Cla97C05G089260 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G089260
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Location	Cla97Chr05 : 7473082 .. 7475403 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTACTATTTTTGTTACTAATTTTTGTTCATTGCAATTTGAACTTCAGAATTGTGTTTTGTGACAGTTGATGTTACGGTTTCCGTTCGAGTAATCAGGTTGTGATAGTAGTCAAATTCCGATTCATATAGGATGTATTTCTTAAGATGTGGAGGTAGAAGTTTGAAACCATAGTCCGAAAATAAGGCGAATCGTGAAGGGAATTACTATTTTGGCAAGATTGTGGGTTGAAATTAGATTATCTGTTGAAAAAACCTGAAAATCAGAAGCATTTGAGTTATGAAATGAAGAATATTATACTCTAGCCTCCTTCATTTCGTTTTGTGAATAGCTGTGGCAGATCTTCAATCACCAATCTTACTTTCTTACTATCGAAGTGCATATTTGGATTGTAAAGTTAGGAAACATTCCATAACCATTTATGAATATGCTAATGTAATGCAAGAGTTCTCCAAAGCTCAGGATGTGAGATGAATGTAGATGTACAGTGTCCTCATTGTTACTTTATTTTAGTGGGAATATTTGCTTTCAATGTTACCTCTCCAGTTACTGTATATTCTTTAGTGAAAGAAAGGTGATCTTTGGATATTGGATTGGATTTCCTTGGTCCTCCTCTCCCCCTGGCATGTGTACACGTGCTACGGTAGCATCAATTTGGTTGTTGATTTGGCCTTCCGACACCAATCACTTGTTGTGAGGCTCTAGATTTGTCCTCTAACAAATATATTTGCATAAACATCTTACAATGCTTATATAAAGGAAATTGTAGTAACATATCCTTCCTTTTAGTGTAGGATTTTCCAATCAAAATAAGATGCTTATGATTTTTTCTGGCCTTCTGATGATTAATTGTCTGGAAGACCCTCAAATAACTGGTCTATGTTTTGAAGCATGTTTGCTTTGCTATGTAACTTCATAATGAATTTGACTAAATTACTGCTAATTTATATTTGATATTTTCTGTTGTTTCTTTCAAATGAAAATTCACTTAACTTAACTGAACTTAACACGCAGTATTCAAATCCTCTTGTCTACTTAAGTCTTTAGAAATGTTCACCGTTTCAGATTTTAGACAGTTTTTCAGTTAGATTATCATCCTTTTCAACTAGTTCCTCTAGTTAATGGTTCTGCAAATTATCATCCCAGCCTCGACTTCCATTTGATATCCTTAAACCTAATGTAGCTGGATTAGATCGGGCAATATCCATTATACTATCTAAAAGGTTCTGATTGTTCAAATCCTGTTCTTTGACTCTCAAGTTAAGTCTTGGTTTTCACGAAAACCTTTATTTCAAAACTTGCTTGATTAATAGTTGTCTGGAGTTCAATGGTTTGACACTTCCGGCTTATATCTGCAACTGAAAACGTACCACAATGTACTTCATTATTATTATTTAATTATACCATCAAACTAATTGAACGTGGGAAAGTGGTAGCTATTTTTAAATCTGTAAGTGCCTTTCATAGTTTTATGTGGACATTGGACAATATGTAGTCAACTTCTTTCCACTTCTATACCATTGAATTGTTTGATGGCTCTAAATATGCGAAATATTTTCTTGCTTTTATTTGACTAGTACGAATATGCACTTGGTTTGACTGTGTTTTAAGCCTATTTTCAGTGTAAAAATTTTGATGTATAAATCCTTTGATGAATATGGTCTCATAGTTCATGTTTTCATTTCACTTCCACCTCCTCAACTTTGGTTGACGTGCACCTGCAGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA

mRNA sequence

ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA

Coding sequence (CDS)

ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA

Protein sequence

MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

Homology

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BLAST of Cla97C05G089260 vs. NCBI nr
Match: XP_008439106.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 178/199 (89.45%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           KPSTSSPQGFGSSSPQ         K+VKQKGKRQRASIIRRSPVEKPVFVGEVDE+ AK
Sbjct: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

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BLAST of Cla97C05G089260 vs. NCBI nr
Match: XP_004148133.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hypothetical protein Csa_3G176310 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 1.2e-88
Identity = 173/199 (86.93%), Postives = 187/199 (93.97%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDD+ +A   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
              TSSPQGFGSSSPQST+T+KS+PK++KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

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BLAST of Cla97C05G089260 vs. NCBI nr
Match: XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 282.0 bits (720), Expect = 1.6e-72
Identity = 156/203 (76.85%), Postives = 165/203 (81.28%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI+HHSPSSFTRKPYHLP   L+FPSKPKFIIKSQ+ SESEKPISK VDD+++    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAV---- 60

Query: 61  KPSTSSPQGFGSSSPQS----TTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S QS                  GKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Cla97C05G089260 vs. NCBI nr
Match: XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 1.6e-72
Identity = 157/203 (77.34%), Postives = 164/203 (80.79%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI+HHSPSSFTRKPYHLP   LHFPSK KFIIKSQN SESEKPISK VDD+ +    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPV---- 60

Query: 61  KPSTSSPQGFGSSSPQS----TTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S QS                  GKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Cla97C05G089260 vs. NCBI nr
Match: XP_022941727.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 2.8e-72
Identity = 157/203 (77.34%), Postives = 164/203 (80.79%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI+HHSPSSFTRKPYHLP   LHFPSK KFIIKSQN SESEKPISK VDD+ +    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPV---- 60

Query: 61  KPSTSSPQGFGSSSPQS----TTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S QS                  GKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSXXXXXXXXXXXXXXXXXXGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Cla97C05G089260 vs. TrEMBL
Match: tr|A0A1S3AXX6|A0A1S3AXX6_CUCME (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 7.4e-90
Identity = 178/199 (89.45%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           KPSTSSPQGFGSSSPQ         K+VKQKGKRQRASIIRRSPVEKPVFVGEVDE+ AK
Sbjct: 61  KPSTSSPQGFGSSSPQXXXXXXXXXKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Cla97C05G089260 vs. TrEMBL
Match: tr|A0A0A0L8E3|A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 8.2e-89
Identity = 173/199 (86.93%), Postives = 187/199 (93.97%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDD+ +A   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
              TSSPQGFGSSSPQST+T+KS+PK++KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

[Close]

BLAST of Cla97C05G089260 vs. TrEMBL
Match: tr|A0A2P5EVB7|A0A2P5EVB7_9ROSA (Protein LOW PSII ACCUMULATION OS=Trema orientalis OX=63057 GN=TorRG33x02_148060 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.8e-51
Identity = 124/199 (62.31%), Postives = 141/199 (70.85%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI  H P SF  KPY LP    HFP+K  F +KSQN S+   P    V  S     +
Sbjct: 1   MALQI--HCPPSFGPKPYRLPR---HFPAKTHFTVKSQNQSD---PPESTVKVSENPVQA 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEV-DEEAA 120
           K   S   GFGSS  +   T  S+ K  K+KGKR+RASIIRRSPVEKP F     D+E A
Sbjct: 61  KKPASQGLGFGSSPAEENATPASTTKK-KRKGKRERASIIRRSPVEKPAFASAAGDDEKA 120

Query: 121 KEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAG 180
           KE+ RNES FLL WLGLG +ILV+GI+LAASGFLPEEWDKFFVKYLYPSFTPTV LFVAG
Sbjct: 121 KERGRNESAFLLAWLGLGGIILVQGILLAASGFLPEEWDKFFVKYLYPSFTPTVVLFVAG 180

Query: 181 TVAYGVLKYLQNEKIKDEK 199
           TVAYGV KYLQNE++KD++
Sbjct: 181 TVAYGVSKYLQNEELKDQE 190

[Close]

