Cucsa.261780 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.261780
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCalcium-binding EF-hand family protein, putative
Locationscaffold02265 : 329661 .. 330149 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGTATGAAGCAAGTATGTTGATCAAGCAGTATGAAAAAAaTGGTGATGCTGTTAAAGTAAAAGCTTTAGATGATGTTAGAAGTTCAACTCAAATTGGCAATCGAGAAAGTGTACTGAAAATCCTAAAACCTAGTGACGGTGTTGCACACAAGCTTCGTTCAGAAGCACATATACAACCAACTCAGCGAACTGGAGGAAAGGGTAAAAAGTCCATCACAAGGGTTCTTGACAGAAAGTCATCTAATATGTCACTTAGTCGAGAGCGAATAAAGGAAATTTTCCAATATCATGATAACAACAATGATGGTTTTCTTAACAGACTGGAACTCACTAAAGCTTTCGCATTTTTAGGCTCAATGTTTCCATTTTACAAAGCTTGCTACGGAATGGTATATGCAGATGCAAATGAAGATGGCCTTATCAGTGAAGCTGAGCTTGACAAACTCATTGATTATGCGAGTAAAATTATCAAGAAGAAATAA

mRNA sequence

ATGGCTATCTTCGTTCAGAAGCACATATACAACCAACTCAGCGAACTGGAGGAAAGGTCATCTAATATGTCACTTAGTCGAGAGCGAATAAAGGAAATTTTCCAATATCATGATAACAACAATGATGGTTTTCTTAACAGACTGGAACTCACTAAAGCTTTCGCATTTTTAGGCTCAATGTTTCCATTTTACAAAGCTTGCTACGGAATGGTATATGCAGATGCAAATGAAGATGGCCTTATCAGTGAAGCTGAGCTTGACAAACTCATTGATTATGCGAGTAAAATTATCAAGAAGAAATAA

Coding sequence (CDS)

ATGGCTATCTTCGTTCAGAAGCACATATACAACCAACTCAGCGAACTGGAGGAAAGGTCATCTAATATGTCACTTAGTCGAGAGCGAATAAAGGAAATTTTCCAATATCATGATAACAACAATGATGGTTTTCTTAACAGACTGGAACTCACTAAAGCTTTCGCATTTTTAGGCTCAATGTTTCCATTTTACAAAGCTTGCTACGGAATGGTATATGCAGATGCAAATGAAGATGGCCTTATCAGTGAAGCTGAGCTTGACAAACTCATTGATTATGCGAGTAAAATTATCAAGAAGAAATAA

Protein sequence

MAIFVQKHIYNQLSELEERSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK*
Homology
[Close]
BLAST of Cucsa.261780 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.1e-39
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 1 

Query: 16  LEERSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADA 75
           L+ +SSNMSLSRERIKEIFQYHDNNNDGFLNR+ELTKAFAFLGSMFPFYKACYGMVYADA
Sbjct: 87  LDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADA 146

Query: 76  NEDGLISEAELDKLIDYASKIIKKK 101
           NEDGLISEAELDKLIDYASKIIKKK
Sbjct: 147 NEDGLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of Cucsa.261780 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-25
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 1 

Query: 14  SELEERSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYA 73
           S L+ ++SNM  SRE+IKEIFQYHD++NDGFLN  E+TKAFAFLG++ P YKA +GMVYA
Sbjct: 90  SVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYA 149

Query: 74  DANEDGLISEAELDKLIDYASKIIKKK 101
           DAN+DGLIS+ EL+KL+DYA K   K+
Sbjct: 150 DANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of Cucsa.261780 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-24
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 1 

Query: 17  EERSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADAN 76
           + ++SNM  SRE+IKEIFQY+D++ DGFLN  E+TKAFA LGS+FPF KA +GMVYAD N
Sbjct: 117 DTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALLGSIFPFNKAYHGMVYADTN 176

Query: 77  EDGLISEAELDKLIDYASKIIKKK 101
           +DGLI E ELDKLI+YA+K +KKK
Sbjct: 177 KDGLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of Cucsa.261780 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-24
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 19  RSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADANED 78
           + SN+ LSRE+IKEIF+YHD+N DGFL+  ELTKAF+ +GS+ PF KA Y M YAD +ED
Sbjct: 90  KQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSSMGSIVPFCKARYAMAYADVDED 149

