Carg08004 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08004
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_050 : 139152 .. 141413 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGGAAACCCTATCATCTTCCCAAAATACCTCTCCATTTCCCCTCTAAGCTAAAATTCATCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTCCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTACGAATTCTTTTCCATAATTATGTAAATTGGAACTTGAACTTCGGAATTGTACTGTTTCCATTTGCGATGGTGGGATTTTCTTTTTCTTGTTGGGGTTTCCTGTGATTGAGTTGTTGATCTGAAACGTGATAGTAGTTAAAATCAGATCCGAATAGGACTTTTCTTTGAGTCGTGGATTAGAAGTTTGAAACCACATTCCTAACATTAGACGAACTGTGATGATGGGTTGAATTTTTGTCAGTTTCTGTTGAAAAGGATTGAAATTATGAAATGAATGATATTATGATCTATGCCCCCTCCATTTCGTGTTGTGAATAGCAGTGGCGGTTGTTCAATCACCATTATCAGTGTCATTGCGCATATTTGGAGTGTTAATATAAGGCAACATTTCATAACAATTCATGACTAAGCTAATGTTATGCATTGAATTTAAGGGTTTCCAATCAGAATAAGATGCTAATATCATCCTGGCATTAACTTCCATTTGAAATCCGTAACCTAGTGTAGCTGGATTAGATTGGGCAATCAAAAGTTCTGTTGTTCAGAGCCTGTGTTTCTAGCACCTTTCATAGTTTCATGTGAACAATATGTTGTGAACTTTTTCTATTTTTATACCATCGAATTGTTTAATGGTTCTAATATGGGAAATATATTCTTTGCTTTTTCAGCCTTTTTTCAGTTAGAAAATTTGATGTCTAATTGATTTGATGAATACAATATCCACAGTTAGGTATTTTCATTTCACTTTGACCACCACAATTAATTGGTTGATGTGCACTTTTGCAGGTTTCTTACCAGAGAAGTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCGCTGTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATCTGGTATGGTGACCTGAAATGTGTCAAGTGCCTATTGATTGTGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTCTTTTAGCTCAAAGGTAAATGAGATGCTGTTGTTGGATCCTCAGAAACACCTTGCCATCAATTTATTAGTTTCTCTGGGCTTTAAGTAATTATGTTCGATGCTCGAAGATCCTTCTGTTTGTGTATATGGCATTCCCTTGTGTTCTGATTTTTCATCTCCTTTCTTCTTCCAAACAATCAGAGAGGGGAAGTCACAAAAGCAGGAGGCCCCATCTAAATTGATATAAAAAAGTAGAAAAATCAGTAAGAACATGTATAATTGTGAATAGAGAGAAAGCAGTACATCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCAGCCACCATCTTGAAATAACTTTAGAAAACAAGAGTAATAAGGAAGCAGCAGTAACAATGGTCAGAGAGGTCTGTAAATAAGTGTGCAAACTGATACACAGAAACTGAAATTTTGAAAGCACTTTTTTGTGACCCTCTGCAGATCGAAGGGACCTAAATTGTCCCAAAAAGAAGTGATAAAGAAGGTTGTTTGGTGCTGAGGACACTGAAAAGCAGTGTTGTTTGTGATGACCAAAAACAGAGGTTGTTTGGTTTGTTGTTGTTGCCCTCTTGATCCTTCTCTTCATTTAGTTTAAAAAATTGATTATTGTTTGTTTGGTAGCTCCCATTCCATTTATTAGGTAATATAAAAGGGCCTCAGAATGAGATGAAGAGTTGTTGAATGGGAAGGGTGGATTTGAGGTTAAAATTGGAGGCAAAAATGACT

