Cucsa.298460 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.298460
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Phytosulfokines 3 family protein
Location	scaffold02901 : 90600 .. 91314 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTCTCTCTCTCTCTCATATGGCCTCCAAACTCTTCACCTCCATCTACCCTTTTCTCTTCCTCTTCCTCTTCTTTTCCTCCTCCTCCACCACCCCCATTGCTGCTCGGCCCGTCCCCGGTTTTTCAAACGCTTTTCTTGGAACTTCTCGAGATGGGGTATGAAATTTATCACCCATTTCTCTGCTTCTTCATTCATTAATAACATATATATGTTTCTTAAAAGAATACAAGTGTTTTGTTTTTGAAGGTTGTGGTGGAAGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCTGCTCATGTTGATTATATCTACACAGATACCCAGAAGCCATGAGATATATTATTTAATTTTGATCACTTTTGTCCCAATTGTACATTCTCACCAGTTCTTAACAAATAGATTTTCAGGGAAAATTAAAACGAAAATGGTGACAAAAGAGAAGAGACTCTTTTGTAGTTCTCTCTTCATTTTTGGAAAATTTGATGTCATTAATTTTGTTAATTAGTGTAACTAATAATGATTAACTTTGATATTTTAGTATCTTAGTCGTTAGTCAAAAGAAACCAGAGATCTGGAATGGTTTTTTAGGGTCACCGTATCCTAATTTGTGTATCACTATGCAAATTTGTTGTCATTATAATTGCATCAACCTATATGGTAATTATATCTCTAA

mRNA sequence

aatctctctctctctctcatatggcctccaaactcttcacctccatctacccttttctcttcctcttcctcttcttttcctcctcctccaccACCCCCATTGCTGCTCGGCCCGTCCCCGGTTTTTCAAACGCTTTTCTTGGAACTTCTCGAGATGGGGTTGTGGTGGAAGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCTGCTCATGTTGATTATATCTACACAGATACCCAGAAGCCATGAGATATATTATTTAATTTTGATCACTTTTGTCCCAATTGTACATTCTCACCAGTTCTTAACAAATAGATTTTCAGGGAAAATTAAAACGAAAATGGTGACAAAAGAGAAGAGACTCTTTTGTAGTTCTCTCTTCATTTTTGGAAAATTTGATGTCATTAATTTTGTTAATTAGTGTAACTAATAATGATTAACTTTGATATTTTAGTATCTTAGTCGTTAGTCAAAAGAAACCAGAGATCTGGAATGGTTTTTTAGGGTCACCGTATCCTAATTTGTGTATCACTATGCAAATTTGTTGTCATTATAATTGCATCAACCTATATGGTAATTATATCTCTAa

Coding sequence (CDS)

ATGGCCTCCAAACTCTTCACCTCCATCTACCCTTTTCTCTTCCTCTTCCTCTTCTTTTCCTCCTCCTCCACCACCCCCATTGCTGCTCGGCCCGTCCCCGGTTTTTCAAACGCTTTTCTTGGAACTTCTCGAGATGGGGTTGTGGTGGAAGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCTGCTCATGTTGATTATATCTACACAGATACCCAGAAGCCATGA

Protein sequence

MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCDEIGEEYCLMRKTLAAHVDYIYTDTQKP*

Homology

[Close]

BLAST of Cucsa.298460 vs. Swiss-Prot
Match: PSK3_ARATH (Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 1


Query: 6  FTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV--VEDDVLEEESCDEIG 65
          FT+I+    L       ST   AAR  P  + A    SR+  V  +E D +EEESC+ IG
Sbjct: 4  FTTIFIMALLLC-----STLTYAARLTPTTTTAL---SRENSVKEIEGDKVEEESCNGIG 63

Query: 66 EEYCLMRKTLAAHVDYIYTDTQKP 88
          EE CL+R++L  H DYIYT   KP
Sbjct: 64 EEECLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Cucsa.298460 vs. Swiss-Prot
Match: PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-07
Identity = 36/87 (41.38%), Postives = 46/87 (52.87%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60
          M+SK  T     L + L FS S     AARP+          S   V V  + + +E+C+
Sbjct: 1  MSSKAIT----LLLIALLFSLSLAQ--AARPLQP------ADSTKSVHVIPEKVHDEACE 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 88
           +GEE CLMR+TL AHVDYIYT    P
Sbjct: 61 GVGEEECLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of Cucsa.298460 vs. TrEMBL
Match: A0A0A0KY18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.2e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60
          MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          EIGEEYCLMRKTLAAHVDYIYTDTQKP
Sbjct: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of Cucsa.298460 vs. TrEMBL
Match: B9HFY9_POPTR (Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 13 LFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV-VEDDVLEEESCDEIGEEYCLMRK 72
          LFL +     ST   AARP PGF N  L  ++  VV  E   + EESC+ +GEE CLMR+
Sbjct: 9  LFLIVSLLLCSTLTYAARPEPGFPNGSLAKNQQKVVDAEHAEVMEESCEGVGEEECLMRR 68

