Cla001912 (gene) Watermelon (97103) v1

NameCla001912
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR011992 EF-Hand type
LocationChr11 : 26619877 .. 26620368 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGTATGAAGCAAGTAAGTTTATCGAGGAGTATGAAAAAAATGGTGATGGTGTTCAAGTAAAAGCTTTCAATGACGTTGCTCGAGGTTCAACTCAAATCAATAATCAAGAAATGGTATCGAAAATCCTAAAATCGAACGATGATGATATACTCAAGCTTAGTTCAAATGATCATATAAAGCCAACTAAGCAAATAGGAGGAAAAGCTAAAATATCCACCACAAGGGTTCTTGGCGTAAAGTCGTCTAATATGCAATTTAGTCGAGAGGAGATGAAGGAAATTTTTCAATATCATGACGTCAACAATGATGGTTTCCTCGATAGAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTTTTCCATTCTACAAAGCTTGCTACGGAATGTTGTATGCCGATATTAATAAAGATGGTCTTATCAGTGAGATTGAGCTTGACAAACTCATTGATTATGCAAGTAGATTTATCGAGAAGAAATAA

mRNA sequence

ATGGTTATGTATGAAGCAAGTAAGTTTATCGAGGAGTATGAAAAAAATGGTGATGGTGTTCAAGTAAAAGCTTTCAATGACGTTGCTCGAGGTTCAACTCAAATCAATAATCAAGAAATGGTATCGAAAATCCTAAAATCGAACGATGATGATATACTCAAGCTTAGTTCAAATGATCATATAAAGCCAACTAAGCAAATAGGAGGAAAAGCTAAAATATCCACCACAAGGGTTCTTGGCGTAAAGTCGTCTAATATGCAATTTAGTCGAGAGGAGATGAAGGAAATTTTTCAATATCATGACGTCAACAATGATGGTTTCCTCGATAGAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTTTTCCATTCTACAAAGCTTGCTACGGAATGTTGTATGCCGATATTAATAAAGATGGTCTTATCAGTGAGATTGAGCTTGACAAACTCATTGATTATGCAAGTAGATTTATCGAGAAGAAATAA

Coding sequence (CDS)

ATGGTTATGTATGAAGCAAGTAAGTTTATCGAGGAGTATGAAAAAAATGGTGATGGTGTTCAAGTAAAAGCTTTCAATGACGTTGCTCGAGGTTCAACTCAAATCAATAATCAAGAAATGGTATCGAAAATCCTAAAATCGAACGATGATGATATACTCAAGCTTAGTTCAAATGATCATATAAAGCCAACTAAGCAAATAGGAGGAAAAGCTAAAATATCCACCACAAGGGTTCTTGGCGTAAAGTCGTCTAATATGCAATTTAGTCGAGAGGAGATGAAGGAAATTTTTCAATATCATGACGTCAACAATGATGGTTTCCTCGATAGAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTTTTCCATTCTACAAAGCTTGCTACGGAATGTTGTATGCCGATATTAATAAAGATGGTCTTATCAGTGAGATTGAGCTTGACAAACTCATTGATTATGCAAGTAGATTTATCGAGAAGAAATAA

Protein sequence

MVMYEASKFIEEYEKNGDGVQVKAFNDVARGSTQINNQEMVSKILKSNDDDILKLSSNDHIKPTKQIGGKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAFLGSIFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK
BLAST of Cla001912 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.3e-56
Identity = 116/163 (71.17%), Postives = 132/163 (80.98%), Query Frame = 1

Query: 1   MVMYEASKFIEEYEKNGDGVQVKAFNDVARGSTQINNQEMVSKILKSNDDDILKLSSNDH 60
           M MYEAS  I++YEKNGD V+VKAF+DV R STQI N+E V KILK +D    KL S  H
Sbjct: 10  MAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGVAHKLRSEAH 69

Query: 61  IKPTKQIGGKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAFL 120
           I+PT++ GGK K S TRVL  KSSNM  SRE +KEIFQYHD NNDGFL+R ELTKAFAFL
Sbjct: 70  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 129

