CmoCh04G003420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Low psii accumulation protein, putative
Location	Cmo_Chr04 : 1676394 .. 1678105 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCTAATCTGAAACAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGGAAACCCTATCATCTTCCCAAAATACCTCTCCATTTCCCCTCTAAGCTAAAATTCATCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTCCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTACGAATTCTTTTCCATAATTATGTAAATTGGAACTTGAACTTCGGAATTGTACTGTTTCCATTTGCGATGGTGGGATTTTCTTTTTCTTGTTGGGGTTTCCTGTGATTGAGTTGTTGATCTGAAACGTGATAGTAGTTAAAATCAGATCCGAATAGGACTTTTCTTTGAGTCGTGGATTAGAAGTTTGAAACCACATTCCTAACATTAGACGAACTGTGATGATGGGTTGAATTTTTGTCAGTTTCTGTTGAAAAGGATTGAAATTATGAAATGAATGATATTATGATCTATGCCCCCTCCATTTCGTGTTGTGAATAGCAGTGGCGGTTGTTCAATCACCATTATCAGTGTCATTGCGCATATTTGGAGTGTTAATATAAGGCAACATTTCATAACAATTCATGACTAAGCTAATGTTATGCATTGAATTTAAGGGTTTCCAATCAAAATAAGATGCTAATATCATCCTGGCATTAACTTCCATTTGAAATCCGTAACCTAGTGTAGCTGGATTAGATTGGGCAATCAAAAGTTCTGTTGTTCAGAGCCTGTGTTTCTAGCACCTTTCATAGTTTCATGTGAACAATATGTTGTGAACTTTTTCTATTTTATACCATCGAATTGTTTAATGGTTCTAATATGGGAAATATATTCTTTGCTTTTTCAGCCTTTTTTCAGTTAGAAAATTTGATGCCTAATTGATTTGATGAATACAATATCCACAGTTAGGTATTTTCATTTCACTTTTACCACCACAATTAATTGGTTGATGTGCACTTTTGCAGGTTTCTTACCAGAGAAGTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCGCTGTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATTTGGTATGGTGACCTGAAATGTGTCAAGTGCCTATTGATTGTGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTCTTTTAGCTCAAAGGTAAATGAGATGCTGTTGTTGGATCCTCAGAAACACCTTGCCATCAATTTATTAGTTTCTCTGGGCTTTAACTAATTATGTTCGATGCTCGAAGATCCTTCTGTTTGTGTATATGGCATTCCCTTGTGTTCTGATTTTTCATCTCCTTTCTTCTTCCAAAC

mRNA sequence

AATTCTAATCTGAAACAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGGAAACCCTATCATCTTCCCAAAATACCTCTCCATTTCCCCTCTAAGCTAAAATTCATCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTCCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCAGAGAAGTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCGCTGTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATTTGGTATGGTGACCTGAAATGTGTCAAGTGCCTATTGATTGTGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTCTTTTAGCTCAAAGGTAAATGAGATGCTGTTGTTGGATCCTCAGAAACACCTTGCCATCAATTTATTAGTTTCTCTGGGCTTTAACTAATTATGTTCGATGCTCGAAGATCCTTCTGTTTGTGTATATGGCATTCCCTTGTGTTCTGATTTTTCATCTCCTTTCTTCTTCCAAAC

Coding sequence (CDS)

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGGAAACCCTATCATCTTCCCAAAATACCTCTCCATTTCCCCTCTAAGCTAAAATTCATCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTCCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCAGAGAAGTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCGCTGTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAA

Homology

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BLAST of CmoCh04G003420 vs. Swiss-Prot
Match: LPA2_ARATH (Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.8e-42
Identity = 106/196 (54.08%), Postives = 133/196 (67.86%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI  HSP SF+ +PYHL           +F IK QN S+ E   ++    +   +SS
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIESDTTEDPSRSKNSSSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
             GFGS +S S+ + K S  AT+   K KGKR+   + RR+PVEKPVF+ E      +EQ
Sbjct: 61  GVGFGSPASSSSPAKKLSA-ATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
            +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE+ DK FVKY+YP FTP+V LFVAGT A
Sbjct: 121 RQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTA 180

Query: 181 YGVSKYLQNEKLKGDK 197
           YGV KY+QNEK+KG +
Sbjct: 181 YGVLKYIQNEKMKGQE 185

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BLAST of CmoCh04G003420 vs. TrEMBL
Match: A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 8.9e-82
Identity = 161/197 (81.73%), Postives = 177/197 (89.85%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
            QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVLKYLQNEKIKDEKS 193

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BLAST of CmoCh04G003420 vs. TrEMBL
Match: A0A067JS76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.7e-51
Identity = 129/199 (64.82%), Postives = 146/199 (73.37%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPY-HLPKIP-LHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT 60
           MALQI  +SPS  T+K Y HL   P L   +K K  I+SQNP+   +    T D A +  
Sbjct: 1   MALQI--YSPSCLTKKSYQHLLYAPVLLSKTKPKLRIQSQNPTTDTE---NTKDSATLKK 60

Query: 61  SSAQGFGSLSSQSTTSSKSSPKAT----TSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
           S+A+G G  SS    S+K+  KA+    TSK KQKGKR+RASIIRR+PVEKP FV +VDE
Sbjct: 61  STARGLGFGSSSPAASTKNPNKASASDVTSKKKQKGKRERASIIRRTPVEKPSFVSQVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
              KEQ KNES FLL WLGLG +ILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTV LF
Sbjct: 121 TKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLF 180

Query: 181 VAGTVAYGVSKYLQNEKLK 194
           VAGTVAYGV KYLQNEKLK
Sbjct: 181 VAGTVAYGVLKYLQNEKLK 194

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BLAST of CmoCh04G003420 vs. TrEMBL
Match: A0A061G053_THECC (Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-49
Identity = 124/195 (63.59%), Postives = 141/195 (72.31%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI  H+PSSFT   YH   I   FP  + F IKSQ P++  +P  +         + 
Sbjct: 1   MALQI--HTPSSFTNGLYHRNFI---FPKPI-FSIKSQKPTDDAEPSPEPSSTPKKPAAP 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGK--QKGKRQRASIIRRSPVEKPVFVGEVDEEAIK 120
            QGFGS SS S++SS  S K++ S GK  QKGKR RASIIRRSPVEKP FV + +E   +
Sbjct: 61  GQGFGS-SSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPAFVSKEEEAKAE 120

Query: 121 EQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ KNES FLL WLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTV LF+AGT
Sbjct: 121 EQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVLLFLAGT 180

Query: 181 VAYGVSKYLQNEKLK 194
           VAYGV KYLQNE LK
Sbjct: 181 VAYGVLKYLQNENLK 188

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BLAST of CmoCh04G003420 vs. TrEMBL
Match: W9S5C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 9.9e-49
Identity = 121/207 (58.45%), Postives = 140/207 (67.63%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVD-------- 60
           MAL I  + P SFT KPY LP  P+       F +KSQ  SE  K      D        
Sbjct: 1   MALHI--NCPPSFTAKPYRLPHTPV-----FHFTVKSQTSSEPPKSTVNPTDSVAPARPN 60

Query: 61  DAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV 120
           D P  +++  GFGS  S S+ S   + ++ +SK K+KGKR+RASIIRRSPVEKP F    
Sbjct: 61  DKPSSSTTGLGFGS--SASSPSPSPANESASSKKKRKGKRERASIIRRSPVEKPSFASAP 120

Query: 121 ---DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTP 180
              D+E +KE+G+NES FLL WLGLG +ILVEGIVLAASGFLPE+WDKFFVKYLYPSFTP
Sbjct: 121 TAEDDEKVKERGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTP 180

Query: 181 TVSLFVAGTVAYGVSKYLQNEKLKGDK 197
           TV LFVAGTV YGV KYLQNEKLK  K
Sbjct: 181 TVVLFVAGTVTYGVLKYLQNEKLKDQK 198

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BLAST of CmoCh04G003420 vs. TrEMBL
Match: M5X190_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012039mg PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-48
Identity = 118/199 (59.30%), Postives = 137/199 (68.84%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYH-LPKIPL-HFPSKLKFIIKSQNPSESEKPISKTVDDAP-VG 60
           M LQI  HSPSSFT KPYH LP  PL HF  + +F +K Q PSE  KP ++T   +P   
Sbjct: 1   MGLQI--HSPSSFTSKPYHHLPHTPLLHFSVRTQFTVKLQTPSEPSKPKAETTQASPKKP 60

Query: 61  TSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAI 120
           TS+  GFGS  S  TT +      T+   K+K       +IRRSPVEKP+   E DE   
Sbjct: 61  TSAGLGFGSSPSSPTTQN-----VTSVPNKKK------RVIRRSPVEKPLLYSEEDEAKA 120

