MELO3C006826.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C006826.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein LOW PSII ACCUMULATION 2, chloroplastic
Locationchr06 : 6427425 .. 6429826 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGGAACAATAAATTTTGCTAATTCCCAATTGAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCGTCTGAATCTGAGAAACCCATTTCCAAAATTGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATCTACCTCATCGCCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGTCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTATGACTTCTGTATCTAATTTTTGTTCATTGCAATCTGAATTTCGGAATTTTGCTTTGTGAAAAATCAGGTTGTTGTAGTTGTTGTTCTGAGACCTGTAGTAGTCAAATTCCGATTCGTGTAGGATTTATTCCTTAAGACGTGGAAGTAGAAATTTTGAAACCATAGTCTGAACGTTAGGCGAACTGTGAAGGGAATTACTGTTTTGGCAAGATTGTGGTTTGAAATTAGATTATATGTTGAAAAACCCGAAAATAAGTTATGAAATGAAAAGTATTATAATCTAGGCCCCCTTCGTATGGTGTCGTGAATAGCATTGGTAGTTCTTCGATCACCAATCTTACTTTCTTTCTTTCGAAGTGCATATTTGGATTGTAAAATTAGGGCAACAGTCCATTACCGTTTATGAATAAACTAATGTTATGGAAGAGTTATCCAAAGCTAAGGATTTGAGTCGAGAGTAGATGTACATTGCTCTCATTGTTACTTTCTTTTGGTAAGAAGATTTGTCTTCAGTGTTTGCCTCACCAGTTATTTTATGTTCTTTAGTGTGATGGAAAGGTGATCTTTTGATAGTGGATTATAGATTCCCCATGTCCTCCTCTAGCAAATATATTGCATAAATATCTTACAATGCTTATTCATATATTAAAGTATAGTAACATAGACTTCCTTTTAGTTTATGATTTTCCGATCAAAATAAGATGCTATGATTTTGCTGGCCTTGTGATGATTAATTCGTCTGGAAGACCATCAACTAACTGGTCTATGTTTTGAATCGTATTTGCTTTGCTGTGTTACTTCATAAATGAATTTGACTAAATTACTGCGGTGCTAATTTATCTTTAATATTTGCTGGTGGTCCATTGAAATGGGAATCCACTTAACTGAACTTAACTTAACTCTTTTGGATTGTCCACCTTTTCAGATTCTAGACAGTTTTTCAGTTAGATTGTCATCCTTTCCAAATTGTTCCTCTAGTTAATGGTTCTGCAAATTATCATCCCAGCCTTGACTTCCATTTGGTATCCTTAAGGTTAATGTAGGTAGATAAGATCGGGCATTGTCATTTGACTCTCAAGTTAAATCCATTGTTTTCATGAAACCTTTATTTTGAAGCTTGCTTGATTAAGACTTACGAGTTGTTGTCTAGAGTTCAATGGTTTGACACTTCATGCTTATATCTGCAATTGAAAACGTACAACCATGTACGTCATTTTTTGTTAATTCTACCATCAAACTAATTGAAAGTGATAGCTATTGTCATGTGGACGAAATGTAGTGAACTTCCACTTCTATATCATTGAATTGTTAGATGGCTCTAAACATGTTAAATATTTCCATGCTTTCATTTGACCAGTACGAATATGCATTTGGTTTGACCGAGTTTTGAGCTATTTTCAGTGTAAAAATTTTGATGTACAATTCCTTTCGTTTGATGAATATGGTGTGCATAGTTCATGTTTTCCTTTCACTTCCATCCACCACCACAACTAATTGGTTGATGTGCACCTGCAGGTTTCTTACCAGAAGAGTGGGACAGGCTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTGATCCTTTTTGCGATGCTTTGTATTTGGTGTGTAGACCTGAAAAATCCCAAGTGCCTATAGATCTTGTTTATATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATCTTTTGAGCTCAAAAGCAAATAAGATGCTGTTGTTGAATCCTAGGAAACTCTTTCCCATCATTATTATTTTTGGGCTTTAATTTATCGACAATAATCTTCTGATAGACCC

mRNA sequence

AAGGGAACAATAAATTTTGCTAATTCCCAATTGAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCGTCTGAATCTGAGAAACCCATTTCCAAAATTGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATCTACCTCATCGCCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGTCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTTTCTTACCAGAAGAGTGGGACAGGCTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTGATCCTTTTTGCGATGCTTTGTATTTGGTGTGTAGACCTGAAAAATCCCAAGTGCCTATAGATCTTGTTTATATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATCTTTTGAGCTCAAAAGCAAATAAGATGCTGTTGTTGAATCCTAGGAAACTCTTTCCCATCATTATTATTTTTGGGCTTTAATTTATCGACAATAATCTTCTGATAGACCC

