CsaV3_5G015470 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G015470
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Calcium-binding EF-hand
Location	chr5 : 12848501 .. 12850407 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGTATGAAGCAAGTATGTTGATCAAGCAGTATGAAAAAAATGGTGATGCTGTTAAAGTAAAAGCTTTCGATGATGTTAGAAGTTCAACTCAAATTGGCAATCGAGAAAGTGTACTGAAAATCCTAAAACCTAGTGACGGTGTTGCACACAAGCTTCGTTCAGAAGCACATATACAACCAACTCAGCGAACTGGAGGAAAGGGTAAAAAGTCCATCACAAGGGTTCTTGACAGAAAGTCATCTAATATGTCACTTAGTCGAGAGCGAATAAAGGAAATTTTCCAATATCATGATAACAACAATGATGGTTTTCTTAACAGAATGGAACTCACTAAAGCTTTCGCATTTTTAGGCTCAATGTTTCCATTTTACAAAGCTTGCTACGGAATGGTATATGCAGATGCAAATGAAGATGGTCTTATCAGTGAAGCTGAGCTTGACAAACTCATTGATTATGCGAGTAAAATTATCAAGAAGAAATAACTTTTAGGCTATTTTTTTACATGTGTTTCAAATATGACAGTGAACTTCAAAGAACCACTACAAATAAATATTTAAACAAATATGTAAAATAGTAGTATATTTGAAATAAAAATTACCACTTTTTTTTTTAACTTAGGTTGATGGTTTGTACTTTGTATCTTGGTATTAAAACTAGAAAAATTGCATCATATAATAAAAACATTTAGAAAAATATAGCCGATGACACCTTTTTTTTTTGCATATTTGTAAACATGATAAATGTGACAAGTAATTAGTGATATTAGATGGTTATTGGAGAGTTATCAATTTTTAAGTCGACTACTTTTACAATTTAGAAAATATAGTGACATGAATCTTATTATCATAACTTTTTTTTTTTTGCTATTTATGGAAATGCCCCTATTGCAAACTCAAAAACGTTGAAATCACCTAAACCAAAACAAAGCATATAATTTGATGTTTGATTCGACTCACGATGTTTACATTATATATATGTTATACTAGTAATCTAATCATGTTTTAAACCCAATCACTTGGGTGTATTTTATGTGTCCTTGTAACTCAATCCATGTTTAACTTATGTTATACATGAATGATATTGATGATGTTTTCGATTTTAAATGAGAAAGAACTCTCCATTAGTAACAAATGCTTATCAATTAAGTAGAGGAAATTACTATGTAACGGGAAGAACTATGACCTTATTGTTGGAATTCATGTCCTAACACTCGTAGTTTTTTTGTAGCTTAAAATTATATTCTATTAACGAAGTGGTCAGTGAGGGCTTATTAGTGAAAATTGAATACTATAATCTCGAATCCAATAAACTAATGTCTCGAGGCTATCTAGGGTAGAATTGAACTTTATGTAGAAATATAAACGTGGACGAAGTTCGAGTATATCGCCTCAACGGTCTATAGTATATAAATAATGTTGGACGCCTTATTTTGGAGACATTATAGATGCGACTCACTTTGTAGTTAGTACAAACGATGTGATATTGAATTGTTCATGTGTGGAGACATGGAAGTAGGGACATCATATGTAAAGAGTCTACATAAGACTGGAACTATGAAATAATCACTATTACATTATAACATTGTTAATTGTAAAAAACTGATAATATAAAAAAAAAAAAAGCGTATTTTTCGATACGTGTATTACTCTTATGGGTTTCTTCTAGTTTTGCTATTTTTCCTTTCATTTTCTTCTAATTTTTCATTCAATTTTCTTTTGTTTTCCATGTTGGGTTTCTTCTGGGTTGTAGTATTTTGTTTTAAAAAAATAGAGAATCTCCCGATGCACAAAATGTAGCGTCGAGAGATCCCTTTGACATTTTTTGACGATTAAATAAAACATTGAGAGATGTCAAAGGATCTTCAAACACTTTATTTTGTGCTACAGGAGATCCTCTCTAG