Query: 79  GLISEAELDKLIDYASKIIKKK 101
           GL+SEAELDKLIDYA KIIKKK
Sbjct: 150 GLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of Cucsa.261780 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 21  SNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADANEDGL 80
           S  + SRE +KEIF+ HD + DG+L+  EL KA  FLG   PFYKA YGM Y D N DGL
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 81  ISEAELDKLIDYASKIIKKK 101
           ISE ELDKLIDYA +  K++
Sbjct: 67  ISEDELDKLIDYAERFQKRR 86

[Close]
BLAST of Cucsa.261780 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 1 

Query: 16  LEERSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADA 75
           L+ +SSNMSLSRERIKEIFQYHDNNNDGFLNR+ELTKAFAFLGSMFPFYKACYGMVYADA
Sbjct: 87  LDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADA 146

Query: 76  NEDGLISEAELDKLIDYASKIIKKK 101
           NEDGLISEAELDKLIDYASKIIKKK
Sbjct: 147 NEDGLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of Cucsa.261780 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-25
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 1 

Query: 14  SELEERSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYA 73
           S L+ ++SNM  SRE+IKEIFQYHD++NDGFLN  E+TKAFAFLG++ P YKA +GMVYA
Sbjct: 90  SVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYA 149

Query: 74  DANEDGLISEAELDKLIDYASKIIKKK 101
           DAN+DGLIS+ EL+KL+DYA K   K+
Sbjct: 150 DANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of Cucsa.261780 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 19  RSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADANED 78
           + SN+ LSRE+IKEIF+YHD+N DGFL+  ELTKAF+ +GS+ PF KA Y M YAD +ED
Sbjct: 90  KQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSSMGSIVPFCKARYAMAYADVDED 149

Query: 79  GLISEAELDKLIDYASKIIKKK 101
           GL+SEAELDKLIDYA KIIKKK
Sbjct: 150 GLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of Cucsa.261780 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 1 

Query: 17  EERSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADAN 76
           + ++SNM  SRE+IKEIFQY+D++ DGFLN  E+TKAFA LGS+FPF KA +GMVYAD N
Sbjct: 117 DTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALLGSIFPFNKAYHGMVYADTN 176

Query: 77  EDGLISEAELDKLIDYASKIIKKK 101
           +DGLI E ELDKLI+YA+K +KKK
Sbjct: 177 KDGLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of Cucsa.261780 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-23
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 19  RSSNMSLSRERIKEIFQYHDNNNDGFLNRLELTKAFAFLGSMFPFYKACYGMVYADANED 78
           R SN+ LSRE+IKEIF+YHD+N DGFL+  ELTKAF  LGS+ PF KA + M YAD +ED
Sbjct: 86  RQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFGSLGSIVPFAKARHAMAYADVDED 145

Query: 79  GLISEAELDKLIDYASKIIKKK 101
           GLISEAEL KLIDYA KIIKKK
Sbjct: 146 GLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
BLAST of Cucsa.261780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMQ1_CUCSA8.1e-3995.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA2.3e-2566.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0KLF3_CUCSA2.5e-2467.86Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA2.5e-2470.73Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA3.0e-1758.75Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
BLAST of Cucsa.261780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194510|gb|KGN49687.1|1.2e-3895.29hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|3.3e-2566.67hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|3.6e-2470.73PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|700194512|gb|KGN49689.1|3.6e-2467.86hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|1.8e-2371.95PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.261780.1Cucsa.261780.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 73..89
score: 0
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 29..57
score: 2.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 74..96
score: 5.726coord: 25..60
score:
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 20..91
score: 5.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 21..88
score: 1.31
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 74..86
score: -coord: 38..50
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 20..93
score: 6.4
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 20..93
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.261780Csa5G067670Cucumber (Chinese Long) v2cgycuB378
Cucsa.261780CSPI05G01480Wild cucumber (PI 183967)cgycpiB398
Cucsa.261780CsaV3_5G015470Cucumber (Chinese Long) v3cgycucB403
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None