BLAST of Cla97C05G089260 vs. TrEMBL
Match: tr|A0A2I4H743|A0A2I4H743_9ROSI (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC109014097 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.8e-51
Identity = 126/204 (61.76%), Postives = 149/204 (73.04%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPY-HLPNPSL-HFPSKPKFIIKSQNSSESEKPISKIVDDSSLAT 60
           MAL+I  HS SSF  KPY HLP   L   P+ PK  +KSQN SE++KP + + + SS+AT
Sbjct: 1   MALRI--HSVSSFANKPYPHLPRTLLFQSPTIPKLTVKSQNPSETQKPTTNVDETSSVAT 60

Query: 61  SSKPSTSSPQGFGS--SSPQSTTTNKS--SPKAVKQKGKRQRASIIRRSPVEKPVFVGEV 120
               ++ +  GFGS  SS  S+  N S  S          +RASIIRRSP+EKP FV + 
Sbjct: 61  PPNKTSPAGLGFGSYASSSPSSKPNLSTVSXXXXXXXXXXERASIIRRSPIEKPAFVTQE 120

Query: 121 DEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVS 180
           D+  AKE++RNES FLLTWLGLG +ILVEGI+LAASGFLPEEWDKFFVKYLYPSFTPTV 
Sbjct: 121 DKVEAKEENRNESAFLLTWLGLGGIILVEGILLAASGFLPEEWDKFFVKYLYPSFTPTVF 180

Query: 181 LFVAGTVAYGVLKYLQNEKIKDEK 199
           LFVAGTVAYGV KYLQN+K+KDEK
Sbjct: 181 LFVAGTVAYGVSKYLQNDKLKDEK 202

[Close]

BLAST of Cla97C05G089260 vs. TrEMBL
Match: tr|A0A251J9G9|A0A251J9G9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G034000 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 122/207 (58.94%), Postives = 149/207 (71.98%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYH--LPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLAT 60
           MALQI  H PS   +K YH  L  P L   S+PKF I+SQ ++ +        + ++ + 
Sbjct: 1   MALQI--HLPSPLAKKSYHHLLQAPLLLCRSRPKFTIQSQKTTSN-------TESTNESP 60

Query: 61  SSKPSTSSPQGFGSSS---PQSTTTNKSSPKAV----KQKGKRQRASIIRRSPVEKPVFV 120
             K STS   GFG+ S   P  +++ K+ P  V    KQ+ KR+RASIIRR+PVEKP FV
Sbjct: 61  VPKKSTSPGLGFGTPSSVAPTKSSSTKAGPSTVSTKRKQRDKRERASIIRRTPVEKPAFV 120

Query: 121 GEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTP 180
            + DE  AKEQS+NES FLL WLGLG +ILVEGIVLAASGFLP++WDKFFVKYLYPSFTP
Sbjct: 121 SQEDEAKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPDKWDKFFVKYLYPSFTP 180

Query: 181 TVSLFVAGTVAYGVLKYLQNEKIKDEK 199
           TV+LFVAGTVAYGVLKYLQNE++KD+K
Sbjct: 181 TVALFVAGTVAYGVLKYLQNEELKDQK 198

[Close]

BLAST of Cla97C05G089260 vs. Swiss-Prot
Match: sp|F4KDA6|LPA2_ARATH (Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-34
Identity = 96/198 (48.48%), Postives = 115/198 (58.08%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI  HSP SF+ +PYHL          P+F IK QNS       S   +D S     
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIE----SDTTEDPSRXXXX 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
                                           KR+   + RR+PVEKPVF+ E     A+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRE---VNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 199
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

[Close]

BLAST of Cla97C05G089260 vs. TAIR10
Match: AT5G51545.1 (low psii accumulation2)

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-35
Identity = 96/198 (48.48%), Postives = 115/198 (58.08%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI  HSP SF+ +PYHL          P+F IK QNS       S   +D S     
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIE----SDTTEDPSRXXXX 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
                                           KR+   + RR+PVEKPVF+ E     A+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRE---VNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 199
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

