Csa4G000620 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G000620
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR009438 (Phytosulfokine)
Location	Chr4 : 86051 .. 86741 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCAAACTCTTCACCTCCATCTACCCTTTTCTCTTCCTCTTCCTCTTCTTTTCCTCCTCCTCCACCACCCCCATTGCTGCTCGGCCCGTCCCCGGTTTTTCAAACGCTTTTCTTGGAACTTCTCGAGATGGGGTATGAAATTTATCACCCATTTCTCTGCTTCTTCATTCATTAATAACATATATATGTTTCTTAAAAGAATACAAGTGTTTTGTTTTTGAAGGTTGTGGTGGAAGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCTGCTCATGTTGATTATATCTACACAGATACCCAGAAGCCATGAGATATATTATTTAATTTTGATCACTTTTGTCCCAATTGTACATTCTCACCAGTTCTTAACAAATAGATTTTCAGGGAAAATTAAAACGAAAATGGTGACAAAAGAGAAGAGATTCTTTTGTAGTTCTCTCTTCATTTTTGGAAAATTTGATGTCATTAATTTTGTTAATTAGTGTAACTAATAATGATTAACTTTGATATTTTAGTATCTTAGTCGTTAGTCAAAAGAAACCAGAGATCTGGAATGGTTTTTTAGGGTCACCGTATCCTAATTTGTGTATCACTATGCAAATTTGTTGTCATTATAATTGCATCAACCTATATGGTAATTATATCT

mRNA sequence

ATGGCCTCCAAACTCTTCACCTCCATCTACCCTTTTCTCTTCCTCTTCCTCTTCTTTTCCTCCTCCTCCACCACCCCCATTGCTGCTCGGCCCGTCCCCGGTTTTTCAAACGCTTTTCTTGGAACTTCTCGAGATGGGGTTGTGGTGGAAGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCTGCTCATGTTGATTATATCTACACAGATACCCAGAAGCCATGA

Coding sequence (CDS)

ATGGCCTCCAAACTCTTCACCTCCATCTACCCTTTTCTCTTCCTCTTCCTCTTCTTTTCCTCCTCCTCCACCACCCCCATTGCTGCTCGGCCCGTCCCCGGTTTTTCAAACGCTTTTCTTGGAACTTCTCGAGATGGGGTTGTGGTGGAAGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCTGCTCATGTTGATTATATCTACACAGATACCCAGAAGCCATGA

Protein sequence

MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCDEIGEEYCLMRKTLAAHVDYIYTDTQKP*

Homology

[Close]

BLAST of Csa4G000620 vs. Swiss-Prot
Match: PSK3_ARATH (Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08
Identity = 37/84 (44.05%), Postives = 45/84 (53.57%), Query Frame = 1


Query: 6  FTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV--VEDDVLEEESCDEIG 65
          FT+I+    L       ST   AAR  P  + A    SR+  V  +E D +EEESC+ IG
Sbjct: 4  FTTIFIMALLLC-----STLTYAARLTPTTTTAL---SRENSVKEIEGDKVEEESCNGIG 63

Query: 66 EEYCLMRKTLAAHVDYIYTDTQKP 88
          EE CL+R++L  H DYIYT   KP
Sbjct: 64 EEECLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Csa4G000620 vs. Swiss-Prot
Match: PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-07
Identity = 36/87 (41.38%), Postives = 44/87 (50.57%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60
          M+SK  T     L + L FS S     AARP+          S   V V  + + +E+C+
Sbjct: 1  MSSKAIT----LLLIALLFSLSLAQ--AARPLQP------ADSTKSVHVIPEKVHDEACE 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 88
           +GEE CLMR+TL AHVDYIYT    P
Sbjct: 61 GVGEEECLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of Csa4G000620 vs. TrEMBL
Match: A0A0A0KY18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.2e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60
          MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          EIGEEYCLMRKTLAAHVDYIYTDTQKP
Sbjct: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of Csa4G000620 vs. TrEMBL
Match: B9HFY9_POPTR (Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 13 LFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV-VEDDVLEEESCDEIGEEYCLMRK 72
          LFL +     ST   AARP PGF N  L  ++  VV  E   + EESC+ +GEE CLMR+
Sbjct: 9  LFLIVSLLLCSTLTYAARPEPGFPNGSLAKNQQKVVDAEHAEVMEESCEGVGEEECLMRR 68

Query: 73 TLAAHVDYIYTDTQKP 88
          TLAAH DYIYT   KP
Sbjct: 69 TLAAHTDYIYTQKHKP 84

[Close]

BLAST of Csa4G000620 vs. TrEMBL
Match: I3SCD7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.9e-10
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 4  KLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDV-LEEESCDEI 63
          K+++ +   L L LFF    T   AAR  P  S     +++ GV+ +D V +EEE+C+ I
Sbjct: 2  KMWSKVSAILCLALFFFLFLTLTYAARHDPSSSPIISSSTQHGVLEDDKVEMEEENCEGI 61