Query: 73 TLAAHVDYIYTDTQKP 88
          TLAAH DYIYT   KP
Sbjct: 69 TLAAHTDYIYTQKHKP 84

[Close]

BLAST of Cucsa.298460 vs. TrEMBL
Match: I3SCD7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.9e-10
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 4  KLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDV-LEEESCDEI 63
          K+++ +   L L LFF    T   AAR  P  S     +++ GV+ +D V +EEE+C+ I
Sbjct: 2  KMWSKVSAILCLALFFFLFLTLTYAARHDPSSSPIISSSTQHGVLEDDKVEMEEENCEGI 61

Query: 64 GEEYCLMRKTLAAHVDYIYTDTQKP 88
           EE CLMR+TL AH DYIYT  QKP
Sbjct: 62 KEEECLMRRTLVAHTDYIYTQKQKP 86

[Close]

BLAST of Cucsa.298460 vs. TrEMBL
Match: M5VYE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.0e-10
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGV--VVEDDVLEEES 60
          MASKL +  +  L LFL  SSS     AARP+P   +A    ++D +  V  +  + EES
Sbjct: 1  MASKLTSLCFIALILFLSLSSS-----AARPLPSAFDANAMKAQDELKDVEVEKAMVEES 60

Query: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          C+ +GEE CLMR+TLAAH+DYIYT    P
Sbjct: 61 CEGVGEEECLMRRTLAAHIDYIYTQKNNP 84

[Close]

BLAST of Cucsa.298460 vs. TrEMBL
Match: M5WQE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022767mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-09
Identity = 39/73 (53.42%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 16 FLFFSSSSTTPIAARPVPGFSNAFLG-TSRDGVVVEDDVLEEESCDEIGEEYCLMRKTLA 75
          FL     ST   AARP P FS A    T  +GV  E D +  ESC+  GEE CLMR+TLA
Sbjct: 9  FLALLLCSTLVCAARPEPAFSAATSAKTQFEGVETEFDEVVNESCEGAGEEECLMRRTLA 68

Query: 76 AHVDYIYTDTQKP 88
          AHVDYIYT    P
Sbjct: 69 AHVDYIYTQKHNP 81

[Close]

BLAST of Cucsa.298460 vs. TAIR10
Match: AT3G49780.1 (AT3G49780.1 phytosulfokine 4 precursor)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-09
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 1


Query: 6  FTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV--VEDDVLEEESCDEIG 65
          FT+I+    L       ST   AAR  P  + A    SR+  V  +E D +EEESC+ IG
Sbjct: 4  FTTIFIMALLLC-----STLTYAARLTPTTTTAL---SRENSVKEIEGDKVEEESCNGIG 63

Query: 66 EEYCLMRKTLAAHVDYIYTDTQKP 88
          EE CL+R++L  H DYIYT   KP
Sbjct: 64 EEECLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Cucsa.298460 vs. TAIR10
Match: AT4G37720.1 (AT4G37720.1 phytosulfokine 6 precursor)

HSP 1 Score: 47.8 bits (112), Expect = 4.1e-06
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 28 AARPVPGFSNAFLGTSRDGVVVE--DDVLEE---ESCDEIGEEYCLMRKTLAAHVDYIYT 83
          +ARP P +  +F  +  D + +E  +  L E   ESCD+  +E CL+R+TL AH+DYIYT
Sbjct: 22 SARPEPAYFASFTTSPADTLSLEMIESKLHEVAGESCDKEDDEDCLVRRTLTAHLDYIYT 81

[Close]

BLAST of Cucsa.298460 vs. NCBI nr
Match: gi|449465093|ref|XP_004150263.1| (PREDICTED: phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 7.5e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60
          MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          EIGEEYCLMRKTLAAHVDYIYTDTQKP
Sbjct: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of Cucsa.298460 vs. NCBI nr
Match: gi|659108845|ref|XP_008454416.1| (PREDICTED: phytosulfokines-like [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60
          MASKLFTSIYPFLFLFLFFSSSSTTP+AARPVPGFSNAFL TSRDGVV  DDVLEEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPVAARPVPGFSNAFLDTSRDGVV--DDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          EIGE+YCLMRKT+AAHVDYIYTD+QKP
Sbjct: 61 EIGEDYCLMRKTVAAHVDYIYTDSQKP 85

[Close]

BLAST of Cucsa.298460 vs. NCBI nr
Match: gi|224095017|ref|XP_002310329.1| (Phytosulfokines 3 precursor family protein [Populus trichocarpa])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 13 LFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV-VEDDVLEEESCDEIGEEYCLMRK 72
          LFL +     ST   AARP PGF N  L  ++  VV  E   + EESC+ +GEE CLMR+
Sbjct: 9  LFLIVSLLLCSTLTYAARPEPGFPNGSLAKNQQKVVDAEHAEVMEESCEGVGEEECLMRR 68

Query: 73 TLAAHVDYIYTDTQKP 88
          TLAAH DYIYT   KP
Sbjct: 69 TLAAHTDYIYTQKHKP 84

[Close]

