	6.0e-55	62.62	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]	[more]
gi\|590671793\|ref\|XP_007038430.1\|	3.9e-54	61.88	Low psii accumulation2, putative [Theobroma cacao]	[more]
gi\|703118995\|ref\|XP_010101744.1\|	2.8e-52	60.19	hypothetical protein L484_004366 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010467	gene expression
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009657	plastid organization
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU46576	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006826T1	MELO3C006826T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU46576	MU46576	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37385	FAMILY NOT NAMED	coord: 34..198 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006826	Csa3G176310	Cucumber (Chinese Long) v2	cumeB236
MELO3C006826	Cla006258	Watermelon (97103) v1	mewmB461
MELO3C006826	ClCG05G007450	Watermelon (Charleston Gray)	mewcgB427
MELO3C006826	Cla97C05G089260	Watermelon (97103) v2	mewmbB434
MELO3C006826	Bhi01G000910	Wax gourd	mewgoB529
MELO3C006826	CSPI03G16070	Wild cucumber (PI 183967)	cpimeB230
MELO3C006826	Cucsa.251500	Cucumber (Gy14) v1	cgymeB439
MELO3C006826	CmaCh04G003260	Cucurbita maxima (Rimu)	cmameB692
MELO3C006826	CmoCh04G003420	Cucurbita moschata (Rifu)	cmomeB685
MELO3C006826	CsGy3G016170	Cucumber (Gy14) v2	cgybmeB200
MELO3C006826	Carg08004	Silver-seed gourd	carmeB0381
MELO3C006826	CsaV3_3G016270	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006826	Melon (DHL92) v3.5.1	memeB015
MELO3C006826	Cucumber (Gy14) v1	cgymeB497
MELO3C006826	Cucurbita maxima (Rimu)	cmameB278
MELO3C006826	Cucurbita maxima (Rimu)	cmameB296
MELO3C006826	Cucurbita maxima (Rimu)	cmameB579
MELO3C006826	Cucurbita maxima (Rimu)	cmameB582
MELO3C006826	Cucurbita maxima (Rimu)	cmameB853
MELO3C006826	Cucurbita moschata (Rifu)	cmomeB269
MELO3C006826	Cucurbita moschata (Rifu)	cmomeB289
MELO3C006826	Cucurbita moschata (Rifu)	cmomeB567
MELO3C006826	Cucurbita moschata (Rifu)	cmomeB570
MELO3C006826	Cucurbita moschata (Rifu)	cmomeB835
MELO3C006826	Wild cucumber (PI 183967)	cpimeB400
MELO3C006826	Wild cucumber (PI 183967)	cpimeB403
MELO3C006826	Cucumber (Chinese Long) v2	cumeB405
MELO3C006826	Watermelon (Charleston Gray)	mewcgB422
MELO3C006826	Watermelon (97103) v1	mewmB481
MELO3C006826	Cucurbita pepo (Zucchini)	cpemeB177
MELO3C006826	Cucurbita pepo (Zucchini)	cpemeB190
MELO3C006826	Cucurbita pepo (Zucchini)	cpemeB414
MELO3C006826	Cucurbita pepo (Zucchini)	cpemeB697
MELO3C006826	Cucurbita pepo (Zucchini)	cpemeB701
MELO3C006826	Bottle gourd (USVL1VR-Ls)	lsimeB036
MELO3C006826	Bottle gourd (USVL1VR-Ls)	lsimeB379
MELO3C006826	Cucumber (Gy14) v2	cgybmeB350
MELO3C006826	Cucumber (Gy14) v2	cgybmeB353
MELO3C006826	Silver-seed gourd	carmeB0859
MELO3C006826	Silver-seed gourd	carmeB0911
MELO3C006826	Cucumber (Chinese Long) v3	cucmeB414
MELO3C006826	Cucumber (Chinese Long) v3	cucmeB415
MELO3C006826	Watermelon (97103) v2	mewmbB424