ClCG10G010060 (gene) Watermelon (Charleston Gray)

Overview
NameClCG10G010060
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPhytosulfokines 3 family protein
LocationCG_Chr10 : 22685882 .. 22686337 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTTCTCATATGGCTTCCAGACCTTTAACTTCCATCTTCACACTTCTCTTCCTTTACCTCTTTTTTTCCTCCTCTTTGATGACCACCGTTGCTGCTCGGCCCGTGCCTGGTTTTTCAAATGCTTCTCCCAGGACTTCTCGAGATGGGGTACGTAAATTTATCAGCATTTTCTCTTGTTAATATCATTTTTTTGGAAGAAAGAAAAGTAAGTATTTTTACTTTTTGGGTTGTAGTTAAAGGTTGTGGATGATGTTTCGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGTAGATTATATCTACACAGATGCTCAGAAGCCATGAGATTTTTTGCACATTTAATTTTCACTTTTTAGTTTTTTTTCCCCATTGTACATTCTCACTCATAATAGATTTAAGGGAATTAAAATGAAAATGTG

mRNA sequence

CTCTTTCTCATATGGCTTCCAGACCTTTAACTTCCATCTTCACACTTCTCTTCCTTTACCTCTTTTTTTCCTCCTCTTTGATGACCACCGTTGCTGCTCGGCCCGTGCCTGGTTTTTCAAATGCTTCTCCCAGGACTTCTCGAGATGGGTTAAAGGTTGTGGATGATGTTTCGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGTAGATTATATCTACACAGATGCTCAGAAGCCATGAGATTTTTTGCACATTTAATTTTCACTTTTTAGTTTTTTTTCCCCATTGTACATTCTCACTCATAATAGATTTAAGGGAATTAAAATGAAAATGTG

Coding sequence (CDS)

ATGGCTTCCAGACCTTTAACTTCCATCTTCACACTTCTCTTCCTTTACCTCTTTTTTTCCTCCTCTTTGATGACCACCGTTGCTGCTCGGCCCGTGCCTGGTTTTTCAAATGCTTCTCCCAGGACTTCTCGAGATGGGTTAAAGGTTGTGGATGATGTTTCGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGTAGATTATATCTACACAGATGCTCAGAAGCCATGA

Protein sequence

MASRPLTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLKVVDDVSEEESCDEIGEEYCLMRKTLAAHVDYIYTDAQKP
Homology
[Close]
BLAST of ClCG10G010060 vs. Swiss-Prot
Match: PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-09
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1 

Query: 11 TLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLKVVDDVSEEESCDEIGEEYCLMR 70
          TLL + L FS SL    AARP+       P  S   + V+ +   +E+C+ +GEE CLMR
Sbjct: 7  TLLLIALLFSLSLAQ--AARPL------QPADSTKSVHVIPEKVHDEACEGVGEEECLMR 66

Query: 71 KTLAAHVDYIYTDAQKP 88
          +TL AHVDYIYT    P
Sbjct: 67 RTLTAHVDYIYTQDHNP 75

[Close]
BLAST of ClCG10G010060 vs. Swiss-Prot
Match: PSK3_ARATH (Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1 

Query: 10 FTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLKVVD-DVSEEESCDEIGEEYCL 69
          FT +F+      S +T  AAR  P  + A  R   + +K ++ D  EEESC+ IGEE CL
Sbjct: 4  FTTIFIMALLLCSTLT-YAARLTPTTTTALSR--ENSVKEIEGDKVEEESCNGIGEEECL 63

Query: 70 MRKTLAAHVDYIYTDAQKP 88
          +R++L  H DYIYT   KP
Sbjct: 64 IRRSLVLHTDYIYTQNHKP 79

[Close]
BLAST of ClCG10G010060 vs. TrEMBL
Match: A0A0A0KY18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-29
Identity = 68/87 (78.16%), Postives = 73/87 (83.91%), Query Frame = 1 

Query: 1  MASRPLTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLKVVDDVSEEESCD 60
          MAS+  TSI+  LFL+LFFSSS  T +AARPVPGFSNA   TSRDG+ V DDV EEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDAQKP 88
          EIGEEYCLMRKTLAAHVDYIYTD QKP
Sbjct: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]
BLAST of ClCG10G010060 vs. TrEMBL
Match: A0A061DP82_THECC (Phytosulfokines 3, putative OS=Theobroma cacao GN=TCM_000832 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.0e-11
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1 