BLAST of Cucsa.298460 vs. NCBI nr
Match: gi|743862167|ref|XP_011031319.1| (PREDICTED: phytosulfokines 3-like [Populus euphratica])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 13 LFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV-VEDDVLEEESCDEIGEEYCLMRK 72
          LFL +     ST   AARP PGF N  L  ++  VV  E   + EESC+ +GEE CLMR+
Sbjct: 9  LFLIVSLLLCSTLTYAARPEPGFPNGSLTKNQQKVVDAEHAEVMEESCEGVGEEECLMRR 68

Query: 73 TLAAHVDYIYTDTQKP 88
          TLAAH DYIYT   KP
Sbjct: 69 TLAAHTDYIYTQKHKP 84

[Close]

BLAST of Cucsa.298460 vs. NCBI nr
Match: gi|645261372|ref|XP_008236262.1| (PREDICTED: phytosulfokines-like [Prunus mume])

HSP 1 Score: 71.6 bits (174), Expect = 7.6e-10
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGV--VVEDDVLEEES 60
          MASKL +  +  L LFL  S S     AARP+P  S+A    ++D V  V  +  + EES
Sbjct: 1  MASKLTSLCFIALILFLSLSCS-----AARPLPSASDANAMKAQDEVKDVEVEKAMVEES 60

Query: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          C+ +GEE CLMR+TLAAH+DYIYT    P
Sbjct: 61 CEGVGEEECLMRRTLAAHIDYIYTRKHNP 84

The following BLAST results are available for this feature:

BLAST of Cucsa.298460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSK3_ARATH	1.9e-08	44.05	Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2	[more]
PSK_ASPOF	4.6e-07	41.38	Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1	[more]

BLAST of Cucsa.298460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY18_CUCSA	5.2e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1	[more]
B9HFY9_POPTR	6.2e-11	52.63	Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=...	[more]
I3SCD7_LOTJA	6.9e-10	45.88	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
M5VYE0_PRUPE	9.0e-10	47.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1	[more]
M5WQE6_PRUPE	4.5e-09	53.42	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022767mg PE=4 SV=1	[more]

BLAST of Cucsa.298460 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49780.1	1.0e-09	44.05	phytosulfokine 4 precursor	[more]
AT4G37720.1	4.1e-06	43.33	phytosulfokine 6 precursor	[more]

BLAST of Cucsa.298460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465093\|ref\|XP_004150263.1\|	7.5e-42	100.00	PREDICTED: phytosulfokines 3 [Cucumis sativus]	[more]
gi\|659108845\|ref\|XP_008454416.1\|	3.3e-37	91.95	PREDICTED: phytosulfokines-like [Cucumis melo]	[more]
gi\|224095017\|ref\|XP_002310329.1\|	8.9e-11	52.63	Phytosulfokines 3 precursor family protein [Populus trichocarpa]	[more]
gi\|743862167\|ref\|XP_011031319.1\|	1.5e-10	52.63	PREDICTED: phytosulfokines 3-like [Populus euphratica]	[more]
gi\|645261372\|ref\|XP_008236262.1\|	7.6e-10	48.31	PREDICTED: phytosulfokines-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009438	Phytosulfokine

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008283	cell proliferation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.298460.1	Cucsa.298460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 51..86 score: 2.7
None	No IPR available	PANTHER	PTHR33285	FAMILY NOT NAMED	coord: 8..87 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.298460	Cla006452	Watermelon (97103) v1	cgywmB541
Cucsa.298460	Csa4G000620	Cucumber (Chinese Long) v2	cgycuB423
Cucsa.298460	ClCG10G010060	Watermelon (Charleston Gray)	cgywcgB513
Cucsa.298460	CSPI04G00130	Wild cucumber (PI 183967)	cgycpiB447
Cucsa.298460	CmaCh16G003080	Cucurbita maxima (Rimu)	cgycmaB0824
Cucsa.298460	CmaCh04G004360	Cucurbita maxima (Rimu)	cgycmaB0825
Cucsa.298460	CmoCh04G004660	Cucurbita moschata (Rifu)	cgycmoB0819
Cucsa.298460	CmoCh16G003270	Cucurbita moschata (Rifu)	cgycmoB0818
Cucsa.298460	Cp4.1LG14g04590	Cucurbita pepo (Zucchini)	cgycpeB0780
Cucsa.298460	MELO3C032871.2	Melon (DHL92) v3.6.1	cgymedB489
Cucsa.298460	CsaV3_4G000100	Cucumber (Chinese Long) v3	cgycucB460
Cucsa.298460	Bhi11G000915	Wax gourd	cgywgoB597
Cucsa.298460	Carg19698	Silver-seed gourd	carcgyB0346

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.298460	Cucurbita pepo (Zucchini)	cgycpeB0781
Cucsa.298460	Bottle gourd (USVL1VR-Ls)	cgylsiB481
Cucsa.298460	Silver-seed gourd	carcgyB0439
Cucsa.298460	Watermelon (97103) v2	cgywmbB514
Cucsa.298460	Melon (DHL92) v3.5.1	cgymeB490