The following BLAST results are available for this feature:

BLAST of Cla97C05G089260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439106.1	1.1e-89	89.45	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]	[more]
XP_004148133.1	1.2e-88	86.93	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN...	[more]
XP_022973018.1	1.6e-72	76.85	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]	[more]
XP_023554492.1	1.6e-72	77.34	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022941727.1	2.8e-72	77.34	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata]	[more]

BLAST of Cla97C05G089260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXX6\|A0A1S3AXX6_CUCME	7.4e-90	89.45	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0L8E3\|A0A0A0L8E3_CUCSA	8.2e-89	86.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1	[more]
tr\|A0A2P5EVB7\|A0A2P5EVB7_9ROSA	8.8e-51	62.31	Protein LOW PSII ACCUMULATION OS=Trema orientalis OX=63057 GN=TorRG33x02_148060 ...	[more]
tr\|A0A2I4H743\|A0A2I4H743_9ROSI	8.8e-51	61.76	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC1...	[more]
tr\|A0A251J9G9\|A0A251J9G9_MANES	1.3e-49	58.94	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G034000 PE=4 SV=...	[more]

BLAST of Cla97C05G089260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4KDA6\|LPA2_ARATH	4.5e-34	48.48	Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cla97C05G089260 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51545.1	2.5e-35	48.48	low psii accumulation2	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038789	LPA2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010467	gene expression
biological_process	GO:0009657	plastid organization
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G089260.1	Cla97C05G089260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..86
IPR038789	Protein LOW PSII ACCUMULATION 2 like	PANTHER	PTHR37385	FAMILY NOT NAMED	coord: 7..196

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G089260	Cla006258	Watermelon (97103) v1	wmwmbB206
Cla97C05G089260	Csa3G176310	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G089260	MELO3C006826	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G089260	ClCG05G007450	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G089260	CSPI03G16070	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G089260	Cucsa.251500	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G089260	CmaCh04G003260	Cucurbita maxima (Rimu)	cmawmbB767
Cla97C05G089260	CmoCh04G003420	Cucurbita moschata (Rifu)	cmowmbB739
Cla97C05G089260	CsGy3G016170	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G089260	MELO3C006826.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G089260	Carg08004	Silver-seed gourd	carwmbB0398
Cla97C05G089260	CsaV3_3G016270	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G089260	Bhi01G000910	Wax gourd	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G089260	Watermelon (97103) v2	wmbwmbB023
Cla97C05G089260	Silver-seed gourd	carwmbB0743
Cla97C05G089260	Silver-seed gourd	carwmbB0910
Cla97C05G089260	Silver-seed gourd	carwmbB0969
Cla97C05G089260	Cucumber (Gy14) v2	cgybwmbB367
Cla97C05G089260	Cucumber (Gy14) v1	cgywmbB522
Cla97C05G089260	Cucurbita maxima (Rimu)	cmawmbB304
Cla97C05G089260	Cucurbita maxima (Rimu)	cmawmbB346
Cla97C05G089260	Cucurbita maxima (Rimu)	cmawmbB649
Cla97C05G089260	Cucurbita maxima (Rimu)	cmawmbB651
Cla97C05G089260	Cucurbita moschata (Rifu)	cmowmbB286
Cla97C05G089260	Cucurbita moschata (Rifu)	cmowmbB331
Cla97C05G089260	Cucurbita moschata (Rifu)	cmowmbB621
Cla97C05G089260	Cucurbita moschata (Rifu)	cmowmbB624
Cla97C05G089260	Wild cucumber (PI 183967)	cpiwmbB404
Cla97C05G089260	Cucumber (Chinese Long) v3	cucwmbB400
Cla97C05G089260	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G089260	Melon (DHL92) v3.6.1	medwmbB021
Cla97C05G089260	Melon (DHL92) v3.5.1	mewmbB024
Cla97C05G089260	Watermelon (Charleston Gray)	wcgwmbB109
Cla97C05G089260	Watermelon (97103) v1	wmwmbB269