Carg19698 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19698
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	phytosulfokines 3-like
Location	Cucurbita_argyrosperma_scaffold_133 : 221070 .. 221440 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCAGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGGTACGTAAATTTATCAGCAATTGCTCTTGTTAATATGTCTTTCTATAAAGAAAGAAAATTGTAGTGAATATTGTGTGCTTTTTTTCCTTCTTTTTGGGAAGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGA

mRNA sequence

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCAGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGA

Coding sequence (CDS)

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCAGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGA

Protein sequence

MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESCEEIGEEYCLMRKTLAAHADYIYTDSQRKP

Homology

[Close]

BLAST of Carg19698 vs. NCBI nr
Match: XP_022922962.1 (phytosulfokines-like [Cucurbita moschata])

HSP 1 Score: 175.3 bits (443), Expect = 9.6e-41
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          MASKLLTSIFTFLFLFFSFVSSATTIGA+PVPVPGFSNAFPGTSRDGLKAGDDALEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYTDSQRKP 90
          EEIGEEYCLMRKTLAAHADYIYTDSQRKP
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89

[Close]

BLAST of Carg19698 vs. NCBI nr
Match: XP_022984884.1 (phytosulfokines-like [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 8.9e-39
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1   MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
           MA KLLTSIFTFLFLFFSFVSS TTIGA+PVPVPGFSNAFPGTSRD LKAGDDALEEESC
Sbjct: 37  MAPKLLTSIFTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELKAGDDALEEESC 96

Query: 61  EEIGEEYCLMRKTLAAHADYIYTDSQRKP 90
           EEIGEEYCLMRKTLAAHADYIYTDSQRKP
Sbjct: 97  EEIGEEYCLMRKTLAAHADYIYTDSQRKP 125

[Close]

BLAST of Carg19698 vs. NCBI nr
Match: XP_004150263.1 (PREDICTED: phytosulfokines 3 [Cucumis sativus] >KGN52741.1 hypothetical protein Csa_4G000620 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FL          TT I A+  PVPGFSNAF GTSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLXXXXXXXXXXTTPIAAR--PVPGFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 88
          C+EIGEEYCLMRKTLAAH DYIYTD+Q+
Sbjct: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQK 86

[Close]

BLAST of Carg19698 vs. NCBI nr
Match: XP_022941982.1 (phytosulfokines-like [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 5.6e-17
Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          MASKL+TSIF           S T++ A+  P+PG +N  PGT+RDG K  DD LEEESC
Sbjct: 1  MASKLVTSIFXXXXXXXXXXXSTTSVFAR--PIPGSTNMSPGTTRDGFKVVDDVLEEESC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYTDSQR 88
            IGEE+CLMRKTLAAHADYIYTD QR
Sbjct: 61 -GIGEEHCLMRKTLAAHADYIYTDKQR 84

[Close]

BLAST of Carg19698 vs. NCBI nr
Match: XP_022149343.1 (phytosulfokines-like [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 8.1e-16
Identity = 51/86 (59.30%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          MASKLLT+                 I     PVP F NAFP T+R GLK  DD LEEESC
Sbjct: 1  MASKLLTTFXXXXXXXXXXXXXXXAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYTDSQ 87
            IGEEYCLMRKTLAAH DYIYTD+Q
Sbjct: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQ 86

[Close]

BLAST of Carg19698 vs. TAIR10
Match: AT3G49780.1 (phytosulfokine 4 precursor)

HSP 1 Score: 47.4 bits (111), Expect = 5.5e-06
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 10 FTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESCEEIGEEYCL 69
          FT +F+    + S  T  A+  P    + +   + ++      D +EEESC  IGEE CL
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTTTALSRENSVKE---IEGDKVEEESCNGIGEEECL 63

Query: 70 MRKTLAAHADYIYTDSQR 88
          +R++L  H DYIYT + +
Sbjct: 64 IRRSLVLHTDYIYTQNHK 78

[Close]

BLAST of Carg19698 vs. TAIR10
Match: AT4G37720.1 (phytosulfokine 6 precursor)

HSP 1 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 25/66 (37.88%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 23 ATTIGAQPVPVPGFSNAFPGTSRD--GLKAGDDALEE---ESCEEIGEEYCLMRKTLAAH 82
          AT +     P P +  +F  +  D   L+  +  L E   ESC++  +E CL+R+TL AH
Sbjct: 16 ATMLTCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGESCDKEDDEDCLVRRTLTAH 75

Query: 83 ADYIYT 84
           DYIYT
Sbjct: 76 LDYIYT 81

[Close]

BLAST of Carg19698 vs. TAIR10
Match: AT2G22860.1 (phytosulfokine 2 precursor)

