WMU37093 (transcribed_cluster) Watermelon (97103) v1

NameWMU37093
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLow psii accumulation protein, putative
LocationChr5 : 7505512 .. 7508103 (+)
Sequence length874
The following sequences are available for this feature:

transcribed_cluster sequence

ACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAAACTCATCGGAATCCGAAAAGCCCACTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCACCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTATGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAATTTTAATCCTTTTTTGCTTGATGTTCTGTATTTGATGTGAAGACCTGAAAAATCTCAAGTGCCTATAGATCTTGTTTATACAAAGTATCTCGTTTTACTGAGAAACTGAGGATGCAATTTTCTTTAGCTCAAAAGCAAATGAGATGCTGTTGGTGGATTCTACGGAAACACCTTGCCATCGTTTTATTAGTTTCTTTTGGGATTTAGTTTCGATGACGATGATCTTCTGAAAGATCCCTTCTGTTAATATCTTAGGATTGAGAATAACCTATTGTATAGATCCCTTATGTAA
BLAST of WMU37093 vs. TAIR10
Match: AT5G51545.1 (AT5G51545.1 low psii accumulation2)

HSP 1 Score: 149.4 bits (376), Expect = 3.3e-36
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 1

Query: 247 KQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAMILVEGIVLA 306
           K KGKR+   + RR+PVEKPVF+ E     A+EQ +NE+ FLLTWLGLG +IL+EGI+LA
Sbjct: 79  KGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILA 138

Query: 307 ASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK 366
           ASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Sbjct: 139 ASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNEKMKGQE 185

Query: 367 426
           
Sbjct: 199 185

Query: 427 486
           
Sbjct: 259 185

Query: 487 546
           
Sbjct: 319 185

Query: 547 577
           
Sbjct: 379 185

BLAST of WMU37093 vs. Swiss-Prot
Match: LPA2_ARATH (Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.9e-35
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 1

Query: 247 KQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAMILVEGIVLA 306
           K KGKR+   + RR+PVEKPVF+ E     A+EQ +NE+ FLLTWLGLG +IL+EGI+LA
Sbjct: 79  KGKGKRE---VNRRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILA 138

Query: 307 ASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK 366
           ASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Sbjct: 139 ASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNEKMKGQE 185

Query: 367 426
           
Sbjct: 199 185

Query: 427 486
           
Sbjct: 259 185

Query: 487 546
           
Sbjct: 319 185

Query: 547 577
           
Sbjct: 379 185

BLAST of WMU37093 vs. TrEMBL
Match: A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.0e-55
Identity = 115/155 (74.19%), Postives = 124/155 (80.00%), Query Frame = 1

Query: 115 KPTSKIVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXNKSSPKAVKQKGKRQRASIIRRSP 174
           KP SK+VDD                           +KS+PK++KQKGKRQRASIIRRSP
Sbjct: 45  KPISKVVDDAPIATSSPQGFGSSSPQSTST------SKSTPKSLKQKGKRQRASIIRRSP 104

Query: 175 VEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAMILVEGIVLAASGFLPEEWDKFFVKY 234
           VEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG +ILV+GIVLAASGFLPEEWDKFFVKY
Sbjct: 105 VEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKY 164

Query: 235 LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS 294
           LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Sbjct: 165 LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS 193

Query: 295 354
           
Sbjct: 225 193

Query: 355 414
           
Sbjct: 285 193

Query: 415 474
           
Sbjct: 345 193

Query: 475 534
           
Sbjct: 405 193

Query: 535 580
           
Sbjct: 465 193

BLAST of WMU37093 vs. TrEMBL
Match: A0A0A0L8E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 3

Query: 3  HSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQ 62
          HSPSSFT++PYHLPNPSLHF SKPKFIIKSQ
Sbjct: 8  HSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQ 38

Query: 63 96
          
Sbjct: 68 38


HSP 2 Score: 193.0 bits (489), Expect = 5.2e-46
Identity = 98/121 (80.99%), Postives = 106/121 (87.60%), Query Frame = 1

Query: 223 NKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGL 282
           NK+S   V    KQKGKR+RASIIRR+PVEKP FV +VDE  AKEQS+NES FLL WLGL
Sbjct: 76  NKASASDVTSKKKQKGKRERASIIRRTPVEKPSFVSQVDETKAKEQSKNESAFLLAWLGL 135

Query: 283 GAMILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD 342
           G +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTV LFVAGTVAYGVLKYLQNEK+KD
Sbjct: 136 GGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLFVAGTVAYGVLKYLQNEKLKD 195

Query: 343 E 402
           +
Sbjct: 196 Q 196

Query: 403 462
           
Sbjct: 256 196

Query: 463 522
           
Sbjct: 316 196

Query: 523 574
           
Sbjct: 376 196

BLAST of WMU37093 vs. TrEMBL
Match: W9S5C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.0e-43
Identity = 92/121 (76.03%), Postives = 101/121 (83.47%), Query Frame = 1