Coding sequence (CDS)

ATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCGTCTGAATCTGAGAAACCCATTTCCAAAATTGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATCTACCTCATCGCCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGTCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTTTCTTACCAGAAGAGTGGGACAGGCTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAA

Protein sequence

MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Homology
[Close]
BLAST of MELO3C006826.2 vs. NCBI nr
Match: XP_008439106.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 365.2 bits (936), Expect = 1.5e-97
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
           KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK
Sbjct: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]
BLAST of MELO3C006826.2 vs. NCBI nr
Match: XP_004148133.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hypothetical protein Csa_3G176310 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 1.5e-89
Identity = 175/199 (87.94%), Postives = 182/199 (91.46%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
              TSSPQGFGSSSPQ         KS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

[Close]
BLAST of MELO3C006826.2 vs. NCBI nr
Match: XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 9.5e-73
Identity = 161/203 (79.31%), Postives = 170/203 (83.74%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI+HHSPSSFT+KPYHLP   LHF SK KFIIKSQNPSESEKPISK VDDAP+    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPV---- 60

Query: 61  KPSTSSPQGFGSSSPQ----XXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S Q    XXXXXXXXX      GKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180
           +  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]
BLAST of MELO3C006826.2 vs. NCBI nr
Match: XP_022941727.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 282.0 bits (720), Expect = 1.6e-72
Identity = 161/203 (79.31%), Postives = 170/203 (83.74%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI+HHSPSSFT+KPYHLP   LHF SK KFIIKSQNPSESEKPISK VDDAP+    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPV---- 60

Query: 61  KPSTSSPQGFGSSSPQ----XXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S Q    XXXXXXXXX      GKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180
           +  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]
BLAST of MELO3C006826.2 vs. NCBI nr
Match: XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 1.4e-71
Identity = 159/203 (78.33%), Postives = 169/203 (83.25%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI+HHSPSSFT+KPYHLP   L+F SKPKFIIKSQ+PSESEKPISK VDDA +    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAV---- 60

Query: 61  KPSTSSPQGFGSSSPQ----XXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S Q    XXXXXXXXX      GKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180
           +  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE WD+ FVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]
BLAST of MELO3C006826.2 vs. TAIR10
Match: AT5G51545.1 (low psii accumulation2)

HSP 1 Score: 151.8 bits (382), Expect = 4.6e-37
Identity = 105/198 (53.03%), Postives = 128/198 (64.65%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI  HSP SF+ +PYHL       +  P+F IK QN S+ E   S   +D       
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIE---SDTTEDPSRXXXX 60

Query: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
                           XXXXXXXXX       KR+   + RR+PVEKPVF+ E     A+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRE---VNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG+VIL+EGI+LAASGFLPEE D+LFVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 199
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

[Close]
BLAST of MELO3C006826.2 vs. Swiss-Prot
Match: sp|F4KDA6|LPA2_ARATH (Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.3e-36
Identity = 105/198 (53.03%), Postives = 128/198 (64.65%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI  HSP SF+ +PYHL       +  P+F IK QN S+ E   S   +D       
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIE---SDTTEDPSRXXXX 60

Query: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
                           XXXXXXXXX       KR+   + RR+PVEKPVF+ E     A+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRE---VNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG+VIL+EGI+LAASGFLPEE D+LFVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 199
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

[Close]
BLAST of MELO3C006826.2 vs. TrEMBL
Match: tr|A0A1S3AXX6|A0A1S3AXX6_CUCME (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 9.6e-98
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
           KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK
Sbjct: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]
BLAST of MELO3C006826.2 vs. TrEMBL
Match: tr|A0A0A0L8E3|A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 9.7e-90
Identity = 175/199 (87.94%), Postives = 182/199 (91.46%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
              TSSPQGFGSSSPQ         KS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

[Close]
BLAST of MELO3C006826.2 vs. TrEMBL
Match: tr|A0A2I4H743|A0A2I4H743_9ROSI (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC109014097 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.5e-50
Identity = 123/206 (59.71%), Postives = 146/206 (70.87%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPY-HLPNPSLHFS-SKPKFIIKSQNPSESEKPISKIVDDAPIAT 60
           MAL+I  HS SSF  KPY HLP   L  S + PK  +KSQNPSE++KP + + + + +AT
Sbjct: 1   MALRI--HSVSSFANKPYPHLPRTLLFQSPTIPKLTVKSQNPSETQKPTTNVDETSSVAT 60