Query: 121 GSIFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
           GS+FPFYKACYGM+YAD N+DGLISE ELDKLIDYAS+ I+KK
Sbjct: 130 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of Cla001912 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.7e-49
Identity = 104/161 (64.60%), Postives = 129/161 (80.12%), Query Frame = 1

Query: 4   YEASKFIEEYEKNGDGVQVKAFNDVARGSTQIN-NQEMVSKILKSNDDDILKLSSNDHIK 63
           YEASK +++YE+NG+GV + AFND ARGSTQIN N+EM +K LK NDD   KLSSN  +K
Sbjct: 40  YEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQLK 99

Query: 64  PTKQIGGKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAFLGS 123
              QI GKA++   RV   K+SNMQFSRE++KEIFQY+D + DGFL+ RE+TKAFA LGS
Sbjct: 100 SNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALLGS 159

Query: 124 IFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
           IFPF KA +GM+YAD NKDGLI E ELDKLI+YA++F++KK
Sbjct: 160 IFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of Cla001912 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.1e-44
Identity = 93/164 (56.71%), Postives = 131/164 (79.88%), Query Frame = 1

Query: 4   YEASKFIEEYEKNGDGVQVKAFNDVARGSTQINNQEMVSK--ILKSNDDDILK-LSSNDH 63
           YEASK ++++E N +GV +KAFN +   ST+INN++ ++   ILK ++  +   L+SN +
Sbjct: 13  YEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSNAY 72

Query: 64  IKPTKQIG-GKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAF 123
           + P+KQ+G GKA+++TT VL +K+SNMQFSRE++KEIFQYHD +NDGFL+ RE+TKAFAF
Sbjct: 73  MIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAF 132

Query: 124 LGSIFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
           LG+I P YKA +GM+YAD NKDGLIS+ EL+KL+DYA +F  K+
Sbjct: 133 LGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of Cla001912 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-35
Identity = 87/165 (52.73%), Postives = 118/165 (71.52%), Query Frame = 1

Query: 5   EASKFIEEYEKNGDGV----QVKAFNDVARGSTQINNQEMVSK--ILKSNDDDILKLSSN 64
           EA++ I++Y++NGDGV    ++++F   ARGSTQ+NN   VS   + K+N++   K+SSN
Sbjct: 13  EANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKVSSN 72

Query: 65  DHIKPTKQIGGKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFA 124
             I P KQ+  KA+ S+      K SN+  SRE++KEIF+YHD N DGFL  RELTKAF+
Sbjct: 73  TCITPKKQLLDKAQGSS------KQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFS 132

Query: 125 FLGSIFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
            +GSI PF KA Y M YAD+++DGL+SE ELDKLIDYA + I+KK
Sbjct: 133 SMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of Cla001912 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 1

Query: 84  SNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAFLGSIFPFYKACYGMLYADINKDGL 143
           S   FSREEMKEIF+ HD++ DG+L   EL KA  FLG   PFYKA YGM Y D N DGL
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 144 ISEIELDKLIDYASRFIEKK 164
           ISE ELDKLIDYA RF +++
Sbjct: 67  ISEDELDKLIDYAERFQKRR 86

BLAST of Cla001912 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 7.6e-56
Identity = 116/163 (71.17%), Postives = 132/163 (80.98%), Query Frame = 1

Query: 1   MVMYEASKFIEEYEKNGDGVQVKAFNDVARGSTQINNQEMVSKILKSNDDDILKLSSNDH 60
           M MYEAS  I++YEKNGD V+VKAF+DV R STQI N+E V KILK +D    KL S  H
Sbjct: 10  MAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGVAHKLRSEAH 69

Query: 61  IKPTKQIGGKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAFL 120
           I+PT++ GGK K S TRVL  KSSNM  SRE +KEIFQYHD NNDGFL+R ELTKAFAFL
Sbjct: 70  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 129

Query: 121 GSIFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
           GS+FPFYKACYGM+YAD N+DGLISE ELDKLIDYAS+ I+KK
Sbjct: 130 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of Cla001912 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 5.3e-49
Identity = 104/161 (64.60%), Postives = 129/161 (80.12%), Query Frame = 1

