CmaCh04G019140 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G019140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCma_Chr04 : 10177971 .. 10178402 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGTATGAAGCAAGTGAGATGATCAAGAAGTATCCTAGAAATGGTGATGATGTTCAACTAAAATCTTTCGGTGGCATTACTCGAGATTCAACTCAAGTCAACAATCAAGGCAAGATATCGGAAATCCTAAAAGATAACAAGAATGTTGGGCTCAAGCTTAGTTCAAATACTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAACAGATGAAGGAGATCTTTAGATATCATGATAGCGACAAGGATGGTTTTCTCAATATAAGAGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGTCATATGCGGATGCAAATAAAGATGGCCTTATCGGCGAGGCTGAACTTGACAAACTCATTGATTATGCCCAGAAATTTGTGAAGAAGAAATGA

mRNA sequence

ATGGCTAAGTATGAAGCAAGTGAGATGATCAAGAAGTATCCTAGAAATGGTGATGATGTTCAACTAAAATCTTTCGGTGGCATTACTCGAGATTCAACTCAAGTCAACAATCAAGGCAAGATATCGGAAATCCTAAAAGATAACAAGAATGTTGGGCTCAAGCTTAGTTCAAATACTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAACAGATGAAGGAGATCTTTAGATATCATGATAGCGACAAGGATGGTTTTCTCAATATAAGAGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGTCATATGCGGATGCAAATAAAGATGGCCTTATCGGCGAGGCTGAACTTGACAAACTCATTGATTATGCCCAGAAATTTGTGAAGAAGAAATGA

Coding sequence (CDS)

ATGGCTAAGTATGAAGCAAGTGAGATGATCAAGAAGTATCCTAGAAATGGTGATGATGTTCAACTAAAATCTTTCGGTGGCATTACTCGAGATTCAACTCAAGTCAACAATCAAGGCAAGATATCGGAAATCCTAAAAGATAACAAGAATGTTGGGCTCAAGCTTAGTTCAAATACTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAACAGATGAAGGAGATCTTTAGATATCATGATAGCGACAAGGATGGTTTTCTCAATATAAGAGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGTCATATGCGGATGCAAATAAAGATGGCCTTATCGGCGAGGCTGAACTTGACAAACTCATTGATTATGCCCAGAAATTTGTGAAGAAGAAATGA

Protein sequence

MAKYEASEMIKKYPRNGDDVQLKSFGGITRDSTQVNNQGKISEILKDNKNVGLKLSSNTHPKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK
BLAST of CmaCh04G019140 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.4e-38
Identity = 92/163 (56.44%), Postives = 112/163 (68.71%), Query Frame = 1

Query: 2   AKYEASEMIKKYPRNGDDVQLKSFGGITRDSTQVN-NQGKISEILKDNKNVGLKLSSNTH 61
           AKYEAS+++KKY +NG+ V L +F    R STQ+N N+   ++ LK N +V  KLSSN  
Sbjct: 38  AKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQ 97

Query: 62  --------------------PKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFL 121
                                K S +QFSREQ+KEIF+Y+DSD+DGFLNIRE+TKAFA L
Sbjct: 98  LKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALL 157

Query: 122 GSIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           GSI PF KA +GM YAD NKDGLIGE ELDKLI+YA KF+KKK
Sbjct: 158 GSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of CmaCh04G019140 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-36
Identity = 87/163 (53.37%), Postives = 109/163 (66.87%), Query Frame = 1

Query: 1   MAKYEASEMIKKYPRNGDDVQLKSFGGITRDSTQVNNQGKISEILKDNKNVGLKLSSNTH 60
           MA YEAS +IK+Y +NGD V++K+F  + R STQ+ N+  + +ILK +  V  KL S  H
Sbjct: 10  MAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGVAHKLRSEAH 69

Query: 61  --------------------PKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFL 120
                                K+S +  SRE++KEIF+YHD++ DGFLN  ELTKAFAFL
Sbjct: 70  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 129

Query: 121 GSIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           GS+ PF KA YGM YADAN+DGLI EAELDKLIDYA K +KKK
Sbjct: 130 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of CmaCh04G019140 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 89/162 (54.94%), Postives = 112/162 (69.14%), Query Frame = 1

Query: 2   AKYEASEMIKKYPRNGDDV----QLKSFGGITRDSTQVNNQGKISE--ILKDNKNVGLKL 61
           AK EA+E+IKKY RNGD V    +L+SF    R STQ+NN   +S   + K N+N+  K+
Sbjct: 10  AKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKV 69

Query: 62  SSNT--------------HPKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFLG 121
           SSNT                K S +  SREQ+KEIF+YHDS+KDGFL+IRELTKAF+ +G
Sbjct: 70  SSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSSMG 129

Query: 122 SIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           SI+PF KA Y M+YAD ++DGL+ EAELDKLIDYA K +KKK
Sbjct: 130 SIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CmaCh04G019140 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-33
Identity = 85/166 (51.20%), Postives = 109/166 (65.66%), Query Frame = 1

Query: 2   AKYEASEMIKKYPRNGDDVQLKSFGGITRDSTQVNN-QGKISEIL--KDNKNVGLKLSSN 61
           AKYEAS+++KK+  N + V LK+F GI   ST++NN Q   +EI+    N  V   L+SN
Sbjct: 11  AKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 70

Query: 62  THP---------------------KTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAF 121
            +                      K S +QFSREQ+KEIF+YHDSD DGFLN+RE+TKAF
Sbjct: 71  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 130