Query: 223 NKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEV---DEEAAKEQSRNESYFLLTWLGLG 282
           N+S+    K+KGKR+RASIIRRSPVEKP F       D+E  KE+ RNES FLL WLGLG
Sbjct: 78  NESASSKKKRKGKRERASIIRRSPVEKPSFASAPTAEDDEKVKERGRNESAFLLAWLGLG 137

Query: 283 AMILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDE 342
            +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTV LFVAGTV YGVLKYLQNEK+KD+
Sbjct: 138 GIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVVLFVAGTVTYGVLKYLQNEKLKDQ 197

Query: 343 K 402
           K
Sbjct: 198 K 198

Query: 403 462
           
Sbjct: 258 198

Query: 463 522
           
Sbjct: 318 198

Query: 523 577
           
Sbjct: 378 198

BLAST of WMU37093 vs. TrEMBL
Match: B9R9P9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1499930 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.7e-42
Identity = 87/111 (78.38%), Postives = 99/111 (89.19%), Query Frame = 1

Query: 247 KQKGKRQRASIIRRSPVEKPVFVG-EVDEEAAKEQSRNESYFLLTWLGLGAMILVEGIVL 306
           K KGKR+RASIIRRSPVE+P FV  E+DE  AKEQ RNES FLL WLGLG +ILV+GI+L
Sbjct: 79  KHKGKRERASIIRRSPVERPAFVSQEIDEAKAKEQGRNESAFLLAWLGLGGIILVQGIIL 138

Query: 307 AASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK 366
           +ASGFLP+EWDK+FVKYLYPSFTPTV LFVAGTV YGVLKYLQNE++KD+K
Sbjct: 139 SASGFLPDEWDKYFVKYLYPSFTPTVFLFVAGTVTYGVLKYLQNEELKDQK 189

Query: 367 426
           
Sbjct: 199 189

Query: 427 486
           
Sbjct: 259 189

Query: 487 546
           
Sbjct: 319 189

Query: 547 577
           
Sbjct: 379 189

BLAST of WMU37093 vs. TrEMBL
Match: A0A061G053_THECC (Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.7e-42
Identity = 88/109 (80.73%), Postives = 97/109 (88.99%), Query Frame = 1

Query: 247 KQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAMILVEGIVLA 306
           KQKGKR RASIIRRSPVEKP FV + +E  A+EQ +NES FLL WLGLG +ILV+GIVLA
Sbjct: 82  KQKGKRVRASIIRRSPVEKPAFVSKEEEAKAEEQRKNESAFLLAWLGLGGVILVQGIVLA 141

Query: 307 ASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDE 366
           ASGFLPEEWDKFFVKYLYPSFTPTV LF+AGTVAYGVLKYLQNE +KD+
Sbjct: 142 ASGFLPEEWDKFFVKYLYPSFTPTVLLFLAGTVAYGVLKYLQNENLKDQ 190

Query: 367 426
           
Sbjct: 202 190

Query: 427 486
           
Sbjct: 262 190

Query: 487 546
           
Sbjct: 322 190

Query: 547 574
           
Sbjct: 382 190

BLAST of WMU37093 vs. NCBI nr
Match: gi|659077251|ref|XP_008439106.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 118/155 (76.13%), Postives = 124/155 (80.00%), Query Frame = 1

Query: 115 KPTSKIVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXNKSSPKAVKQKGKRQRASIIRRSP 174
           KP SKIVDD                           +KS+PK+VKQKGKRQRASIIRRSP
Sbjct: 45  KPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSP 104

Query: 175 VEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAMILVEGIVLAASGFLPEEWDKFFVKY 234
           VEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG +ILVEGIVLAASGFLPEEWD+ FVKY
Sbjct: 105 VEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKY 164

Query: 235 LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS 294
           LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Sbjct: 165 LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS 199

Query: 295 354
           
Sbjct: 225 199

Query: 355 414
           
Sbjct: 285 199

Query: 415 474
           
Sbjct: 345 199

Query: 475 534
           
Sbjct: 405 199

Query: 535 580
           
Sbjct: 465 199

BLAST of WMU37093 vs. NCBI nr
Match: gi|449460802|ref|XP_004148133.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 8.8e-55
Identity = 115/155 (74.19%), Postives = 124/155 (80.00%), Query Frame = 1

Query: 115 KPTSKIVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXNKSSPKAVKQKGKRQRASIIRRSP 174
           KP SK+VDD                           +KS+PK++KQKGKRQRASIIRRSP
Sbjct: 45  KPISKVVDDAPIATSSPQGFGSSSPQSTST------SKSTPKSLKQKGKRQRASIIRRSP 104

Query: 175 VEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAMILVEGIVLAASGFLPEEWDKFFVKY 234
           VEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG +ILV+GIVLAASGFLPEEWDKFFVKY
Sbjct: 105 VEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKY 164

Query: 235 LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS 294
           LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Sbjct: 165 LYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS 193

Query: 295 354
           
Sbjct: 225 193

Query: 355 414
           
Sbjct: 285 193

Query: 415 474
           
Sbjct: 345 193

Query: 475 534
           
Sbjct: 405 193

Query: 535 580
           
Sbjct: 465 193

BLAST of WMU37093 vs. NCBI nr
Match: gi|802769639|ref|XP_012090413.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas])