Query: 61  SSKPSTSSPQGFG-----SSSP-QXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVG 120
              P+ +SP G G     SSSP          X         +RASIIRRSP+EKP FV 
Sbjct: 61  --PPNKTSPAGLGFGSYASSSPSSKPNLSTVSXXXXXXXXXXERASIIRRSPIEKPAFVT 120

Query: 121 EVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPT 180
           + D+  AKE++RNES FLLTWLGLG +ILVEGI+LAASGFLPEEWD+ FVKYLYPSFTPT
Sbjct: 121 QEDKVEAKEENRNESAFLLTWLGLGGIILVEGILLAASGFLPEEWDKFFVKYLYPSFTPT 180

Query: 181 VSLFVAGTVAYGVLKYLQNEKIKDEK 199
           V LFVAGTVAYGV KYLQN+K+KDEK
Sbjct: 181 VFLFVAGTVAYGVSKYLQNDKLKDEK 202

[Close]
BLAST of MELO3C006826.2 vs. TrEMBL
Match: tr|A0A2P5EVB7|A0A2P5EVB7_9ROSA (Protein LOW PSII ACCUMULATION OS=Trema orientalis OX=63057 GN=TorRG33x02_148060 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 116/199 (58.29%), Postives = 138/199 (69.35%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
           MALQI  H P SF  KPY LP    HF +K  F +KSQN S+  +   K+ ++      +
Sbjct: 1   MALQI--HCPPSFGPKPYRLPR---HFPAKTHFTVKSQNQSDPPESTVKVSEN---PVQA 60

Query: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEV-DEQVA 120
           K   S   GFGSS  +         K  K+KGKR+RASIIRRSPVEKP F     D++ A
Sbjct: 61  KKPASQGLGFGSSPAEENATPASTTKK-KRKGKRERASIIRRSPVEKPAFASAAGDDEKA 120

Query: 121 KEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAG 180
           KE+ RNES FLL WLGLG +ILV+GI+LAASGFLPEEWD+ FVKYLYPSFTPTV LFVAG
Sbjct: 121 KERGRNESAFLLAWLGLGGIILVQGILLAASGFLPEEWDKFFVKYLYPSFTPTVVLFVAG 180

Query: 181 TVAYGVLKYLQNEKIKDEK 199
           TVAYGV KYLQNE++KD++
Sbjct: 181 TVAYGVSKYLQNEELKDQE 190

[Close]
BLAST of MELO3C006826.2 vs. TrEMBL
Match: tr|A0A251J9G9|A0A251J9G9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G034000 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 120/207 (57.97%), Postives = 145/207 (70.05%), Query Frame = 0 

Query: 1   MALQILHHSPSSFTKKPYH--LPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIAT 60
           MALQI  H PS   KK YH  L  P L   S+PKF I+SQ  + +    ++  +++P+  
Sbjct: 1   MALQI--HLPSPLAKKSYHHLLQAPLLLCRSRPKFTIQSQKTTSN----TESTNESPV-- 60

Query: 61  SSKPSTSSPQGFGSSS---PQXXXXXXXXXKSV----KQKGKRQRASIIRRSPVEKPVFV 120
             K STS   GFG+ S   P           +V    KQ+ KR+RASIIRR+PVEKP FV
Sbjct: 61  -PKKSTSPGLGFGTPSSVAPTKSSSTKAGPSTVSTKRKQRDKRERASIIRRTPVEKPAFV 120

Query: 121 GEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTP 180
            + DE  AKEQS+NES FLL WLGLG +ILVEGIVLAASGFLP++WD+ FVKYLYPSFTP
Sbjct: 121 SQEDEAKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPDKWDKFFVKYLYPSFTP 180

Query: 181 TVSLFVAGTVAYGVLKYLQNEKIKDEK 199
           TV+LFVAGTVAYGVLKYLQNE++KD+K
Sbjct: 181 TVALFVAGTVAYGVLKYLQNEELKDQK 198