HSP 1 Score: 40.4 bits (93), Expect = 6.7e-04
Identity = 19/41 (46.34%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 49 KAGDDALEEESCEEIGEEYCLMRKTLAAHADYIYTDSQRKP 90
          K  D  + +E+C    +E CLMR+TL AH DYIYT  ++ P
Sbjct: 48 KLDDMHMVDENC-GADDEDCLMRRTLVAHTDYIYTQKKKHP 87

[Close]

BLAST of Carg19698 vs. Swiss-Prot
Match: sp|Q9M2Y0|PSK3_ARATH (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-05
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 10 FTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESCEEIGEEYCL 69
          FT +F+    + S  T  A+  P    + +   + ++      D +EEESC  IGEE CL
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTTTALSRENSVKE---IEGDKVEEESCNGIGEEECL 63

Query: 70 MRKTLAAHADYIYTDSQR 88
          +R++L  H DYIYT + +
Sbjct: 64 IRRSLVLHTDYIYTQNHK 78

[Close]

BLAST of Carg19698 vs. Swiss-Prot
Match: sp|Q9FS10|PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-04
Identity = 28/83 (33.73%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          M+SK +T +   L    S   +A  +              P  S   +    + + +E+C
Sbjct: 1  MSSKAITLLLIALLFSLSLAQAARPLQ-------------PADSTKSVHVIPEKVHDEAC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYT 84
          E +GEE CLMR+TL AH DYIYT
Sbjct: 61 EGVGEEECLMRRTLTAHVDYIYT 70

[Close]

BLAST of Carg19698 vs. TrEMBL
Match: tr|A0A0A0KY18|A0A0A0KY18_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FL          TT I A+  PVPGFSNAF GTSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLXXXXXXXXXXTTPIAAR--PVPGFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 88
          C+EIGEEYCLMRKTLAAH DYIYTD+Q+
Sbjct: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQK 86

[Close]

BLAST of Carg19698 vs. TrEMBL
Match: tr|M5VYE0|M5VYE0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G150200 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLK--AGDDALEEE 60
          MASKL +  F  L LF S  SSA    A+P+P    +NA    ++D LK    + A+ EE
Sbjct: 1  MASKLTSLCFIALILFLSLSSSA----ARPLPSAFDANAM--KAQDELKDVEVEKAMVEE 60

Query: 61 SCEEIGEEYCLMRKTLAAHADYIYT 84
          SCE +GEE CLMR+TLAAH DYIYT
Sbjct: 61 SCEGVGEEECLMRRTLAAHIDYIYT 79

[Close]

BLAST of Carg19698 vs. TrEMBL
Match: tr|A0A2P5FS83|A0A2P5FS83_9ROSA (Phytosulfokine OS=Trema orientalis OX=63057 GN=TorRG33x02_032990 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDG-LKAGDDALEEES 60
          MA   + ++F    LF S ++ A        P PGFS   P  ++ G ++A    + +ES
Sbjct: 1  MAKNAIRALFLMALLFCSTLAYAAR------PEPGFSATVPAQTQHGVVEAEQVEVGDES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 88
          CE +GEE CLMR+TLAAH DYIYT   +
Sbjct: 61 CEGVGEEECLMRRTLAAHTDYIYTQKHK 82

[Close]

BLAST of Carg19698 vs. TrEMBL
Match: tr|A0A2I4E2D1|A0A2I4E2D1_9ROSI (phytosulfokines 3-like OS=Juglans regia OX=51240 GN=LOC108985637 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 15 LFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDD----ALEEESCEEIGEEYCLM 74
          L  + +  ++T+     P PGF++A P  +  G  A  D    A++E SCE +GEE CL 
Sbjct: 9  LMIALLLCSSTLTYASRPEPGFADATPANTHHGDFAEADQHVHAVDESSCEGLGEEECLE 68

Query: 75 RKTLAAHADYIYTDSQR 88
          R+TLAAH DYIYT  Q+
Sbjct: 69 RRTLAAHLDYIYTQKQK 85

[Close]

BLAST of Carg19698 vs. TrEMBL
Match: tr|A0A2P5AVK8|A0A2P5AVK8_PARAD (Phytosulfokine OS=Parasponia andersonii OX=3476 GN=PanWU01x14_296470 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPV-PGFSNAFPGTSRDG---LKAGDDALE 60
          M+SK++T+    L L   F   + T  A+  PV     N  P T + G   +   +D + 
Sbjct: 1  MSSKVITATLFVLSLLLFF---SVTCRARAGPVFSNSDNRNPTTDKVGHGSINEAEDVMV 60

Query: 61 EESCEEIGEEYCLMRKTLAAHADYIYTDSQR 88
          EESCE +GEE CLMR+TLAAH DYIYT  Q+
Sbjct: 61 EESCEGVGEEECLMRRTLAAHTDYIYTQKQK 88

The following BLAST results are available for this feature:

BLAST of Carg19698 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922962.1	9.6e-41	98.88	phytosulfokines-like [Cucurbita moschata]	[more]
XP_022984884.1	8.9e-39	95.51	phytosulfokines-like [Cucurbita maxima]	[more]
XP_004150263.1	1.9e-20	68.18	PREDICTED: phytosulfokines 3 [Cucumis sativus] >KGN52741.1 hypothetical protein ...	[more]
XP_022941982.1	5.6e-17	62.07	phytosulfokines-like [Cucurbita moschata]	[more]
XP_022149343.1	8.1e-16	59.30	phytosulfokines-like [Momordica charantia]	[more]

BLAST of Carg19698 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49780.1	5.5e-06	34.62	phytosulfokine 4 precursor	[more]
AT4G37720.1	2.3e-04	37.88	phytosulfokine 6 precursor	[more]
AT2G22860.1	6.7e-04	46.34	phytosulfokine 2 precursor	[more]

BLAST of Carg19698 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2Y0\|PSK3_ARATH	9.8e-05	34.62	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
sp\|Q9FS10\|PSK_ASPOF	3.7e-04	33.73	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]

BLAST of Carg19698 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KY18\|A0A0A0KY18_CUCSA	1.2e-20	68.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=4 SV=1	[more]
tr\|M5VYE0\|M5VYE0_PRUPE	1.2e-07	51.76	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G150200 PE=4 SV=1	[more]
tr\|A0A2P5FS83\|A0A2P5FS83_9ROSA	2.3e-06	40.91	Phytosulfokine OS=Trema orientalis OX=63057 GN=TorRG33x02_032990 PE=4 SV=1	[more]
tr\|A0A2I4E2D1\|A0A2I4E2D1_9ROSI	2.3e-06	42.86	phytosulfokines 3-like OS=Juglans regia OX=51240 GN=LOC108985637 PE=4 SV=1	[more]
tr\|A0A2P5AVK8\|A0A2P5AVK8_PARAD	2.3e-06	42.86	Phytosulfokine OS=Parasponia andersonii OX=3476 GN=PanWU01x14_296470 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Biological Process**
Term	Definition
GO:0008283	cell proliferation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009438	Phytosulfokine

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19698-RA	Carg19698-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 52..87 e-value: 4.5E-10 score: 40.3
IPR009438	Phytosulfokine	PANTHER	PTHR33285	FAMILY NOT NAMED	coord: 1..86
None	No IPR available	PANTHER	PTHR33285:SF14	SUBFAMILY NOT NAMED	coord: 1..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19698	Cla006452	Watermelon (97103) v1	carwmB0287
Carg19698	Csa4G000620	Cucumber (Chinese Long) v2	carcuB0322
Carg19698	ClCG10G010060	Watermelon (Charleston Gray)	carwcgB0287
Carg19698	CSPI04G00130	Wild cucumber (PI 183967)	carcpiB0328
Carg19698	Cucsa.298460	Cucumber (Gy14) v1	carcgyB0346
Carg19698	CmaCh04G004360	Cucurbita maxima (Rimu)	carcmaB0408
Carg19698	CmaCh16G003080	Cucurbita maxima (Rimu)	carcmaB0406
Carg19698	CmoCh16G003270	Cucurbita moschata (Rifu)	carcmoB0402
Carg19698	CmoCh04G004660	Cucurbita moschata (Rifu)	carcmoB0403
Carg19698	Cp4.1LG14g04590	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19698	CsGy4G000140	Cucumber (Gy14) v2	carcgybB0309
Carg19698	MELO3C032871.2	Melon (DHL92) v3.6.1	carmedB0308
Carg19698	Bhi11G000915	Wax gourd	carwgoB0381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19698	Cucumber (Gy14) v1	carcgyB0344
Carg19698	Cucurbita maxima (Rimu)	carcmaB0405
Carg19698	Cucurbita maxima (Rimu)	carcmaB0407
Carg19698	Cucurbita moschata (Rifu)	carcmoB0401
Carg19698	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19698	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19698	Wild cucumber (PI 183967)	carcpiB0329
Carg19698	Cucumber (Chinese Long) v2	carcuB0323
Carg19698	Cucumber (Chinese Long) v3	carcucB0328
Carg19698	Cucumber (Chinese Long) v3	carcucB0329
Carg19698	Bottle gourd (USVL1VR-Ls)	carlsiB269
Carg19698	Melon (DHL92) v3.5.1	carmeB0295
Carg19698	Melon (DHL92) v3.5.1	carmeB0297
Carg19698	Melon (DHL92) v3.6.1	carmedB0306
Carg19698	Watermelon (Charleston Gray)	carwcgB0288
Carg19698	Watermelon (97103) v2	carwmbB0303
Carg19698	Watermelon (97103) v2	carwmbB0302
Carg19698	Silver-seed gourd	carcarB324