mRNA sequence

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGGAAACCCTATCATCTTCCCAAAATACCTCTCCATTTCCCCTCTAAGCTAAAATTCATCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTCCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCAGAGAAGTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCGCTGTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATCTGGTATGGTGACCTGAAATGTGTCAAGTGCCTATTGATTGTGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTCTTTTAGCTCAAAGGTAAATGAGATGCTGTTGTTGGATCCTCAGAAACACCTTGCCATCAATTTATTAGTTTCTCTGGGCTTTAAGTAATTATGTTCGATGCTCGAAGATCCTTCTGTTTGTGTATATGGCATTCCCTTGTGTTCTGATTTTTCATCTCCTTTCTTCTTCCAAACAATCAGAGAGGGGAAGTCACAAAAGCAGGAGGCCCCATCTAAATTGATATAAAAAAGTAGAAAAATCAGTAAGAACATGTATAATTGTGAATAGAGAGAAAGCAGTACATCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCAGCCACCATCTTGAAATAACTTTAGAAAACAAGAGTAATAAGGAAGCAGCAGTAACAATGGTCAGAGAGGTCTGTAAATAAGTGTGCAAACTGATACACAGAAACTGAAATTTTGAAAGCACTTTTTTGTGACCCTCTGCAGATCGAAGGGACCTAAATTGTCCCAAAAAGAAGTGATAAAGAAGGTTGTTTGGTGCTGAGGACACTGAAAAGCAGTGTTGTTTGTGATGACCAAAAACAGAGGTTGTTTGGTTTGTTGTTGTTGCCCTCTTGATCCTTCTCTTCATTTAGTTTAAAAAATTGATTATTGTTTGTTTGGTAGCTCCCATTCCATTTATTAGGTAATATAAAAGGGCCTCAGAATGAGATGAAGAGTTGTTGAATGGGAAGGGTGGATTTGAGGTTAAAATTGGAGGCAAAAATGACT

Coding sequence (CDS)

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGGAAACCCTATCATCTTCCCAAAATACCTCTCCATTTCCCCTCTAAGCTAAAATTCATCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTCCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCAGAGAAGTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCGCTGTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAA

Protein sequence

MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

Homology

[Close]

BLAST of Carg08004 vs. NCBI nr
Match: XP_022941727.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 347.1 bits (889), Expect = 4.1e-92
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60

Query: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGVSKYLQNEKLKGDKS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Carg08004 vs. NCBI nr
Match: XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.1 bits (884), Expect = 1.5e-91
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQIIHHSPSSFTRKPYHLPK PLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60

Query: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGVSKYLQNEKLKGDKS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Carg08004 vs. NCBI nr
Match: XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 333.2 bits (853), Expect = 6.1e-88
Identity = 191/197 (96.95%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQIIHHSPSSFTRKPYHLPK PL+FPSK KFIIKSQ+PSESEKPISKTVDDA VGTSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60

Query: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
           AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ
Sbjct: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           GKNESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGVSKYLQNEKLKGDKS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Carg08004 vs. NCBI nr
Match: XP_004148133.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hypothetical protein Csa_3G176310 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 152/197 (77.16%), Postives = 164/197 (83.25%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
            QGFGS S QS                  GKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  PQGFGSSSPQS----TSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVLKYLQNEKIKDEKS 193

[Close]

BLAST of Carg08004 vs. NCBI nr
Match: XP_008439106.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 161/203 (79.31%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPV---- 60
           MALQI+HHSPSSFT+KPYHLP   LHF SK KFIIKSQNPSESEKPISK VDDAP+    
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  --GTSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S Q    XXXXXXXXX      GKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  KPSTSSPQGFGSSSPQ----XXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
           +  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKLKGDKS 198
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Carg08004 vs. TAIR10
Match: AT5G51545.1 (low psii accumulation2)

HSP 1 Score: 148.7 bits (374), Expect = 3.8e-36
Identity = 111/196 (56.63%), Postives = 131/196 (66.84%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI  HSP SF+ +PYHL           +F IK QN S+ E   S T +D P     
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIE---SDTTED-PSRXXX 60

Query: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
                      XXXXXXXXXXXXXXXXXX    +  + RR+PVEKPVF+ E      +EQ
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREVNRRAPVEKPVFMSEEGAAKAEEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
            +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE+ DK FVKY+YP FTP+V LFVAGT A
Sbjct: 121 RQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTA 180

Query: 181 YGVSKYLQNEKLKGDK 197
           YGV KY+QNEK+KG +
Sbjct: 181 YGVLKYIQNEKMKGQE 185

[Close]

BLAST of Carg08004 vs. Swiss-Prot
Match: sp|F4KDA6|LPA2_ARATH (Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.9e-35
Identity = 111/196 (56.63%), Postives = 131/196 (66.84%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI  HSP SF+ +PYHL           +F IK QN S+ E   S T +D P     
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIE---SDTTED-PSRXXX 60