mRNA sequence

ATGGCTATGTATGAAGCAAGTATGTTGATCAAGCAGTATGAAAAAAATGGTGATGCTGTTAAAGTAAAAGCTTTCGATGATGTTAGAAGTTCAACTCAAATTGGCAATCGAGAAAGTGTACTGAAAATCCTAAAACCTAGTGACGGTGTTGCACACAAGCTTCGTTCAGAAGCACATATACAACCAACTCAGCGAACTGGAGGAAAGGGTAAAAAGTCCATCACAAGGGTTCTTGACAGAAAGTCATCTAATATGTCACTTAGTCGAGAGCGAATAAAGGAAATTTTCCAATATCATGATAACAACAATGATGGTTTTCTTAACAGAATGGAACTCACTAAAGCTTTCGCATTTTTAGGCTCAATGTTTCCATTTTACAAAGCTTGCTACGGAATGGTATATGCAGATGCAAATGAAGATGGTCTTATCAGTGAAGCTGAGCTTGACAAACTCATTGATTATGCGAGAGATCCTCTCTAG

Coding sequence (CDS)

ATGGCTATGTATGAAGCAAGTATGTTGATCAAGCAGTATGAAAAAAATGGTGATGCTGTTAAAGTAAAAGCTTTCGATGATGTTAGAAGTTCAACTCAAATTGGCAATCGAGAAAGTGTACTGAAAATCCTAAAACCTAGTGACGGTGTTGCACACAAGCTTCGTTCAGAAGCACATATACAACCAACTCAGCGAACTGGAGGAAAGGGTAAAAAGTCCATCACAAGGGTTCTTGACAGAAAGTCATCTAATATGTCACTTAGTCGAGAGCGAATAAAGGAAATTTTCCAATATCATGATAACAACAATGATGGTTTTCTTAACAGAATGGAACTCACTAAAGCTTTCGCATTTTTAGGCTCAATGTTTCCATTTTACAAAGCTTGCTACGGAATGGTATATGCAGATGCAAATGAAGATGGTCTTATCAGTGAAGCTGAGCTTGACAAACTCATTGATTATGCGAGAGATCCTCTCTAG

Protein sequence

MAMYEASMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYARDPL

Homology

[Close]

BLAST of CsaV3_5G015470 vs. NCBI nr
Match: KGN49687.1 (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 8.4e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAMYEASMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHI 60
           MAMYEASMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHI
Sbjct: 10  MAMYEASMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHI 69

Query: 61  QPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLG 120
           QPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLG
Sbjct: 70  QPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLG 129

Query: 121 SMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           SMFPFYKACYGMVYADANEDGLISEAELDKLIDYA
Sbjct: 130 SMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 164

[Close]

BLAST of CsaV3_5G015470 vs. NCBI nr
Match: KGN49689.1 (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 95/156 (60.90%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 2   AMYEASMLIKQYEKNGDAVKVKAF-DDVRSSTQIG-NRESVLKILKPSDGVAHKLRSEAH 61
           A YEAS L+K+YE+NG+ V + AF D+ R STQI  NRE   K LKP+D VAHKL S A 
Sbjct: 38  AKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQ 97

Query: 62  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 121
           ++   +  GK +  I RV D K+SNM  SRE+IKEIFQY+D++ DGFLN  E+TKAFA L
Sbjct: 98  LKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALL 157

Query: 122 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           GS+FPF KA +GMVYAD N+DGLI E ELDKLI+YA
Sbjct: 158 GSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYA 193

[Close]

BLAST of CsaV3_5G015470 vs. NCBI nr
Match: KGN49690.1 (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 8.0e-38
Identity = 91/159 (57.23%), Postives = 124/159 (77.99%), Query Frame = 0


Query: 2   AMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLK--ILKPSD-GVAHKLRSE 61
           A YEAS L+K++E N + V +KAF+ +  +ST+I N++++    ILKPS+  VAH L S 
Sbjct: 11  AKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 70

Query: 62  AHIQPTQRTG-GKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAF 121
           A++ P+++ G GK + + T VLD K+SNM  SRE+IKEIFQYHD++NDGFLN  E+TKAF
Sbjct: 71  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 130

Query: 122 AFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           AFLG++ P YKA +GMVYADAN+DGLIS+ EL+KL+DYA
Sbjct: 131 AFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYA 169

[Close]

BLAST of CsaV3_5G015470 vs. NCBI nr
Match: XP_023538396.1 (probable calcium-binding protein CML11 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 4.0e-37
Identity = 87/156 (55.77%), Postives = 111/156 (71.15%), Query Frame = 0