Query: 64 GEEYCLMRKTLAAHVDYIYTDTQKP 88
           EE CLMR+TL AH DYIYT  QKP
Sbjct: 62 KEEECLMRRTLVAHTDYIYTQKQKP 86

[Close]

BLAST of Csa4G000620 vs. TrEMBL
Match: M5VYE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.0e-10
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGV--VVEDDVLEEES 60
          MASKL +  +  L LFL  SSS     AARP+P   +A    ++D +  V  +  + EES
Sbjct: 1  MASKLTSLCFIALILFLSLSSS-----AARPLPSAFDANAMKAQDELKDVEVEKAMVEES 60

Query: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          C+ +GEE CLMR+TLAAH+DYIYT    P
Sbjct: 61 CEGVGEEECLMRRTLAAHIDYIYTQKNNP 84

[Close]

BLAST of Csa4G000620 vs. TrEMBL
Match: M5WQE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022767mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-09
Identity = 39/73 (53.42%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 16 FLFFSSSSTTPIAARPVPGFSNAFLG-TSRDGVVVEDDVLEEESCDEIGEEYCLMRKTLA 75
          FL     ST   AARP P FS A    T  +GV  E D +  ESC+  GEE CLMR+TLA
Sbjct: 9  FLALLLCSTLVCAARPEPAFSAATSAKTQFEGVETEFDEVVNESCEGAGEEECLMRRTLA 68

Query: 76 AHVDYIYTDTQKP 88
          AHVDYIYT    P
Sbjct: 69 AHVDYIYTQKHNP 81

[Close]

BLAST of Csa4G000620 vs. TAIR10
Match: AT3G49780.1 (AT3G49780.1 phytosulfokine 4 precursor)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-09
Identity = 37/84 (44.05%), Postives = 45/84 (53.57%), Query Frame = 1


Query: 6  FTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV--VEDDVLEEESCDEIG 65
          FT+I+    L       ST   AAR  P  + A    SR+  V  +E D +EEESC+ IG
Sbjct: 4  FTTIFIMALLLC-----STLTYAARLTPTTTTAL---SRENSVKEIEGDKVEEESCNGIG 63

Query: 66 EEYCLMRKTLAAHVDYIYTDTQKP 88
          EE CL+R++L  H DYIYT   KP
Sbjct: 64 EEECLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Csa4G000620 vs. TAIR10
Match: AT4G37720.1 (AT4G37720.1 phytosulfokine 6 precursor)

HSP 1 Score: 47.8 bits (112), Expect = 4.1e-06
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 28 AARPVPGFSNAFLGTSRDGVVVE--DDVLEE---ESCDEIGEEYCLMRKTLAAHVDYIYT 83
          +ARP P +  +F  +  D + +E  +  L E   ESCD+  +E CL+R+TL AH+DYIYT
Sbjct: 22 SARPEPAYFASFTTSPADTLSLEMIESKLHEVAGESCDKEDDEDCLVRRTLTAHLDYIYT 81

[Close]

BLAST of Csa4G000620 vs. NCBI nr
Match: gi|449465093|ref|XP_004150263.1| (PREDICTED: phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 7.5e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60
          MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          EIGEEYCLMRKTLAAHVDYIYTDTQKP
Sbjct: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of Csa4G000620 vs. NCBI nr
Match: gi|659108845|ref|XP_008454416.1| (PREDICTED: phytosulfokines-like [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60
          MASKLFTSIYPFLFLFLFFSSSSTTP+AARPVPGFSNAFL TSRDGVV  DDVLEEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPVAARPVPGFSNAFLDTSRDGVV--DDVLEEESCD 60

Query: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          EIGE+YCLMRKT+AAHVDYIYTD+QKP
Sbjct: 61 EIGEDYCLMRKTVAAHVDYIYTDSQKP 85

[Close]

BLAST of Csa4G000620 vs. NCBI nr
Match: gi|224095017|ref|XP_002310329.1| (Phytosulfokines 3 precursor family protein [Populus trichocarpa])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 13 LFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV-VEDDVLEEESCDEIGEEYCLMRK 72
          LFL +     ST   AARP PGF N  L  ++  VV  E   + EESC+ +GEE CLMR+
Sbjct: 9  LFLIVSLLLCSTLTYAARPEPGFPNGSLAKNQQKVVDAEHAEVMEESCEGVGEEECLMRR 68

Query: 73 TLAAHVDYIYTDTQKP 88
          TLAAH DYIYT   KP
Sbjct: 69 TLAAHTDYIYTQKHKP 84

[Close]

BLAST of Csa4G000620 vs. NCBI nr
Match: gi|743862167|ref|XP_011031319.1| (PREDICTED: phytosulfokines 3-like [Populus euphratica])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 13 LFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVV-VEDDVLEEESCDEIGEEYCLMRK 72
          LFL +     ST   AARP PGF N  L  ++  VV  E   + EESC+ +GEE CLMR+
Sbjct: 9  LFLIVSLLLCSTLTYAARPEPGFPNGSLTKNQQKVVDAEHAEVMEESCEGVGEEECLMRR 68