Query: 4   YEASKFIEEYEKNGDGVQVKAFNDVARGSTQIN-NQEMVSKILKSNDDDILKLSSNDHIK 63
           YEASK +++YE+NG+GV + AFND ARGSTQIN N+EM +K LK NDD   KLSSN  +K
Sbjct: 40  YEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQLK 99

Query: 64  PTKQIGGKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAFLGS 123
              QI GKA++   RV   K+SNMQFSRE++KEIFQY+D + DGFL+ RE+TKAFA LGS
Sbjct: 100 SNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALLGS 159

Query: 124 IFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
           IFPF KA +GM+YAD NKDGLI E ELDKLI+YA++F++KK
Sbjct: 160 IFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of Cla001912 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 8.7e-44
Identity = 93/164 (56.71%), Postives = 131/164 (79.88%), Query Frame = 1

Query: 4   YEASKFIEEYEKNGDGVQVKAFNDVARGSTQINNQEMVSK--ILKSNDDDILK-LSSNDH 63
           YEASK ++++E N +GV +KAFN +   ST+INN++ ++   ILK ++  +   L+SN +
Sbjct: 13  YEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSNAY 72

Query: 64  IKPTKQIG-GKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAF 123
           + P+KQ+G GKA+++TT VL +K+SNMQFSRE++KEIFQYHD +NDGFL+ RE+TKAFAF
Sbjct: 73  MIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAF 132

Query: 124 LGSIFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
           LG+I P YKA +GM+YAD NKDGLIS+ EL+KL+DYA +F  K+
Sbjct: 133 LGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of Cla001912 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 4.3e-35
Identity = 87/165 (52.73%), Postives = 118/165 (71.52%), Query Frame = 1

Query: 5   EASKFIEEYEKNGDGV----QVKAFNDVARGSTQINNQEMVSK--ILKSNDDDILKLSSN 64
           EA++ I++Y++NGDGV    ++++F   ARGSTQ+NN   VS   + K+N++   K+SSN
Sbjct: 13  EANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKVSSN 72

Query: 65  DHIKPTKQIGGKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFA 124
             I P KQ+  KA+ S+      K SN+  SRE++KEIF+YHD N DGFL  RELTKAF+
Sbjct: 73  TCITPKKQLLDKAQGSS------KQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFS 132

Query: 125 FLGSIFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
            +GSI PF KA Y M YAD+++DGL+SE ELDKLIDYA + I+KK
Sbjct: 133 SMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of Cla001912 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31
Identity = 82/161 (50.93%), Postives = 107/161 (66.46%), Query Frame = 1

Query: 5   EASKFIEEYEKNGDGVQVKAFNDVARGSTQINNQEMVSK--ILKSNDDDILKLSSNDHIK 64
           EAS+ I++Y++NGDGV  K          ++ N   VS   I K+N++   K+SSN  IK
Sbjct: 13  EASELIKKYDRNGDGVLTKEELQSFLHDARLKNIRFVSSSTIPKTNENLDQKVSSNTRIK 72

Query: 65  PTKQIGGKAKISTTRVLGVKSSNMQFSREEMKEIFQYHDVNNDGFLDRRELTKAFAFLGS 124
           P KQ+  KA+ S      ++ SN+  SRE++KEIF+YHD N DGFL  RELTKAF  LGS
Sbjct: 73  PKKQLLDKAQDS------LRQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFGSLGS 132

Query: 125 IFPFYKACYGMLYADINKDGLISEIELDKLIDYASRFIEKK 164
           I PF KA + M YAD+++DGLISE EL KLIDYA + I+KK
Sbjct: 133 IVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KMQ1_CUCSA5.3e-5671.17Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0KLF3_CUCSA3.7e-4964.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA6.1e-4456.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA3.0e-3552.73Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA2.3e-1963.75Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700194510|gb|KGN49687.1|7.6e-5671.17hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|700194512|gb|KGN49689.1|5.3e-4964.60hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|8.7e-4456.71hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|4.3e-3552.73PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|2.2e-3150.93PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001912Cla001912.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 92..120
score: 7.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 137..159
score: 5.754coord: 88..123
score: 13
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 6..53
score: 7.0E-10coord: 86..153
score: 7.0
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 84..149
score: 4.18
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 137..149
score: -coord: 101..113
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 83..156
score: 1.2
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 83..156
score: 1.2