CmaCh04G003260 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G003260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Low psii accumulation protein, putative
Location	Cma_Chr04 : 1605102 .. 1606873 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAAAACACCTCTCTATTTCCCCTCTAAGCCAAAATTCATCATCAAATCGCAGAGCCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTGCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTCGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTACGAATTCTCTTCCATAATTATATAAATTGGAACTTGAACTTCGGAATTGTACTGTTTCCATTTGCGATGGTGGAATTTTCTTTTTCTTGTTGGGGTTTCCAGTAATTGTGTTGTTGATCTGAAACATGTTAGTAGTTAAAATCAGATCCGAAGAGGATTTTTCTTTAAGAAGTGGATTAGGCGAACTGTGATGATGGGTTGAATTTTTTTCAGTTTCTGTTGAAAAAGATTGAAATTATGAAATGAATGATATTATGATCTATGCCTCCTCCATGGCGGTTCTTCAATCACCATTATCAGTCTCATTGTGCATATTTGGAGTGTTAATATAAGGCAACATTTCATAACAATTCATGACTAAGCTAATGTTATGCATTGGATTTAGGGTTTTCCAATCAAAATAAGATGCTAATATCATCCTGGCATTAACTTCCATTTGAAATCTGTAACCTAATGTAGCTGGATTAGATTGGGCAATGTCCATTATATTTATCTCAGAAGTTCTGTTGTTCAGAGTCTGTTATTTAACTCTCATGTTAAAGCTATGGGTTTTACCAAAACCATTATTTTGGAACTTTCTTGATTAAAATCCGTTGTTTAGAGTTCAATGGTTTGATGCTTCAGGCGTATATTTATTGTAAAACGTACTTCATTTCTGGTTAATTATGCCATCAAACTAATACAAAGTGATAGCTCTCTTATGTTTCTAGCACCTTTCATAGTTTCACGTGGACAATATGTTGTGAACTTTTGCTAGTTTTATACCATTGAATTCTTTAATGGTTCTAAATATGGGAAATATATTCTTTGCTTTTCAGCCTATTTTCAGTTAGAAAATTTGATGTCTAATTGATTTGATGAATACAATATCCACAGTTAGGTATTTTCATTTCACTTTTACCACCACAATTAATTGGTTGATGTGCACTTTTGCAGGTTTCTTACCAGAGAATTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCACTTTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATTTGGTATGGTGACCTGAAAAGTCTCAAGTGTCTATTGATTATGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTGTTTTAGCTCAAAGGTAAATGAGATGCTATTGTTGGATCCTAAGAAACACCGTGCCATCAATTTATTAGTTTCTCTGGGCTTTAACTAATCGTGTTCTATGCTCGAAGATCCTTCTGTTTCTC

mRNA sequence

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAAAACACCTCTCTATTTCCCCTCTAAGCCAAAATTCATCATCAAATCGCAGAGCCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTGCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTCGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCAGAGAATTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCACTTTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATTTGGTATGGTGACCTGAAAAGTCTCAAGTGTCTATTGATTATGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTGTTTTAGCTCAAAGGTAAATGAGATGCTATTGTTGGATCCTAAGAAACACCGTGCCATCAATTTATTAGTTTCTCTGGGCTTTAACTAATCGTGTTCTATGCTCGAAGATCCTTCTGTTTCTC

Coding sequence (CDS)

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAAAACACCTCTCTATTTCCCCTCTAAGCCAAAATTCATCATCAAATCGCAGAGCCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTGCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTTCAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTCGGAGAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGCATCTGGTTTCTTACCAGAGAATTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCACTTTTTGTGGCTGGAACTGTTGCATACGGAGTTTCGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAA

Protein sequence

MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

Homology

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BLAST of CmaCh04G003260 vs. Swiss-Prot
Match: LPA2_ARATH (Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-42
Identity = 106/196 (54.08%), Postives = 134/196 (68.37%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI  HSP SF+ +PYHL     +    P+F IK Q+ S+ E   ++    +   +SS
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIESDTTEDPSRSKNSSSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
             GFGS +S S+ + K S  AT+   K KGKR+   + RR+PVEKPVF+ E      +EQ
Sbjct: 61  GVGFGSPASSSSPAKKLSA-ATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
            +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE  DK FVKY+YP FTP+V LFVAGT A
Sbjct: 121 RQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTA 180

