CmaCh16G003080 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G003080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 1432597 .. 1433362 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATAAAATCCATGCTGGTTACTTTTGGCTTGAAGTTCCAATTTTGCCCTTCCACAATCCCTTTATATTCATTTCCAGTCCTTCTTCTTCCCCATTTCTCTCATATGGCTCCCAAACTCTTAACCTCCATCTTCACATTTCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGTAACCACCATTGGCGCTCGGCCTGTGCCTGTGCCTGGCTTTTCAAACGCTTTTCCCGGGACTTCTCGAGACGAGGTACGTAAATTTATCAGCAATTTCTCTTGTTAATATCTGTTTCTAGAAAGAAAGGAAGTTGTAGTAATATTGTGTGTTCTTTTCATTCTTTTTGGGAAGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGAGATTATTTACATAGAATTAGTGACAAAAGGAAGAGATTCTTCTGTAAGTTTGGGAAATTATATTAGTGTAATTATGTTTAATTTTTGACTAATTGTTAACTTTTATATAATCCAGGTTAAAGGAACTAGATTTACTAAGTTTCTTCGGGTCACGATATCATAATTATGTATCATAATTTGATTAGCCTAAAGTAATCATTTCTAAGTATTCACATTACCTATCATGGATTGAAAATCTTTCGGTATGTCGAGAGGACATTAATATTTGATCGTATAATCAGATGTATAT

mRNA sequence

ATGAGTATAAAATCCATGCTGGTTACTTTTGGCTTGAAGTTCCAATTTTGCCCTTCCACAATCCCTTTATATTCATTTCCAGTCCTTCTTCTTCCCCATTTCTCTCATATGGCTCCCAAACTCTTAACCTCCATCTTCACATTTCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGTAACCACCATTGGCGCTCGGCCTGTGCCTGTGCCTGGCTTTTCAAACGCTTTTCCCGGGACTTCTCGAGACGAGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGAGATTATTTACATAGAATTAGTGACAAAAGGAAGAGATTCTTCTGTAAGTTTGGGAAATTATATTAGTGTAATTATGTTTAATTTTTGACTAATTGTTAACTTTTATATAATCCAGGTTAAAGGAACTAGATTTACTAAGTTTCTTCGGGTCACGATATCATAATTATGTATCATAATTTGATTAGCCTAAAGTAATCATTTCTAAGTATTCACATTACCTATCATGGATTGAAAATCTTTCGGTATGTCGAGAGGACATTAATATTTGATCGTATAATCAGATGTATAT

Coding sequence (CDS)

ATGAGTATAAAATCCATGCTGGTTACTTTTGGCTTGAAGTTCCAATTTTGCCCTTCCACAATCCCTTTATATTCATTTCCAGTCCTTCTTCTTCCCCATTTCTCTCATATGGCTCCCAAACTCTTAACCTCCATCTTCACATTTCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGTAACCACCATTGGCGCTCGGCCTGTGCCTGTGCCTGGCTTTTCAAACGCTTTTCCCGGGACTTCTCGAGACGAGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGA

Protein sequence

MSIKSMLVTFGLKFQFCPSTIPLYSFPVLLLPHFSHMAPKLLTSIFTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELKAGDDALEEESCEEIGEEYCLMRKTLAAHADYIYTDSQRKP

Homology

[Close]

BLAST of CmaCh16G003080 vs. TrEMBL
Match: A0A0A0KY18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.0e-24
Identity = 65/88 (73.86%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 37  MAPKLLTSIFTFLFLFFSFVSSVTT-IGARPVPVPGFSNAFPGTSRDELKAGDDALEEES 96
           MA KL TSI+ FLFLF  F SS TT I ARPVP  GFSNAF GTSRD +   DD LEEES
Sbjct: 1   MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVP--GFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 97  CEEIGEEYCLMRKTLAAHADYIYTDSQR 124
           C+EIGEEYCLMRKTLAAH DYIYTD+Q+
Sbjct: 61  CDEIGEEYCLMRKTLAAHVDYIYTDTQK 86

[Close]

BLAST of CmaCh16G003080 vs. TrEMBL
Match: M5VYE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-08
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 37  MAPKLLTSIFTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELK--AGDDALEEE 96
           MA KL +  F  L LF S  SS     ARP+P    +NA    ++DELK    + A+ EE
Sbjct: 1   MASKLTSLCFIALILFLSLSSSA----ARPLPSAFDANAMK--AQDELKDVEVEKAMVEE 60

Query: 97  SCEEIGEEYCLMRKTLAAHADYIYT 120
           SCE +GEE CLMR+TLAAH DYIYT
Sbjct: 61  SCEGVGEEECLMRRTLAAHIDYIYT 79

[Close]