HSP 1 Score: 193.0 bits (489), Expect = 7.4e-46
Identity = 98/121 (80.99%), Postives = 106/121 (87.60%), Query Frame = 1

Query: 223 NKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGL 282
           NK+S   V    KQKGKR+RASIIRR+PVEKP FV +VDE  AKEQS+NES FLL WLGL
Sbjct: 76  NKASASDVTSKKKQKGKRERASIIRRTPVEKPSFVSQVDETKAKEQSKNESAFLLAWLGL 135

Query: 283 GAMILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD 342
           G +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTV LFVAGTVAYGVLKYLQNEK+KD
Sbjct: 136 GGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLFVAGTVAYGVLKYLQNEKLKD 195

Query: 343 E 402
           +
Sbjct: 196 Q 196

Query: 403 462
           
Sbjct: 256 196

Query: 463 522
           
Sbjct: 316 196

Query: 523 574
           
Sbjct: 376 196

BLAST of WMU37093 vs. NCBI nr
Match: gi|703118995|ref|XP_010101744.1| (hypothetical protein L484_004366 [Morus notabilis])

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 92/121 (76.03%), Postives = 101/121 (83.47%), Query Frame = 1

Query: 223 NKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEV---DEEAAKEQSRNESYFLLTWLGLG 282
           N+S+    K+KGKR+RASIIRRSPVEKP F       D+E  KE+ RNES FLL WLGLG
Sbjct: 78  NESASSKKKRKGKRERASIIRRSPVEKPSFASAPTAEDDEKVKERGRNESAFLLAWLGLG 137

Query: 283 AMILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDE 342
            +ILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTV LFVAGTV YGVLKYLQNEK+KD+
Sbjct: 138 GIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVVLFVAGTVTYGVLKYLQNEKLKDQ 197

Query: 343 K 402
           K
Sbjct: 198 K 198

Query: 403 462
           
Sbjct: 258 198

Query: 463 522
           
Sbjct: 318 198

Query: 523 577
           
Sbjct: 378 198

BLAST of WMU37093 vs. NCBI nr
Match: gi|255539719|ref|XP_002510924.1| (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Ricinus communis])

HSP 1 Score: 181.0 bits (458), Expect = 2.9e-42
Identity = 87/111 (78.38%), Postives = 99/111 (89.19%), Query Frame = 1

Query: 247 KQKGKRQRASIIRRSPVEKPVFVG-EVDEEAAKEQSRNESYFLLTWLGLGAMILVEGIVL 306
           K KGKR+RASIIRRSPVE+P FV  E+DE  AKEQ RNES FLL WLGLG +ILV+GI+L
Sbjct: 79  KHKGKRERASIIRRSPVERPAFVSQEIDEAKAKEQGRNESAFLLAWLGLGGIILVQGIIL 138

Query: 307 AASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK 366
           +ASGFLP+EWDK+FVKYLYPSFTPTV LFVAGTV YGVLKYLQNE++KD+K
Sbjct: 139 SASGFLPDEWDKYFVKYLYPSFTPTVFLFVAGTVTYGVLKYLQNEELKDQK 189

Query: 367 426
           
Sbjct: 199 189

Query: 427 486
           
Sbjct: 259 189

Query: 487 546
           
Sbjct: 319 189

Query: 547 577
           
Sbjct: 379 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G51545.13.3e-3667.27 low psii accumulation2[more]
Match NameE-valueIdentityDescription
LPA2_ARATH5.9e-3567.27Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 P... [more]
Match NameE-valueIdentityDescription
A0A0A0L8E3_CUCSA8.0e-5574.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1[more]
A0A0A0L8E3_CUCSA1.2e-0790.32Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176310 PE=4 SV=1[more]
W9S5C4_9ROSA7.0e-4376.03Uncharacterized protein OS=Morus notabilis GN=L484_004366 PE=4 SV=1[more]
B9R9P9_RICCO2.7e-4278.38Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1499930 PE=4 SV=1[more]
A0A061G053_THECC2.7e-4280.73Low psii accumulation2, putative OS=Theobroma cacao GN=TCM_014960 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659077251|ref|XP_008439106.1|1.2e-5676.13PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo][more]
gi|449460802|ref|XP_004148133.1|8.8e-5574.19PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus][more]
gi|802769639|ref|XP_012090413.1|7.4e-4680.99PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas][more]
gi|703118995|ref|XP_010101744.1|1.0e-4276.03hypothetical protein L484_004366 [Morus notabilis][more]
gi|255539719|ref|XP_002510924.1|2.9e-4278.38PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Ricinus communis][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla006258Cla006258gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0039353S2_0039353EST
S3_0036958S3_0036958EST
S3_0108197S3_0108197EST
S3_0126418S3_0126418EST
S3_0156477S3_0156477EST
S4_0058811S4_0058811EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37385FAMILY NOT NAMEDcoord: 22..192
score: 9.1
NoneNo IPR availablePANTHERPTHR37385:SF1SUBFAMILY NOT NAMEDcoord: 22..192
score: 9.1