Query: 181 YGVSKYLQNEKLKGDK 197
           YGV KY+QNEK+KG +
Sbjct: 181 YGVLKYIQNEKMKGQE 185

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BLAST of CmaCh04G003260 vs. TrEMBL
Match: A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.7e-80
Identity = 159/197 (80.71%), Postives = 176/197 (89.34%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI+HHSPSSFT++PYHLP   L+F SKPKFIIKSQ+PSES+KPISK VDDA + TSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
            QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVLKYLQNEKIKDEKS 193

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BLAST of CmaCh04G003260 vs. TrEMBL
Match: A0A067JS76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-51
Identity = 129/199 (64.82%), Postives = 146/199 (73.37%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPY-HLPKTP-LYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGT 60
           MALQI  +SPS  T+K Y HL   P L   +KPK  I+SQ+P+   +    T D A +  
Sbjct: 1   MALQI--YSPSCLTKKSYQHLLYAPVLLSKTKPKLRIQSQNPTTDTE---NTKDSATLKK 60

Query: 61  SSAQGFGSLSSQSTTSSKSSPKAT----TSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
           S+A+G G  SS    S+K+  KA+    TSK KQKGKR+RASIIRR+PVEKP FV +VDE
Sbjct: 61  STARGLGFGSSSPAASTKNPNKASASDVTSKKKQKGKRERASIIRRTPVEKPSFVSQVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180
              KEQ KNES FLL WLGLG +ILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTV LF
Sbjct: 121 TKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLF 180

Query: 181 VAGTVAYGVSKYLQNEKLK 194
           VAGTVAYGV KYLQNEKLK
Sbjct: 181 VAGTVAYGVLKYLQNEKLK 194

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BLAST of CmaCh04G003260 vs. TrEMBL
Match: W9S5C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 8.9e-50
Identity = 122/205 (59.51%), Postives = 140/205 (68.29%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVG--- 60
           MAL I  + P SFT KPY LP TP++      F +KSQ+ SE  K      D  A     
Sbjct: 1   MALHI--NCPPSFTAKPYRLPHTPVFH-----FTVKSQTSSEPPKSTVNPTDSVAPARPN 60

Query: 61  ---TSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV-- 120
              +SS  G G  SS S+ S   + ++ +SK K+KGKR+RASIIRRSPVEKP F      
Sbjct: 61  DKPSSSTTGLGFGSSASSPSPSPANESASSKKKRKGKRERASIIRRSPVEKPSFASAPTA 120

Query: 121 -DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTV 180
            D+E +KE+G+NES FLL WLGLG +ILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTV
Sbjct: 121 EDDEKVKERGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTV 180

Query: 181 SLFVAGTVAYGVSKYLQNEKLKGDK 197
            LFVAGTV YGV KYLQNEKLK  K
Sbjct: 181 VLFVAGTVTYGVLKYLQNEKLKDQK 198

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BLAST of CmaCh04G003260 vs. TrEMBL
Match: A0A061G053_THECC (Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.6e-49
Identity = 125/195 (64.10%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI  H+PSSFT   YH       FP KP F IKSQ P++  +P  +         + 
Sbjct: 1   MALQI--HTPSSFTNGLYH---RNFIFP-KPIFSIKSQKPTDDAEPSPEPSSTPKKPAAP 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGK--QKGKRQRASIIRRSPVEKPVFVGEVDEEAIK 120
            QGFGS SS S++SS  S K++ S GK  QKGKR RASIIRRSPVEKP FV + +E   +
Sbjct: 61  GQGFGS-SSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPAFVSKEEEAKAE 120

Query: 121 EQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ KNES FLL WLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTV LF+AGT
Sbjct: 121 EQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVLLFLAGT 180

Query: 181 VAYGVSKYLQNEKLK 194
           VAYGV KYLQNE LK
Sbjct: 181 VAYGVLKYLQNENLK 188

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BLAST of CmaCh04G003260 vs. TrEMBL
Match: D7T252_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01420 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.2e-47
Identity = 112/183 (61.20%), Postives = 133/183 (72.68%), Query Frame = 1


Query: 15  RKPYHLPKTPLYF-PSKPKFIIKSQSPSESEKPISKTVDDAAVGTSSAQGFGSLSSQSTT 74
           +KP+ L  TP+   P+KP+  IK Q  SE +KP +     +A  TS  QGFGS SS    
Sbjct: 6   QKPHALLHTPILITPTKPRLRIKCQDSSEPQKPST-----SAQPTSPGQGFGSASS---- 65