Query: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
                      XXXXXXXXXXXXXXXXXX    +  + RR+PVEKPVF+ E      +EQ
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREVNRRAPVEKPVFMSEEGAAKAEEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
            +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE+ DK FVKY+YP FTP+V LFVAGT A
Sbjct: 121 RQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTA 180

Query: 181 YGVSKYLQNEKLKGDK 197
           YGV KY+QNEK+KG +
Sbjct: 181 YGVLKYIQNEKMKGQE 185

[Close]

BLAST of Carg08004 vs. TrEMBL
Match: tr|A0A0A0L8E3|A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 7.1e-77
Identity = 152/197 (77.16%), Postives = 164/197 (83.25%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  AQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
            QGFGS S QS                  GKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  PQGFGSSSPQS----TSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVLKYLQNEKIKDEKS 193

[Close]

BLAST of Carg08004 vs. TrEMBL
Match: tr|A0A1S3AXX6|A0A1S3AXX6_CUCME (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 7.4e-74
Identity = 161/203 (79.31%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPV---- 60
           MALQI+HHSPSSFT+KPYHLP   LHF SK KFIIKSQNPSESEKPISK VDDAP+    
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  --GTSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S Q    XXXXXXXXX      GKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  KPSTSSPQGFGSSSPQ----XXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
           +  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKLKGDKS 198
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Carg08004 vs. TrEMBL
Match: tr|A0A2I4H743|A0A2I4H743_9ROSI (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC109014097 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.7e-50
Identity = 124/204 (60.78%), Postives = 146/204 (71.57%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPY-HLPKIPL-HFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT 60
           MAL+I  HS SSF  KPY HLP+  L   P+  K  +KSQNPSE++KP +   + + V T
Sbjct: 1   MALRI--HSVSSFANKPYPHLPRTLLFQSPTIPKLTVKSQNPSETQKPTTNVDETSSVAT 60

Query: 61  ------SSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEV 120
                  +  GFGS +S S           XXXXXXX   +RASIIRRSP+EKP FV + 
Sbjct: 61  PPNKTSPAGLGFGSYASSSPSSKPNLSTVSXXXXXXXXXXERASIIRRSPIEKPAFVTQE 120

Query: 121 DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVS 180
           D+   KE+ +NES FLLTWLGLG +ILVEGI+LAASGFLPE+WDKFFVKYLYPSFTPTV 
Sbjct: 121 DKVEAKEENRNESAFLLTWLGLGGIILVEGILLAASGFLPEEWDKFFVKYLYPSFTPTVF 180

Query: 181 LFVAGTVAYGVSKYLQNEKLKGDK 197
           LFVAGTVAYGVSKYLQN+KLK +K
Sbjct: 181 LFVAGTVAYGVSKYLQNDKLKDEK 202

[Close]

BLAST of Carg08004 vs. TrEMBL
Match: tr|A0A2P5EVB7|A0A2P5EVB7_9ROSA (Protein LOW PSII ACCUMULATION OS=Trema orientalis OX=63057 GN=TorRG33x02_148060 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-49
Identity = 117/197 (59.39%), Postives = 133/197 (67.51%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQN---PSESEKPISKTVDDAPVG 60
           MALQI  H P SF  KPY LP+   HFP+K  F +KSQN   P ES   +S+    A   
Sbjct: 1   MALQI--HCPPSFGPKPYRLPR---HFPAKTHFTVKSQNQSDPPESTVKVSENPVQAKKP 60

Query: 61  TSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEV-DEEA 120
            S   GFGS  ++                   GKR+RASIIRRSPVEKP F     D+E 
Sbjct: 61  ASQGLGFGSSPAEE-----NATPASTTKKKRKGKRERASIIRRSPVEKPAFASAAGDDEK 120

Query: 121 IKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVA 180
            KE+G+NES FLL WLGLG +ILV+GI+LAASGFLPE+WDKFFVKYLYPSFTPTV LFVA
Sbjct: 121 AKERGRNESAFLLAWLGLGGIILVQGILLAASGFLPEEWDKFFVKYLYPSFTPTVVLFVA 180

Query: 181 GTVAYGVSKYLQNEKLK 194
           GTVAYGVSKYLQNE+LK
Sbjct: 181 GTVAYGVSKYLQNEELK 187

[Close]

BLAST of Carg08004 vs. TrEMBL
Match: tr|M5X190|M5X190_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G280700 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 115/199 (57.79%), Postives = 133/199 (66.83%), Query Frame = 0