Query: 121 KEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAG 180
           KE G NES F+L WLGLG VIL +G++LAASGFLPE+WDKFFVKYLYPSFTPTV LFVAG
Sbjct: 121 KEMGTNESAFVLAWLGLGGVILAQGLLLAASGFLPEEWDKFFVKYLYPSFTPTVGLFVAG 180

Query: 181 TVAYGVSKYLQNEKLKGDK 197
           +VAYGV KYLQNE+LKG K
Sbjct: 181 SVAYGVLKYLQNEELKGKK 186

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BLAST of CmoCh04G003420 vs. TAIR10
Match: AT5G51545.1 (AT5G51545.1 low psii accumulation2)

HSP 1 Score: 172.2 bits (435), Expect = 3.2e-43
Identity = 106/196 (54.08%), Postives = 133/196 (67.86%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI  HSP SF+ +PYHL           +F IK QN S+ E   ++    +   +SS
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIESDTTEDPSRSKNSSSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
             GFGS +S S+ + K S  AT+   K KGKR+   + RR+PVEKPVF+ E      +EQ
Sbjct: 61  GVGFGSPASSSSPAKKLSA-ATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
            +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE+ DK FVKY+YP FTP+V LFVAGT A
Sbjct: 121 RQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTA 180

Query: 181 YGVSKYLQNEKLKGDK 197
           YGV KY+QNEK+KG +
Sbjct: 181 YGVLKYIQNEKMKGQE 185

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BLAST of CmoCh04G003420 vs. NCBI nr
Match: gi|449460802|ref|XP_004148133.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 1.3e-81
Identity = 161/197 (81.73%), Postives = 177/197 (89.85%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
            QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVLKYLQNEKIKDEKS 193

[Close]

BLAST of CmoCh04G003420 vs. NCBI nr
Match: gi|659077251|ref|XP_008439106.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 2.6e-79
Identity = 162/203 (79.80%), Postives = 175/203 (86.21%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI+HHSPSSFT+KPYHLP   LHF SK KFIIKSQNPSESEKPISK VDDAP+ TSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  A------QGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
                  QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
           +  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKLKGDKS 198
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CmoCh04G003420 vs. NCBI nr
Match: gi|802769639|ref|XP_012090413.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas])

HSP 1 Score: 209.1 bits (531), Expect = 6.8e-51
Identity = 129/199 (64.82%), Postives = 146/199 (73.37%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPY-HLPKIP-LHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT 60
           MALQI  +SPS  T+K Y HL   P L   +K K  I+SQNP+   +    T D A +  
Sbjct: 1   MALQI--YSPSCLTKKSYQHLLYAPVLLSKTKPKLRIQSQNPTTDTE---NTKDSATLKK 60

Query: 61  SSAQGFGSLSSQSTTSSKSSPKAT----TSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
           S+A+G G  SS    S+K+  KA+    TSK KQKGKR+RASIIRR+PVEKP FV +VDE
Sbjct: 61  STARGLGFGSSSPAASTKNPNKASASDVTSKKKQKGKRERASIIRRTPVEKPSFVSQVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180
              KEQ KNES FLL WLGLG +ILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTV LF
Sbjct: 121 TKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLF 180

Query: 181 VAGTVAYGVSKYLQNEKLK 194
           VAGTVAYGV KYLQNEKLK
Sbjct: 181 VAGTVAYGVLKYLQNEKLK 194

[Close]

BLAST of CmoCh04G003420 vs. NCBI nr
Match: gi|1009123069|ref|XP_015878349.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 205.7 bits (522), Expect = 7.5e-50
Identity = 125/203 (61.58%), Postives = 144/203 (70.94%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDA--PVGT 60
           MALQI  HSPSS   KPY+L  +  H+P++  F I++QN SE  KP  K  +    P  T
Sbjct: 1   MALQI--HSPSSL--KPYNL--LQFHYPTRTHFTIRAQNTSEPSKPAVKVSETTVPPKKT 60

Query: 61  SS---AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVG--EVD 120
           SS     GFGS SS S++S+K + K+ T K K K KR+RASIIRRSPV KP F    E D
Sbjct: 61  SSPGPGLGFGSSSSSSSSSTKQNVKSVTDKNKGKRKRERASIIRRSPVGKPSFASSSEED 120

Query: 121 EEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSL 180
           E   KE+ KNES FLL WLGLG +ILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTV L
Sbjct: 121 EAKAKERSKNESAFLLAWLGLGGIILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVVL 180