Query: 6  LTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASP-RTSRDGLKVVDDVSEEESCDEIGE 65
          +  + TL  L L   S+L  + AAR  P F N SP +T  +G++  +  + E+SC+ +GE
Sbjct: 1  MAKLATLFILTLLLVSTL--SFAARSGPAFPNESPAKTQPEGVETENTEAVEDSCEGVGE 60

Query: 66 EYCLMRKTLAAHVDYIYTDAQKP 88
          E CLMR+TLAAH+DYIYT  QKP
Sbjct: 61 EECLMRRTLAAHIDYIYTQKQKP 81

[Close]
BLAST of ClCG10G010060 vs. TrEMBL
Match: M5VYE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1 

Query: 1  MASRPLTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLK--VVDDVSEEES 60
          MAS+  +  F  L L+L  SSS     AARP+P   +A+   ++D LK   V+    EES
Sbjct: 1  MASKLTSLCFIALILFLSLSSS-----AARPLPSAFDANAMKAQDELKDVEVEKAMVEES 60

Query: 61 CDEIGEEYCLMRKTLAAHVDYIYTDAQKP 88
          C+ +GEE CLMR+TLAAH+DYIYT    P
Sbjct: 61 CEGVGEEECLMRRTLAAHIDYIYTQKNNP 84

[Close]
BLAST of ClCG10G010060 vs. TrEMBL
Match: Q7PCB5_GOSAR (Phytosulfokines OS=Gossypium arboreum GN=PSK1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 6  LTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASP-RTSRDGLKVVDDVSE-EESCDEIG 65
          +  + +L  L L   S+L  + AAR  P F N SP +T   G    D++ + E+ C+ +G
Sbjct: 1  MAKLASLFILTLLLVSTLSFSFAARSGPAFPNDSPAKTQSQGTTTTDEIEQSEDRCEGVG 60

Query: 66 EEYCLMRKTLAAHVDYIYTDAQKP 88
          E+ CLMR+TLAAH+DYIYT  QKP
Sbjct: 61 EDECLMRRTLAAHLDYIYTQKQKP 84

[Close]
BLAST of ClCG10G010060 vs. TrEMBL
Match: B9HFY9_POPTR (Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-10
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 1 

Query: 1  MASRPLTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLKVVDDVSEE---E 60
          MA+  +T++F ++ L L   S+L  T AARP PGF N S   +++  KVVD    E   E
Sbjct: 1  MANVKVTTLFLIVSLLL--CSTL--TYAARPEPGFPNGS--LAKNQQKVVDAEHAEVMEE 60

Query: 61 SCDEIGEEYCLMRKTLAAHVDYIYTDAQKP 88
          SC+ +GEE CLMR+TLAAH DYIYT   KP
Sbjct: 61 SCEGVGEEECLMRRTLAAHTDYIYTQKHKP 84

[Close]
BLAST of ClCG10G010060 vs. TAIR10
Match: AT3G49780.1 (AT3G49780.1 phytosulfokine 4 precursor)

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-09
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1 

Query: 10 FTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLKVVD-DVSEEESCDEIGEEYCL 69
          FT +F+      S +T  AAR  P  + A  R   + +K ++ D  EEESC+ IGEE CL
Sbjct: 4  FTTIFIMALLLCSTLT-YAARLTPTTTTALSR--ENSVKEIEGDKVEEESCNGIGEEECL 63

Query: 70 MRKTLAAHVDYIYTDAQKP 88
          +R++L  H DYIYT   KP
Sbjct: 64 IRRSLVLHTDYIYTQNHKP 79

[Close]
BLAST of ClCG10G010060 vs. TAIR10
Match: AT4G37720.1 (AT4G37720.1 phytosulfokine 6 precursor)

HSP 1 Score: 50.1 bits (118), Expect = 8.2e-07
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 

Query: 6  LTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRD--GLKVVDDVSEE---ESCD 65
          + ++ TL+ + L   ++++T  +ARP P +  +   +  D   L++++    E   ESCD
Sbjct: 1  MANLSTLITIALLLCATMLTC-SARPEPAYFASFTTSPADTLSLEMIESKLHEVAGESCD 60

Query: 66 EIGEEYCLMRKTLAAHVDYIYT 83
          +  +E CL+R+TL AH+DYIYT
Sbjct: 61 KEDDEDCLVRRTLTAHLDYIYT 81

[Close]
BLAST of ClCG10G010060 vs. NCBI nr
Match: gi|449465093|ref|XP_004150263.1| (PREDICTED: phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-29
Identity = 68/87 (78.16%), Postives = 73/87 (83.91%), Query Frame = 1 