Query: 5   EASMLIKQYEKNGDAVKVKA-----FDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAH 64
           EA+ L+K+Y++NGD V  K        DVR STQ+ N+  + KI K +D  AHKL S AH
Sbjct: 13  EANELMKKYDRNGDGVLTKEELQFFLRDVRGSTQLNNQGFLSKIPKTNDKGAHKLSSNAH 72

Query: 65  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 124
             P  +  GK   S T+V   K SN+ LSRE+IK+IF+Y+D++ DGFLNR E+TKAF+FL
Sbjct: 73  TNPKIQVQGKATNSSTKVFGEKVSNVPLSREQIKKIFKYYDSDKDGFLNRREVTKAFSFL 132

Query: 125 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           GS+ PFYKA Y M +ADAN DGLISEAEL+KL+DYA
Sbjct: 133 GSINPFYKAQYAMTFADANNDGLISEAELEKLVDYA 168

[Close]

BLAST of CsaV3_5G015470 vs. NCBI nr
Match: XP_022951798.1 (probable calcium-binding protein CML11 [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 3.4e-36
Identity = 86/156 (55.13%), Postives = 111/156 (71.15%), Query Frame = 0


Query: 5   EASMLIKQYEKNGDAVKVKA-----FDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAH 64
           EA+ L+K+Y++NGD V  K        DVR STQ+ ++  + KI K +D  AH+L S AH
Sbjct: 13  EANELMKKYDRNGDGVLTKEELQVFLRDVRGSTQLNHQRFLSKIPKTNDKGAHQLSSNAH 72

Query: 65  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 124
             P  +  G   KS T+VL  K SN+ LSRE+IK+IF+Y+D++ DGFLN  E+TKAF+FL
Sbjct: 73  TNPKIQVQGTATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDGFLNTREVTKAFSFL 132

Query: 125 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           GS+ PFYKA Y M +ADAN DGLISEAEL+KLIDYA
Sbjct: 133 GSINPFYKAQYAMTFADANNDGLISEAELEKLIDYA 168

[Close]

BLAST of CsaV3_5G015470 vs. TrEMBL
Match: tr|A0A0A0KMQ1|A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.6e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAMYEASMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHI 60
           MAMYEASMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHI
Sbjct: 10  MAMYEASMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESVLKILKPSDGVAHKLRSEAHI 69

Query: 61  QPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLG 120
           QPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLG
Sbjct: 70  QPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLG 129

Query: 121 SMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           SMFPFYKACYGMVYADANEDGLISEAELDKLIDYA
Sbjct: 130 SMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 164

[Close]

BLAST of CsaV3_5G015470 vs. TrEMBL
Match: tr|A0A0A0KLF3|A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.7e-41
Identity = 95/156 (60.90%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 2   AMYEASMLIKQYEKNGDAVKVKAF-DDVRSSTQIG-NRESVLKILKPSDGVAHKLRSEAH 61
           A YEAS L+K+YE+NG+ V + AF D+ R STQI  NRE   K LKP+D VAHKL S A 
Sbjct: 38  AKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQ 97

Query: 62  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 121
           ++   +  GK +  I RV D K+SNM  SRE+IKEIFQY+D++ DGFLN  E+TKAFA L
Sbjct: 98  LKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALL 157

Query: 122 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           GS+FPF KA +GMVYAD N+DGLI E ELDKLI+YA
Sbjct: 158 GSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYA 193

[Close]

BLAST of CsaV3_5G015470 vs. TrEMBL
Match: tr|A0A0A0KIY4|A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.3e-38
Identity = 91/159 (57.23%), Postives = 124/159 (77.99%), Query Frame = 0


Query: 2   AMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLK--ILKPSD-GVAHKLRSE 61
           A YEAS L+K++E N + V +KAF+ +  +ST+I N++++    ILKPS+  VAH L S 
Sbjct: 11  AKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 70

Query: 62  AHIQPTQRTG-GKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAF 121
           A++ P+++ G GK + + T VLD K+SNM  SRE+IKEIFQYHD++NDGFLN  E+TKAF
Sbjct: 71  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 130

Query: 122 AFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           AFLG++ P YKA +GMVYADAN+DGLIS+ EL+KL+DYA
Sbjct: 131 AFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYA 169

[Close]