Query: 122 AFLGSIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           AFLG+I+P  KA +GM YADANKDGLI + EL+KL+DYA KF  K+
Sbjct: 131 AFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of CmaCh04G019140 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 1

Query: 61  PKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMSYADANK 120
           P  SK  FSRE+MKEIFR HD D DG+L+I EL KA  FLG  IPF KA YGM+Y D N 
Sbjct: 4   PGVSKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENG 63

Query: 121 DGLIGEAELDKLIDYAQKFVKKK 144
           DGLI E ELDKLIDYA++F K++
Sbjct: 64  DGLISEDELDKLIDYAERFQKRR 86

BLAST of CmaCh04G019140 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 6.3e-38
Identity = 92/163 (56.44%), Postives = 112/163 (68.71%), Query Frame = 1

Query: 2   AKYEASEMIKKYPRNGDDVQLKSFGGITRDSTQVN-NQGKISEILKDNKNVGLKLSSNTH 61
           AKYEAS+++KKY +NG+ V L +F    R STQ+N N+   ++ LK N +V  KLSSN  
Sbjct: 38  AKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQ 97

Query: 62  --------------------PKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFL 121
                                K S +QFSREQ+KEIF+Y+DSD+DGFLNIRE+TKAFA L
Sbjct: 98  LKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALL 157

Query: 122 GSIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           GSI PF KA +GM YAD NKDGLIGE ELDKLI+YA KF+KKK
Sbjct: 158 GSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of CmaCh04G019140 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 4.5e-36
Identity = 87/163 (53.37%), Postives = 109/163 (66.87%), Query Frame = 1

Query: 1   MAKYEASEMIKKYPRNGDDVQLKSFGGITRDSTQVNNQGKISEILKDNKNVGLKLSSNTH 60
           MA YEAS +IK+Y +NGD V++K+F  + R STQ+ N+  + +ILK +  V  KL S  H
Sbjct: 10  MAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGVAHKLRSEAH 69

Query: 61  --------------------PKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFL 120
                                K+S +  SRE++KEIF+YHD++ DGFLN  ELTKAFAFL
Sbjct: 70  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 129

Query: 121 GSIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           GS+ PF KA YGM YADAN+DGLI EAELDKLIDYA K +KKK
Sbjct: 130 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of CmaCh04G019140 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 2.2e-35
Identity = 89/162 (54.94%), Postives = 112/162 (69.14%), Query Frame = 1

Query: 2   AKYEASEMIKKYPRNGDDV----QLKSFGGITRDSTQVNNQGKISE--ILKDNKNVGLKL 61
           AK EA+E+IKKY RNGD V    +L+SF    R STQ+NN   +S   + K N+N+  K+
Sbjct: 10  AKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKV 69

Query: 62  SSNT--------------HPKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFLG 121
           SSNT                K S +  SREQ+KEIF+YHDS+KDGFL+IRELTKAF+ +G
Sbjct: 70  SSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSSMG 129

Query: 122 SIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           SI+PF KA Y M+YAD ++DGL+ EAELDKLIDYA K +KKK
Sbjct: 130 SIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CmaCh04G019140 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 85/166 (51.20%), Postives = 109/166 (65.66%), Query Frame = 1

Query: 2   AKYEASEMIKKYPRNGDDVQLKSFGGITRDSTQVNN-QGKISEIL--KDNKNVGLKLSSN 61
           AKYEAS+++KK+  N + V LK+F GI   ST++NN Q   +EI+    N  V   L+SN
Sbjct: 11  AKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 70

Query: 62  THP---------------------KTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAF 121
            +                      K S +QFSREQ+KEIF+YHDSD DGFLN+RE+TKAF
Sbjct: 71  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 130

Query: 122 AFLGSIIPFEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           AFLG+I+P  KA +GM YADANKDGLI + EL+KL+DYA KF  K+
Sbjct: 131 AFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of CmaCh04G019140 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-31
Identity = 84/158 (53.16%), Postives = 103/158 (65.19%), Query Frame = 1

Query: 2   AKYEASEMIKKYPRNGDDVQLKSFGGITRDSTQVNNQGKISE--ILKDNKNVGLKLSSNT 61
           AK EASE+IKKY RNGD V  K          ++ N   +S   I K N+N+  K+SSNT
Sbjct: 10  AKIEASELIKKYDRNGDGVLTKEELQSFLHDARLKNIRFVSSSTIPKTNENLDQKVSSNT 69

Query: 62  HPKTSK--------------LQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIP 121
             K  K              +  SREQ+KEIF+YHDS+KDGFL+IRELTKAF  LGSI+P
Sbjct: 70  RIKPKKQLLDKAQDSLRQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFGSLGSIVP 129

Query: 122 FEKASYGMSYADANKDGLIGEAELDKLIDYAQKFVKKK 144
           F KA + M+YAD ++DGLI EAEL KLIDYA+K +KKK
Sbjct: 130 FAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLF3_CUCSA4.4e-3856.44Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA3.1e-3653.37Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA1.6e-3554.94Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA1.5e-3351.20Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA1.7e-2165.06Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700194512|gb|KGN49689.1|6.3e-3856.44hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194510|gb|KGN49687.1|4.5e-3653.37hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|2.2e-3554.94PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|2.1e-3351.20hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|1.9e-3153.16PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019140.1CmaCh04G019140.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 73..100
score: 3.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 68..103
score: 12.589coord: 104..139
score: 6
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 6..133
score: 3.6
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 64..131
score: 4.85
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 117..129
score: -coord: 81..93
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 64..136
score: 3.3
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 64..136
score: 3.3