Query: 75  SSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLG 134
               + K   +K K+KG+R+RASIIRRSPV+KP F+G  ++   KEQG+NES FLL WLG
Sbjct: 66  ----TVKTAVNKKKEKGRRERASIIRRSPVQKPEFLGVEEQGESKEQGRNESAFLLAWLG 125

Query: 135 LGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLK 194
           LG +ILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTV LFVAGTVAYGV KYLQNE++K
Sbjct: 126 LGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLFVAGTVAYGVLKYLQNEEIK 175

Query: 195 GDK 197
             K
Sbjct: 186 TPK 175

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BLAST of CmaCh04G003260 vs. TAIR10
Match: AT5G51545.1 (AT5G51545.1 low psii accumulation2)

HSP 1 Score: 174.5 bits (441), Expect = 6.5e-44
Identity = 106/196 (54.08%), Postives = 134/196 (68.37%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI  HSP SF+ +PYHL     +    P+F IK Q+ S+ E   ++    +   +SS
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQN-SQIESDTTEDPSRSKNSSSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
             GFGS +S S+ + K S  AT+   K KGKR+   + RR+PVEKPVF+ E      +EQ
Sbjct: 61  GVGFGSPASSSSPAKKLSA-ATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
            +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE  DK FVKY+YP FTP+V LFVAGT A
Sbjct: 121 RQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTA 180

Query: 181 YGVSKYLQNEKLKGDK 197
           YGV KY+QNEK+KG +
Sbjct: 181 YGVLKYIQNEKMKGQE 185

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: gi|449460802|ref|XP_004148133.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 2.4e-80
Identity = 159/197 (80.71%), Postives = 176/197 (89.34%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI+HHSPSSFT++PYHLP   L+F SKPKFIIKSQ+PSES+KPISK VDDA + TSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
            QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120

Query: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVSKYLQNEKLKGDKS 198
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVLKYLQNEKIKDEKS 193

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: gi|659077251|ref|XP_008439106.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 5.0e-78
Identity = 160/203 (78.82%), Postives = 174/203 (85.71%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI+HHSPSSFT+KPYHLP   L+F SKPKFIIKSQ+PSESEKPISK VDDA + TSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  A------QGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
                  QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180
           +  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE WD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKLKGDKS 198
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: gi|802769639|ref|XP_012090413.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas])

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-51
Identity = 129/199 (64.82%), Postives = 146/199 (73.37%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPY-HLPKTP-LYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGT 60
           MALQI  +SPS  T+K Y HL   P L   +KPK  I+SQ+P+   +    T D A +  
Sbjct: 1   MALQI--YSPSCLTKKSYQHLLYAPVLLSKTKPKLRIQSQNPTTDTE---NTKDSATLKK 60

Query: 61  SSAQGFGSLSSQSTTSSKSSPKAT----TSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120
           S+A+G G  SS    S+K+  KA+    TSK KQKGKR+RASIIRR+PVEKP FV +VDE
Sbjct: 61  STARGLGFGSSSPAASTKNPNKASASDVTSKKKQKGKRERASIIRRTPVEKPSFVSQVDE 120

Query: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180
              KEQ KNES FLL WLGLG +ILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTV LF
Sbjct: 121 TKAKEQSKNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLF 180

Query: 181 VAGTVAYGVSKYLQNEKLK 194
           VAGTVAYGV KYLQNEKLK
Sbjct: 181 VAGTVAYGVLKYLQNEKLK 194

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: gi|703118995|ref|XP_010101744.1| (hypothetical protein L484_004366 [Morus notabilis])

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-49
Identity = 122/205 (59.51%), Postives = 140/205 (68.29%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVG--- 60
           MAL I  + P SFT KPY LP TP++      F +KSQ+ SE  K      D  A     
Sbjct: 1   MALHI--NCPPSFTAKPYRLPHTPVFH-----FTVKSQTSSEPPKSTVNPTDSVAPARPN 60

Query: 61  ---TSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV-- 120
              +SS  G G  SS S+ S   + ++ +SK K+KGKR+RASIIRRSPVEKP F      
Sbjct: 61  DKPSSSTTGLGFGSSASSPSPSPANESASSKKKRKGKRERASIIRRSPVEKPSFASAPTA 120

Query: 121 -DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTV 180
            D+E +KE+G+NES FLL WLGLG +ILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTV
Sbjct: 121 EDDEKVKERGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTV 180

Query: 181 SLFVAGTVAYGVSKYLQNEKLKGDK 197
            LFVAGTV YGV KYLQNEKLK  K
Sbjct: 181 VLFVAGTVTYGVLKYLQNEKLKDQK 198

[Close]