Query: 73 TLAAHVDYIYTDTQKP 88
          TLAAH DYIYT   KP
Sbjct: 69 TLAAHTDYIYTQKHKP 84

[Close]

BLAST of Csa4G000620 vs. NCBI nr
Match: gi|645261372|ref|XP_008236262.1| (PREDICTED: phytosulfokines-like [Prunus mume])

HSP 1 Score: 71.6 bits (174), Expect = 7.6e-10
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGV--VVEDDVLEEES 60
          MASKL +  +  L LFL  S S     AARP+P  S+A    ++D V  V  +  + EES
Sbjct: 1  MASKLTSLCFIALILFLSLSCS-----AARPLPSASDANAMKAQDEVKDVEVEKAMVEES 60

Query: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQKP 88
          C+ +GEE CLMR+TLAAH+DYIYT    P
Sbjct: 61 CEGVGEEECLMRRTLAAHIDYIYTRKHNP 84

The following BLAST results are available for this feature:

BLAST of Csa4G000620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSK3_ARATH	1.9e-08	44.05	Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2	[more]
PSK_ASPOF	4.6e-07	41.38	Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1	[more]

BLAST of Csa4G000620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY18_CUCSA	5.2e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1	[more]
B9HFY9_POPTR	6.2e-11	52.63	Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=...	[more]
I3SCD7_LOTJA	6.9e-10	45.88	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
M5VYE0_PRUPE	9.0e-10	47.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1	[more]
M5WQE6_PRUPE	4.5e-09	53.42	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022767mg PE=4 SV=1	[more]

BLAST of Csa4G000620 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49780.1	1.0e-09	44.05	phytosulfokine 4 precursor	[more]
AT4G37720.1	4.1e-06	43.33	phytosulfokine 6 precursor	[more]

BLAST of Csa4G000620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465093\|ref\|XP_004150263.1\|	7.5e-42	100.00	PREDICTED: phytosulfokines 3 [Cucumis sativus]	[more]
gi\|659108845\|ref\|XP_008454416.1\|	3.3e-37	91.95	PREDICTED: phytosulfokines-like [Cucumis melo]	[more]
gi\|224095017\|ref\|XP_002310329.1\|	8.9e-11	52.63	Phytosulfokines 3 precursor family protein [Populus trichocarpa]	[more]
gi\|743862167\|ref\|XP_011031319.1\|	1.5e-10	52.63	PREDICTED: phytosulfokines 3-like [Populus euphratica]	[more]
gi\|645261372\|ref\|XP_008236262.1\|	7.6e-10	48.31	PREDICTED: phytosulfokines-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009438	Phytosulfokine

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008283	cell proliferation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008083	growth factor activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU178018	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G000620.1	Csa4G000620.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU178018	CU178018	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 51..86 score: 2.7
None	No IPR available	PANTHER	PTHR33285	FAMILY NOT NAMED	coord: 8..87 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G000620	Cla006452	Watermelon (97103) v1	cuwmB290
Csa4G000620	ClCG10G010060	Watermelon (Charleston Gray)	cuwcgB271
Csa4G000620	MELO3C032871.2	Melon (DHL92) v3.6.1	cumedB297
Csa4G000620	CSPI04G00130	Wild cucumber (PI 183967)	cpicuB182
Csa4G000620	Cucsa.298460	Cucumber (Gy14) v1	cgycuB423
Csa4G000620	CmaCh16G003080	Cucurbita maxima (Rimu)	cmacuB333
Csa4G000620	CmaCh04G004360	Cucurbita maxima (Rimu)	cmacuB709
Csa4G000620	CmoCh16G003270	Cucurbita moschata (Rifu)	cmocuB322
Csa4G000620	CmoCh04G004660	Cucurbita moschata (Rifu)	cmocuB701
Csa4G000620	Cp4.1LG14g04590	Cucurbita pepo (Zucchini)	cpecuB219
Csa4G000620	CsGy4G000140	Cucumber (Gy14) v2	cgybcuB165
Csa4G000620	Carg19698	Silver-seed gourd	carcuB0322

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G000620	Cucurbita pepo (Zucchini)	cpecuB402
Csa4G000620	Bottle gourd (USVL1VR-Ls)	culsiB275
Csa4G000620	Cucumber (Gy14) v2	cgybcuB176
Csa4G000620	Silver-seed gourd	carcuB0402
Csa4G000620	Watermelon (97103) v2	cuwmbB271
Csa4G000620	Watermelon (97103) v2	cuwmbB289
Csa4G000620	Wax gourd	cuwgoB356
Csa4G000620	Cucumber (Chinese Long) v2	cucuB135
Csa4G000620	Cucumber (Chinese Long) v2	cucuB152
Csa4G000620	Cucumber (Gy14) v1	cgycuB495
Csa4G000620	Melon (DHL92) v3.5.1	cumeB312