Query: 1   MALQIIHHSPSSFTRKPY-HLPKIP-LHFPSKLKFIIKSQNPSESEKPISKTVDDAP-VG 60
           M LQI  HSPSSFT KPY HLP  P LHF  + +F +K Q PSE  KP ++T   +P   
Sbjct: 1   MGLQI--HSPSSFTSKPYHHLPHTPLLHFSVRTQFTVKLQTPSEPSKPKAETTQASPKKP 60

Query: 61  TSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDEEAI 120
           TS+  GFGS  S                     K++R  +IRRSPVEKP+   E DE   
Sbjct: 61  TSAGLGFGSSPSS---------PTTQNVTSVPNKKKR--VIRRSPVEKPLLYSEEDEAKA 120

Query: 121 KEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAG 180
           KE G NES F+L WLGLG VIL +G++LAASGFLPE+WDKFFVKYLYPSFTPTV LFVAG
Sbjct: 121 KEMGTNESAFVLAWLGLGGVILAQGLLLAASGFLPEEWDKFFVKYLYPSFTPTVGLFVAG 180

Query: 181 TVAYGVSKYLQNEKLKGDK 197
           +VAYGV KYLQNE+LKG K
Sbjct: 181 SVAYGVLKYLQNEELKGKK 186

The following BLAST results are available for this feature:

BLAST of Carg08004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941727.1	4.1e-92	100.00	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata]	[more]
XP_023554492.1	1.5e-91	99.49	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022973018.1	6.1e-88	96.95	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]	[more]
XP_004148133.1	1.1e-76	77.16	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN...	[more]
XP_008439106.1	1.1e-73	79.31	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]	[more]

BLAST of Carg08004 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51545.1	3.8e-36	56.63	low psii accumulation2	[more]

BLAST of Carg08004 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4KDA6\|LPA2_ARATH	6.9e-35	56.63	Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg08004 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8E3\|A0A0A0L8E3_CUCSA	7.1e-77	77.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1	[more]
tr\|A0A1S3AXX6\|A0A1S3AXX6_CUCME	7.4e-74	79.31	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2I4H743\|A0A2I4H743_9ROSI	5.7e-50	60.78	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC1...	[more]
tr\|A0A2P5EVB7\|A0A2P5EVB7_9ROSA	3.7e-49	59.39	Protein LOW PSII ACCUMULATION OS=Trema orientalis OX=63057 GN=TorRG33x02_148060 ...	[more]
tr\|M5X190\|M5X190_PRUPE	1.2e-47	57.79	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G280700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038789	LPA2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08004-RA	Carg08004-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..84
IPR038789	Protein LOW PSII ACCUMULATION 2 like	PANTHER	PTHR37385	FAMILY NOT NAMED	coord: 7..193

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08004	Cla006258	Watermelon (97103) v1	carwmB0373
Carg08004	Csa3G176310	Cucumber (Chinese Long) v2	carcuB0401
Carg08004	MELO3C006826	Melon (DHL92) v3.5.1	carmeB0381
Carg08004	ClCG05G007450	Watermelon (Charleston Gray)	carwcgB0372
Carg08004	CSPI03G16070	Wild cucumber (PI 183967)	carcpiB0406
Carg08004	Cucsa.251500	Cucumber (Gy14) v1	carcgyB0437
Carg08004	CmaCh04G003260	Cucurbita maxima (Rimu)	carcmaB0529
Carg08004	CmoCh04G003420	Cucurbita moschata (Rifu)	carcmoB0514
Carg08004	Lsi05G013140	Bottle gourd (USVL1VR-Ls)	carlsiB345
Carg08004	Cp4.1LG01g03710	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08004	CsGy3G016170	Cucumber (Gy14) v2	carcgybB0381
Carg08004	MELO3C006826.2	Melon (DHL92) v3.6.1	carmedB0385
Carg08004	CsaV3_3G016270	Cucumber (Chinese Long) v3	carcucB0404
Carg08004	Cla97C05G089260	Watermelon (97103) v2	carwmbB0398
Carg08004	Bhi01G000910	Wax gourd	carwgoB0461

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08004	Silver-seed gourd	carcarB406
Carg08004	Cucurbita maxima (Rimu)	carcmaB0526
Carg08004	Cucurbita moschata (Rifu)	carcmoB0509
Carg08004	Cucurbita pepo (Zucchini)	carcpeB0523