BLAST of CmaCh04G003260 vs. NCBI nr
Match: gi|590671793|ref|XP_007038430.1| (Low psii accumulation2, putative [Theobroma cacao])

HSP 1 Score: 203.4 bits (516), Expect = 3.7e-49
Identity = 125/195 (64.10%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
           MALQI  H+PSSFT   YH       FP KP F IKSQ P++  +P  +         + 
Sbjct: 1   MALQI--HTPSSFTNGLYH---RNFIFP-KPIFSIKSQKPTDDAEPSPEPSSTPKKPAAP 60

Query: 61  AQGFGSLSSQSTTSSKSSPKATTSKGK--QKGKRQRASIIRRSPVEKPVFVGEVDEEAIK 120
            QGFGS SS S++SS  S K++ S GK  QKGKR RASIIRRSPVEKP FV + +E   +
Sbjct: 61  GQGFGS-SSPSSSSSLPSGKSSISSGKKKQKGKRVRASIIRRSPVEKPAFVSKEEEAKAE 120

Query: 121 EQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ KNES FLL WLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTV LF+AGT
Sbjct: 121 EQRKNESAFLLAWLGLGGVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVLLFLAGT 180

Query: 181 VAYGVSKYLQNEKLK 194
           VAYGV KYLQNE LK
Sbjct: 181 VAYGVLKYLQNENLK 188

The following BLAST results are available for this feature:

BLAST of CmaCh04G003260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LPA2_ARATH	1.2e-42	54.08	Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 P...	[more]

BLAST of CmaCh04G003260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8E3_CUCSA	1.7e-80	80.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1	[more]
A0A067JS76_JATCU	1.2e-51	64.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1	[more]
W9S5C4_9ROSA	8.9e-50	59.51	Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1	[more]
A0A061G053_THECC	2.6e-49	64.10	Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1	[more]
D7T252_VITVI	4.2e-47	61.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01420 PE=4 SV=...	[more]

BLAST of CmaCh04G003260 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51545.1	6.5e-44	54.08	low psii accumulation2	[more]

BLAST of CmaCh04G003260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460802\|ref\|XP_004148133.1\|	2.4e-80	80.71	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]	[more]
gi\|659077251\|ref\|XP_008439106.1\|	5.0e-78	78.82	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]	[more]
gi\|802769639\|ref\|XP_012090413.1\|	1.8e-51	64.82	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]	[more]
gi\|703118995\|ref\|XP_010101744.1\|	1.3e-49	59.51	hypothetical protein L484_004366 [Morus notabilis]	[more]
gi\|590671793\|ref\|XP_007038430.1\|	3.7e-49	64.10	Low psii accumulation2, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010467	gene expression
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009657	plastid organization
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003260.1	CmaCh04G003260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37385	FAMILY NOT NAMED	coord: 43..196 score: 1.2
None	No IPR available	PANTHER	PTHR37385:SF1	SUBFAMILY NOT NAMED	coord: 43..196 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G003260	Cucsa.251500	Cucumber (Gy14) v1	cgycmaB0722
CmaCh04G003260	Cla006258	Watermelon (97103) v1	cmawmB707
CmaCh04G003260	Csa3G176310	Cucumber (Chinese Long) v2	cmacuB703
CmaCh04G003260	MELO3C006826	Melon (DHL92) v3.5.1	cmameB692
CmaCh04G003260	ClCG05G007450	Watermelon (Charleston Gray)	cmawcgB663
CmaCh04G003260	CSPI03G16070	Wild cucumber (PI 183967)	cmacpiB712
CmaCh04G003260	CmoCh04G003420	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G003260	Lsi05G013140	Bottle gourd (USVL1VR-Ls)	cmalsiB688
CmaCh04G003260	Cp4.1LG01g03710	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G003260	MELO3C006826.2	Melon (DHL92) v3.6.1	cmamedB779
CmaCh04G003260	CsaV3_3G016270	Cucumber (Chinese Long) v3	cmacucB0838
CmaCh04G003260	Cla97C05G089260	Watermelon (97103) v2	cmawmbB767
CmaCh04G003260	Bhi01G000910	Wax gourd	cmawgoB0856
CmaCh04G003260	CsGy3G016170	Cucumber (Gy14) v2	cgybcmaB417
CmaCh04G003260	Carg08004	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G003260	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G003260	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G003260	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G003260	Silver-seed gourd	carcmaB1209