Query: 181 FVAGTVAYGVSKYLQNEKLKGDK 197
           FVAGTV YGV KYLQNE+L   K
Sbjct: 181 FVAGTVTYGVLKYLQNEELNAKK 197

[Close]

BLAST of CmoCh04G003420 vs. NCBI nr
Match: gi|590671793|ref|XP_007038430.1| (Low psii accumulation2, putative [Theobroma cacao])

HSP 1 Score: 202.2 bits (513), Expect = 8.3e-49
Identity = 124/195 (63.59%), Postives = 141/195 (72.31%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
           MALQI  H+PSSFT   YH   I   FP  + F IKSQ P++  +P  +         + 
Sbjct: 1   MALQI--HTPSSFTNGLYHRNFI---FPKPI-FSIKSQKPTDDAEPSPEPSSTPKKPAAP 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGK--QKGKRQRASIIRRSPVEKPVFVGEVDEEAIK 120
            QGFGS SS S++SS  S K++ S GK  QKGKR RASIIRRSPVEKP FV + +E   +
Sbjct: 61  GQGFGS-SSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPAFVSKEEEAKAE 120

Query: 121 EQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ KNES FLL WLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTV LF+AGT
Sbjct: 121 EQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVLLFLAGT 180

Query: 181 VAYGVSKYLQNEKLK 194
           VAYGV KYLQNE LK
Sbjct: 181 VAYGVLKYLQNENLK 188

The following BLAST results are available for this feature:

BLAST of CmoCh04G003420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LPA2_ARATH	5.8e-42	54.08	Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 P...	[more]

BLAST of CmoCh04G003420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8E3_CUCSA	8.9e-82	81.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1	[more]
A0A067JS76_JATCU	4.7e-51	64.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1	[more]
A0A061G053_THECC	5.8e-49	63.59	Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1	[more]
W9S5C4_9ROSA	9.9e-49	58.45	Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1	[more]
M5X190_PRUPE	2.2e-48	59.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012039mg PE=4 SV=1	[more]

BLAST of CmoCh04G003420 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51545.1	3.2e-43	54.08	low psii accumulation2	[more]

BLAST of CmoCh04G003420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460802\|ref\|XP_004148133.1\|	1.3e-81	81.73	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]	[more]
gi\|659077251\|ref\|XP_008439106.1\|	2.6e-79	79.80	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]	[more]
gi\|802769639\|ref\|XP_012090413.1\|	6.8e-51	64.82	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]	[more]
gi\|1009123069\|ref\|XP_015878349.1\|	7.5e-50	61.58	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Ziziphus jujuba]	[more]
gi\|590671793\|ref\|XP_007038430.1\|	8.3e-49	63.59	Low psii accumulation2, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010467	gene expression
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009657	plastid organization
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003420.1	CmoCh04G003420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37385	FAMILY NOT NAMED	coord: 52..196 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G003420	Cucsa.251500	Cucumber (Gy14) v1	cgycmoB0716
CmoCh04G003420	CmaCh04G003260	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G003420	Cla006258	Watermelon (97103) v1	cmowmB702
CmoCh04G003420	Csa3G176310	Cucumber (Chinese Long) v2	cmocuB694
CmoCh04G003420	MELO3C006826	Melon (DHL92) v3.5.1	cmomeB685
CmoCh04G003420	ClCG05G007450	Watermelon (Charleston Gray)	cmowcgB664
CmoCh04G003420	CSPI03G16070	Wild cucumber (PI 183967)	cmocpiB704
CmoCh04G003420	Lsi05G013140	Bottle gourd (USVL1VR-Ls)	cmolsiB681
CmoCh04G003420	Cp4.1LG01g03710	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G003420	MELO3C006826.2	Melon (DHL92) v3.6.1	cmomedB777
CmoCh04G003420	CsaV3_3G016270	Cucumber (Chinese Long) v3	cmocucB0823
CmoCh04G003420	Cla97C05G089260	Watermelon (97103) v2	cmowmbB739
CmoCh04G003420	Bhi01G000910	Wax gourd	cmowgoB0852
CmoCh04G003420	CsGy3G016170	Cucumber (Gy14) v2	cgybcmoB394
CmoCh04G003420	Carg08004	Silver-seed gourd	carcmoB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G003420	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G003420	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G003420	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G003420	Silver-seed gourd	carcmoB1177