Query: 1  MASRPLTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLKVVDDVSEEESCD 60
          MAS+  TSI+  LFL+LFFSSS  T +AARPVPGFSNA   TSRDG+ V DDV EEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDAQKP 88
          EIGEEYCLMRKTLAAHVDYIYTD QKP
Sbjct: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]
BLAST of ClCG10G010060 vs. NCBI nr
Match: gi|659108845|ref|XP_008454416.1| (PREDICTED: phytosulfokines-like [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-28
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 1 

Query: 1  MASRPLTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLKVVDDVSEEESCD 60
          MAS+  TSI+  LFL+LFFSSS  T VAARPVPGFSNA   TSRDG  VVDDV EEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPVAARPVPGFSNAFLDTSRDG--VVDDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDAQKP 88
          EIGE+YCLMRKT+AAHVDYIYTD+QKP
Sbjct: 61 EIGEDYCLMRKTVAAHVDYIYTDSQKP 85

[Close]
BLAST of ClCG10G010060 vs. NCBI nr
Match: gi|590705970|ref|XP_007047591.1| (Phytosulfokines 3 precursor, putative [Theobroma cacao])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1 

Query: 6  LTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASP-RTSRDGLKVVDDVSEEESCDEIGE 65
          +  + TL  L L   S+L  + AAR  P F N SP +T  +G++  +  + E+SC+ +GE
Sbjct: 1  MAKLATLFILTLLLVSTL--SFAARSGPAFPNESPAKTQPEGVETENTEAVEDSCEGVGE 60

Query: 66 EYCLMRKTLAAHVDYIYTDAQKP 88
          E CLMR+TLAAH+DYIYT  QKP
Sbjct: 61 EECLMRRTLAAHIDYIYTQKQKP 81

[Close]
BLAST of ClCG10G010060 vs. NCBI nr
Match: gi|595794051|ref|XP_007200774.1| (hypothetical protein PRUPE_ppa023881mg [Prunus persica])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1 

Query: 1  MASRPLTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASPRTSRDGLK--VVDDVSEEES 60
          MAS+  +  F  L L+L  SSS     AARP+P   +A+   ++D LK   V+    EES
Sbjct: 1  MASKLTSLCFIALILFLSLSSS-----AARPLPSAFDANAMKAQDELKDVEVEKAMVEES 60

Query: 61 CDEIGEEYCLMRKTLAAHVDYIYTDAQKP 88
          C+ +GEE CLMR+TLAAH+DYIYT    P
Sbjct: 61 CEGVGEEECLMRRTLAAHIDYIYTQKNNP 84

[Close]
BLAST of ClCG10G010060 vs. NCBI nr
Match: gi|23466375|tpg|DAA00278.1| (TPA_exp: putative phytosulfokine peptide precursor [Gossypium arboreum])

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 6  LTSIFTLLFLYLFFSSSLMTTVAARPVPGFSNASP-RTSRDGLKVVDDVSE-EESCDEIG 65
          +  + +L  L L   S+L  + AAR  P F N SP +T   G    D++ + E+ C+ +G
Sbjct: 1  MAKLASLFILTLLLVSTLSFSFAARSGPAFPNDSPAKTQSQGTTTTDEIEQSEDRCEGVG 60