BLAST of CsaV3_5G015470 vs. TrEMBL
Match: tr|A0A0A0LRC8|A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 80/161 (49.69%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 2   AMYEASMLIKQYEKNGDAVKVKA-----FDDVRSSTQIGNRESVLK--ILKPSDGVAHKL 61
           A  EA+ LIK+Y++NGD V  K        D R STQ+ N  +V    + K ++ +A K+
Sbjct: 10  AKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKV 69

Query: 62  RSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTK 121
            S   I P ++   K + S       K SN+ LSRE+IKEIF+YHD+N DGFL+  ELTK
Sbjct: 70  SSNTCITPKKQLLDKAQGS------SKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTK 129

Query: 122 AFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
           AF+ +GS+ PF KA Y M YAD +EDGL+SEAELDKLIDYA
Sbjct: 130 AFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYA 164

[Close]

BLAST of CsaV3_5G015470 vs. TrEMBL
Match: tr|A0A1S3BDW2|A0A1S3BDW2_CUCME (probable calcium-binding protein CML11 OS=Cucumis melo OX=3656 GN=LOC103488544 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 74/159 (46.54%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 2   AMYEASMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESV-----LKILKPSDGVAHKLRS 61
           A  EAS LIK+Y++NGD V  K  ++++S       +++       I K ++ +  K+ S
Sbjct: 10  AKIEASELIKKYDRNGDGVLTK--EELQSFLHDARLKNIRFVSSSTIPKTNENLDQKVSS 69

Query: 62  EAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAF 121
              I+P ++   K + S+      + SN+ LSRE+IKEIF+YHD+N DGFL+  ELTKAF
Sbjct: 70  NTRIKPKKQLLDKAQDSL------RQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAF 129

Query: 122 AFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYA 156
             LGS+ PF KA + M YAD +EDGLISEAEL KLIDYA
Sbjct: 130 GSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYA 160

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49687.1	8.4e-80	100.00	hypothetical protein Csa_5G067410 [Cucumis sativus]	[more]
KGN49689.1	1.0e-40	60.90	hypothetical protein Csa_5G067670 [Cucumis sativus]	[more]
KGN49690.1	8.0e-38	57.23	hypothetical protein Csa_5G068170 [Cucumis sativus]	[more]
XP_023538396.1	4.0e-37	55.77	probable calcium-binding protein CML11 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022951798.1	3.4e-36	55.13	probable calcium-binding protein CML11 [Cucurbita moschata]	[more]

BLAST of CsaV3_5G015470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMQ1\|A0A0A0KMQ1_CUCSA	5.6e-80	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1	[more]
tr\|A0A0A0KLF3\|A0A0A0KLF3_CUCSA	6.7e-41	60.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067670 PE=4 SV=1	[more]
tr\|A0A0A0KIY4\|A0A0A0KIY4_CUCSA	5.3e-38	57.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1	[more]
tr\|A0A0A0LRC8\|A0A0A0LRC8_CUCSA	1.0e-28	49.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359950 PE=4 SV=1	[more]
tr\|A0A1S3BDW2\|A0A1S3BDW2_CUCME	3.0e-25	46.54	probable calcium-binding protein CML11 OS=Cucumis melo OX=3656 GN=LOC103488544 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015470.1	CsaV3_5G015470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 91..119 e-value: 3.3E-5 score: 23.4
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 135..151 e-value: 0.061 score: 12.8
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 136..158 score: 5.894
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 87..122 score: 12.7
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 50..152 e-value: 2.8E-10 score: 42.2
None	No IPR available	PANTHER	PTHR44455	FAMILY NOT NAMED	coord: 80..157
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 100..112
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 136..148
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 85..150

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G015470	CSPI05G01480	Wild cucumber (PI 183967)	cpicucB286
CsaV3_5G015470	Cucsa.261780	Cucumber (Gy14) v1	cgycucB403
CsaV3_5G015470	CmaCh04G019140	Cucurbita maxima (Rimu)	cmacucB0903
CsaV3_5G015470	CmoCh04G020320	Cucurbita moschata (Rifu)	cmocucB0895
CsaV3_5G015470	CsGy5G011640	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G015470	Cla001912	Watermelon (97103) v1	cucwmB461
CsaV3_5G015470	ClCG11G000380	Watermelon (Charleston Gray)	cucwcgB383
CsaV3_5G015470	Lsi11G000760	Bottle gourd (USVL1VR-Ls)	cuclsiB362
CsaV3_5G015470	MELO3C026462.2	Melon (DHL92) v3.6.1	cucmedB381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None