The following BLAST results are available for this feature:
BLAST of MELO3C006826.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439106.11.5e-97100.00PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo][more]
XP_004148133.11.5e-8987.94PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN... [more]
XP_023554492.19.5e-7379.31protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022941727.11.6e-7279.31protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata][more]
XP_022973018.11.4e-7178.33protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima][more]
BLAST of MELO3C006826.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51545.14.6e-3753.03low psii accumulation2[more]
BLAST of MELO3C006826.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4KDA6|LPA2_ARATH8.3e-3653.03Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G... [more]
BLAST of MELO3C006826.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AXX6|A0A1S3AXX6_CUCME9.6e-98100.00protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A0A0L8E3|A0A0A0L8E3_CUCSA9.7e-9087.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1[more]
tr|A0A2I4H743|A0A2I4H743_9ROSI7.5e-5059.71protein LOW PSII ACCUMULATION 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC1... [more]
tr|A0A2P5EVB7|A0A2P5EVB7_9ROSA2.4e-4858.29Protein LOW PSII ACCUMULATION OS=Trema orientalis OX=63057 GN=TorRG33x02_148060 ... [more]
tr|A0A251J9G9|A0A251J9G9_MANES4.1e-4857.97Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G034000 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038789LPA2-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0044763 single-organism cellular process
biological_process GO:0016070 RNA metabolic process
biological_process GO:0009657 plastid organization
biological_process GO:0010467 gene expression
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009902 chloroplast relocation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0042651 thylakoid membrane
cellular_component GO:0016020 membrane
cellular_component GO:0044424 intracellular part
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006826.2.1MELO3C006826.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..86
IPR038789Protein LOW PSII ACCUMULATION 2 likePANTHERPTHR37385FAMILY NOT NAMEDcoord: 7..196

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006826.2Csa3G176310Cucumber (Chinese Long) v2cumedB223
MELO3C006826.2CSPI03G16070Wild cucumber (PI 183967)cpimedB224
MELO3C006826.2Cucsa.251500Cucumber (Gy14) v1cgymedB432
MELO3C006826.2CmaCh04G003260Cucurbita maxima (Rimu)cmamedB779
MELO3C006826.2CmoCh04G003420Cucurbita moschata (Rifu)cmomedB777
MELO3C006826.2CsGy3G016170Cucumber (Gy14) v2cgybmedB201
MELO3C006826.2Cla006258Watermelon (97103) v1medwmB447
MELO3C006826.2ClCG05G007450Watermelon (Charleston Gray)medwcgB416
MELO3C006826.2Cla97C05G089260Watermelon (97103) v2medwmbB423
MELO3C006826.2Bhi01G000910Wax gourdmedwgoB530
MELO3C006826.2Carg08004Silver-seed gourdcarmedB0385
MELO3C006826.2CsaV3_3G016270Cucumber (Chinese Long) v3cucmedB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006826.2Cucumber (Gy14) v2cgybmedB353
MELO3C006826.2Cucumber (Gy14) v1cgymedB496
MELO3C006826.2Cucurbita maxima (Rimu)cmamedB320
MELO3C006826.2Cucurbita maxima (Rimu)cmamedB344
MELO3C006826.2Cucurbita maxima (Rimu)cmamedB661
MELO3C006826.2Cucurbita maxima (Rimu)cmamedB665
MELO3C006826.2Cucurbita maxima (Rimu)cmamedB954
MELO3C006826.2Cucurbita moschata (Rifu)cmomedB305
MELO3C006826.2Cucurbita moschata (Rifu)cmomedB331
MELO3C006826.2Cucurbita moschata (Rifu)cmomedB649
MELO3C006826.2Cucurbita moschata (Rifu)cmomedB654
MELO3C006826.2Cucurbita moschata (Rifu)cmomedB944
MELO3C006826.2Cucurbita pepo (Zucchini)cpemedB212
MELO3C006826.2Cucurbita pepo (Zucchini)cpemedB233
MELO3C006826.2Cucurbita pepo (Zucchini)cpemedB483
MELO3C006826.2Cucurbita pepo (Zucchini)cpemedB831
MELO3C006826.2Cucurbita pepo (Zucchini)cpemedB835
MELO3C006826.2Wild cucumber (PI 183967)cpimedB399
MELO3C006826.2Cucumber (Chinese Long) v2cumedB391
MELO3C006826.2Melon (DHL92) v3.6.1medmedB013
MELO3C006826.2Bottle gourd (USVL1VR-Ls)lsimedB036
MELO3C006826.2Bottle gourd (USVL1VR-Ls)lsimedB397
MELO3C006826.2Watermelon (Charleston Gray)medwcgB408
MELO3C006826.2Watermelon (97103) v1medwmB467
MELO3C006826.2Silver-seed gourdcarmedB0869
MELO3C006826.2Silver-seed gourdcarmedB0918
MELO3C006826.2Cucumber (Chinese Long) v3cucmedB407
MELO3C006826.2Watermelon (97103) v2medwmbB412