Query: 66 EEYCLMRKTLAAHVDYIYTDAQKP 88
          E+ CLMR+TLAAH+DYIYT  QKP
Sbjct: 61 EDECLMRRTLAAHLDYIYTQKQKP 84

The following BLAST results are available for this feature:
BLAST of ClCG10G010060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSK_ASPOF2.2e-0945.45Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1[more]
PSK3_ARATH1.2e-0743.04Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2[more]
BLAST of ClCG10G010060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY18_CUCSA1.7e-2978.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1[more]
A0A061DP82_THECC8.0e-1146.99Phytosulfokines 3, putative OS=Theobroma cacao GN=TCM_000832 PE=4 SV=1[more]
M5VYE0_PRUPE1.4e-1047.19Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1[more]
Q7PCB5_GOSAR2.3e-1044.05Phytosulfokines OS=Gossypium arboreum GN=PSK1 PE=2 SV=1[more]
B9HFY9_POPTR4.0e-1050.00Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=... [more]
BLAST of ClCG10G010060 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49780.16.7e-0943.04 phytosulfokine 4 precursor[more]
AT4G37720.18.2e-0734.15 phytosulfokine 6 precursor[more]
BLAST of ClCG10G010060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465093|ref|XP_004150263.1|2.5e-2978.16PREDICTED: phytosulfokines 3 [Cucumis sativus][more]
gi|659108845|ref|XP_008454416.1|3.6e-2878.16PREDICTED: phytosulfokines-like [Cucumis melo][more]
gi|590705970|ref|XP_007047591.1|1.2e-1046.99Phytosulfokines 3 precursor, putative [Theobroma cacao][more]
gi|595794051|ref|XP_007200774.1|2.0e-1047.19hypothetical protein PRUPE_ppa023881mg [Prunus persica][more]
gi|23466375|tpg|DAA00278.1|3.4e-1044.05TPA_exp: putative phytosulfokine peptide precursor [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009438Phytosulfokine
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Biological Process
TermDefinition
GO:0008283cell proliferation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0040007 growth
biological_process GO:0007165 signal transduction
biological_process GO:0008150 biological_process
cellular_component GO:0005576 extracellular region
cellular_component GO:0005575 cellular_component
molecular_function GO:0008083 growth factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G010060.1ClCG10G010060.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009438PhytosulfokinePFAMPF06404PSKcoord: 49..86
score: 1.7
NoneNo IPR availablePANTHERPTHR33285FAMILY NOT NAMEDcoord: 1..82
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG10G010060Csa4G000620Cucumber (Chinese Long) v2cuwcgB271
ClCG10G010060Cla006452Watermelon (97103) v1wcgwmB051
ClCG10G010060CSPI04G00130Wild cucumber (PI 183967)cpiwcgB280
ClCG10G010060Cucsa.298460Cucumber (Gy14) v1cgywcgB513
ClCG10G010060CmaCh04G004360Cucurbita maxima (Rimu)cmawcgB609
ClCG10G010060CmaCh16G003080Cucurbita maxima (Rimu)cmawcgB280
ClCG10G010060CmoCh04G004660Cucurbita moschata (Rifu)cmowcgB610
ClCG10G010060CmoCh16G003270Cucurbita moschata (Rifu)cmowcgB273
ClCG10G010060Cp4.1LG14g04590Cucurbita pepo (Zucchini)cpewcgB190
ClCG10G010060CsGy4G000140Cucumber (Gy14) v2cgybwcgB251
ClCG10G010060MELO3C032871.2Melon (DHL92) v3.6.1medwcgB446
ClCG10G010060Carg19698Silver-seed gourdcarwcgB0287
ClCG10G010060Carg08110Silver-seed gourdcarwcgB0365
ClCG10G010060CsaV3_4G000100Cucumber (Chinese Long) v3cucwcgB279
ClCG10G010060CsaV3_6G044290Cucumber (Chinese Long) v3cucwcgB450
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG10G010060Cucumber (Gy14) v2cgybwcgB258
ClCG10G010060Cucumber (Gy14) v2cgybwcgB493
ClCG10G010060Melon (DHL92) v3.6.1medwcgB184
ClCG10G010060Cucumber (Chinese Long) v3cucwcgB287
ClCG10G010060Cucumber (Chinese Long) v3cucwcgB556
ClCG10G010060Watermelon (97103) v2wcgwmbB038
ClCG10G010060Watermelon (97103) v2wcgwmbB044
ClCG10G010060Wax gourdwcgwgoB078
ClCG10G010060Watermelon (Charleston Gray)wcgwcgB046
ClCG10G010060Cucumber (Gy14) v1cgywcgB393
ClCG10G010060Cucurbita moschata (Rifu)cmowcgB454
ClCG10G010060Wild cucumber (PI 183967)cpiwcgB288
ClCG10G010060Wild cucumber (PI 183967)cpiwcgB561
ClCG10G010060Cucumber (Chinese Long) v2cuwcgB532
ClCG10G010060Melon (DHL92) v3.5.1mewcgB189
ClCG10G010060Melon (DHL92) v3.5.1mewcgB452
ClCG10G010060Melon (DHL92) v3.5.1mewcgB453
ClCG10G010060Cucurbita pepo (Zucchini)cpewcgB345
ClCG10G010060Bottle gourd (USVL1VR-Ls)lsiwcgB219
ClCG10G010060Bottle gourd (USVL1VR-Ls)lsiwcgB223