BLAST of CmaCh16G003080 vs. TrEMBL
Match: B9HFY9_POPTR (Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 47  TFLFLFFSFV-SSVTTIGARPVPVPGFSNAFPGTSRDELKAGDDA-LEEESCEEIGEEYC 106
           T LFL  S +  S  T  ARP P  GF N     ++ ++   + A + EESCE +GEE C
Sbjct: 7   TTLFLIVSLLLCSTLTYAARPEP--GFPNGSLAKNQQKVVDAEHAEVMEESCEGVGEEEC 66

Query: 107 LMRKTLAAHADYIYTDSQR 124
           LMR+TLAAH DYIYT   +
Sbjct: 67  LMRRTLAAHTDYIYTQKHK 83

[Close]

BLAST of CmaCh16G003080 vs. TAIR10
Match: AT3G49780.1 (AT3G49780.1 phytosulfokine 4 precursor)

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-06
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 1


Query: 46  FTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELKAGDDALEEESCEEIGEEYCL 105
           FT +F+    + S  T  AR  P    + +   + ++      D +EEESC  IGEE CL
Sbjct: 4   FTTIFIMALLLCSTLTYAARLTPTTTTALSRENSVKE---IEGDKVEEESCNGIGEEECL 63

Query: 106 MRKTLAAHADYIYTDSQR 124
           +R++L  H DYIYT + +
Sbjct: 64  IRRSLVLHTDYIYTQNHK 78

[Close]

BLAST of CmaCh16G003080 vs. NCBI nr
Match: gi|449465093|ref|XP_004150263.1| (PREDICTED: phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-23
Identity = 65/88 (73.86%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 37  MAPKLLTSIFTFLFLFFSFVSSVTT-IGARPVPVPGFSNAFPGTSRDELKAGDDALEEES 96
           MA KL TSI+ FLFLF  F SS TT I ARPVP  GFSNAF GTSRD +   DD LEEES
Sbjct: 1   MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVP--GFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 97  CEEIGEEYCLMRKTLAAHADYIYTDSQR 124
           C+EIGEEYCLMRKTLAAH DYIYTD+Q+
Sbjct: 61  CDEIGEEYCLMRKTLAAHVDYIYTDTQK 86

[Close]

BLAST of CmaCh16G003080 vs. NCBI nr
Match: gi|659108845|ref|XP_008454416.1| (PREDICTED: phytosulfokines-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 62/88 (70.45%), Postives = 69/88 (78.41%), Query Frame = 1


Query: 37  MAPKLLTSIFTFLFLFFSFVSSVTT-IGARPVPVPGFSNAFPGTSRDELKAGDDALEEES 96
           MA KL TSI+ FLFLF  F SS TT + ARPVP  GFSNAF  TSRD +   DD LEEES
Sbjct: 1   MASKLFTSIYPFLFLFLFFSSSSTTPVAARPVP--GFSNAFLDTSRDGVV--DDVLEEES 60

Query: 97  CEEIGEEYCLMRKTLAAHADYIYTDSQR 124
           C+EIGE+YCLMRKT+AAH DYIYTDSQ+
Sbjct: 61  CDEIGEDYCLMRKTVAAHVDYIYTDSQK 84

[Close]

BLAST of CmaCh16G003080 vs. NCBI nr
Match: gi|595794051|ref|XP_007200774.1| (hypothetical protein PRUPE_ppa023881mg [Prunus persica])

HSP 1 Score: 65.9 bits (159), Expect = 5.9e-08
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 37  MAPKLLTSIFTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELK--AGDDALEEE 96
           MA KL +  F  L LF S  SS     ARP+P    +NA    ++DELK    + A+ EE
Sbjct: 1   MASKLTSLCFIALILFLSLSSSA----ARPLPSAFDANAMK--AQDELKDVEVEKAMVEE 60

Query: 97  SCEEIGEEYCLMRKTLAAHADYIYT 120
           SCE +GEE CLMR+TLAAH DYIYT
Sbjct: 61  SCEGVGEEECLMRRTLAAHIDYIYT 79

[Close]

BLAST of CmaCh16G003080 vs. NCBI nr
Match: gi|645261372|ref|XP_008236262.1| (PREDICTED: phytosulfokines-like [Prunus mume])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 37  MAPKLLTSIFTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELK--AGDDALEEE 96
           MA KL +  F  L LF S   S     ARP+P    +NA    ++DE+K    + A+ EE
Sbjct: 1   MASKLTSLCFIALILFLSLSCSA----ARPLPSASDANAMK--AQDEVKDVEVEKAMVEE 60

Query: 97  SCEEIGEEYCLMRKTLAAHADYIYT 120
           SCE +GEE CLMR+TLAAH DYIYT
Sbjct: 61  SCEGVGEEECLMRRTLAAHIDYIYT 79

[Close]

BLAST of CmaCh16G003080 vs. NCBI nr
Match: gi|224095017|ref|XP_002310329.1| (Phytosulfokines 3 precursor family protein [Populus trichocarpa])

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-06
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 47  TFLFLFFSFV-SSVTTIGARPVPVPGFSNAFPGTSRDELKAGDDA-LEEESCEEIGEEYC 106
           T LFL  S +  S  T  ARP P  GF N     ++ ++   + A + EESCE +GEE C
Sbjct: 7   TTLFLIVSLLLCSTLTYAARPEP--GFPNGSLAKNQQKVVDAEHAEVMEESCEGVGEEEC 66

Query: 107 LMRKTLAAHADYIYTDSQR 124
           LMR+TLAAH DYIYT   +
Sbjct: 67  LMRRTLAAHTDYIYTQKHK 83

The following BLAST results are available for this feature:

BLAST of CmaCh16G003080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G003080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY18_CUCSA	7.0e-24	73.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1	[more]
M5VYE0_PRUPE	4.1e-08	51.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1	[more]
B9HFY9_POPTR	3.8e-06	46.84	Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=...	[more]

BLAST of CmaCh16G003080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49780.1	2.6e-06	35.90	phytosulfokine 4 precursor	[more]

BLAST of CmaCh16G003080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465093\|ref\|XP_004150263.1\|	1.0e-23	73.86	PREDICTED: phytosulfokines 3 [Cucumis sativus]	[more]
gi\|659108845\|ref\|XP_008454416.1\|	3.6e-21	70.45	PREDICTED: phytosulfokines-like [Cucumis melo]	[more]
gi\|595794051\|ref\|XP_007200774.1\|	5.9e-08	51.76	hypothetical protein PRUPE_ppa023881mg [Prunus persica]	[more]
gi\|645261372\|ref\|XP_008236262.1\|	2.2e-07	49.41	PREDICTED: phytosulfokines-like [Prunus mume]	[more]
gi\|224095017\|ref\|XP_002310329.1\|	5.5e-06	46.84	Phytosulfokines 3 precursor family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009438	Phytosulfokine

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008283	cell proliferation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008083	growth factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G003080.1	CmaCh16G003080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 83..123 score: 3.3
None	No IPR available	PANTHER	PTHR33285	FAMILY NOT NAMED	coord: 30..125 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G003080	Cucsa.298460	Cucumber (Gy14) v1	cgycmaB0824
CmaCh16G003080	Cla006452	Watermelon (97103) v1	cmawmB293
CmaCh16G003080	Csa4G000620	Cucumber (Chinese Long) v2	cmacuB333
CmaCh16G003080	ClCG10G010060	Watermelon (Charleston Gray)	cmawcgB280
CmaCh16G003080	CSPI04G00130	Wild cucumber (PI 183967)	cmacpiB338
CmaCh16G003080	CmoCh16G003270	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G003080	CmoCh04G004660	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G003080	Cp4.1LG14g04590	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G003080	MELO3C032871.2	Melon (DHL92) v3.6.1	cmamedB354
CmaCh16G003080	CsaV3_4G000100	Cucumber (Chinese Long) v3	cmacucB0388
CmaCh16G003080	Bhi11G000915	Wax gourd	cmawgoB0410
CmaCh16G003080	CsGy4G000140	Cucumber (Gy14) v2	cgybcmaB494
CmaCh16G003080	Carg19698	Silver-seed gourd	carcmaB0406

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G003080	Melon (DHL92) v3.6.1	cmamedB331
CmaCh16G003080	Silver-seed gourd	carcmaB0526
CmaCh16G003080	Cucumber (Chinese Long) v3	cmacucB0414
CmaCh16G003080	Watermelon (97103) v2	cmawmbB332
CmaCh16G003080	Watermelon (97103) v2	cmawmbB342
CmaCh16G003080	Cucurbita maxima (Rimu)	cmacmaB135
CmaCh16G003080	Cucurbita maxima (Rimu)	cmacmaB340
CmaCh16G003080	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G003080	Cucumber (Gy14) v1	cgycmaB0623
CmaCh16G003080	Cucurbita moschata (Rifu)	cmacmoB318
CmaCh16G003080	Wild cucumber (PI 183967)	cmacpiB351
CmaCh16G003080	Cucumber (Chinese Long) v2	cmacuB348
CmaCh16G003080	Melon (DHL92) v3.5.1	cmameB287
CmaCh16G003080	Melon (DHL92) v3.5.1	cmameB303
CmaCh16G003080	Watermelon (Charleston Gray)	cmawcgB293
CmaCh16G003080	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G003080	Bottle gourd (USVL1VR-Ls)	cmalsiB307