CmoCh16G003270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G003270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr16 : 1492221 .. 1492896 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCGGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGGTACGTAAATTTATCAGCAATTGCTCTTGTTAATATGTCTTTCTATAAAGAAAGAAAATTGTAGTGAATATTGTGTGCTTTTTTTCCTTCTTTTTGGGAAGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGAGATTATTTAAATAGAATTAGTGACAAAAGGAAGAGATTCTTCTGTAAGTTTGGGAAATTATATTAGTGTAATTATGTTTAATTAGTGACTAATTGTTAACTTTTATATAATCCAGGTTAAAGAAACTAGATTTACTAAGTTTCTTCGGGTCACGATATCATAATTATGTATCATGATTTGATTAGCCTAAGGTAATCATTTCTAAGTATTCACATTACGTATTATGGATTGAAAATTTTTCGGTATGTCGAGAGGACATTAATATTCGATCGTATAATCAGATTTATATCGCTCGTGAACCAGAG

mRNA sequence

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCGGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGAGATTATTTAAATAGAATTAGTGACAAAAGGAAGAGATTCTTCTGTAAGTTTGGGAAATTATATTAGTGTAATTATGTTTAATTAGTGACTAATTGTTAACTTTTATATAATCCAGGTTAAAGAAACTAGATTTACTAAGTTTCTTCGGGTCACGATATCATAATTATGTATCATGATTTGATTAGCCTAAGGTAATCATTTCTAAGTATTCACATTACGTATTATGGATTGAAAATTTTTCGGTATGTCGAGAGGACATTAATATTCGATCGTATAATCAGATTTATATCGCTCGTGAACCAGAG

Coding sequence (CDS)

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCGGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGA

Homology

[Close]

BLAST of CmoCh16G003270 vs. TrEMBL
Match: A0A0A0KY18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGARPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FLFLF  F SS+TT I ARPVP  GFSNAF GTSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVP--GFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 88
          C+EIGEEYCLMRKTLAAH DYIYTD+Q+
Sbjct: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQK 86

[Close]

BLAST of CmoCh16G003270 vs. TrEMBL
Match: M5VYE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-08
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLK--AGDDALEEE 60
          MASKL +  F  L LF S  SSA    ARP+P    +NA    ++D LK    + A+ EE
Sbjct: 1  MASKLTSLCFIALILFLSLSSSA----ARPLPSAFDANAMK--AQDELKDVEVEKAMVEE 60

Query: 61 SCEEIGEEYCLMRKTLAAHADYIYT 84
          SCE +GEE CLMR+TLAAH DYIYT
Sbjct: 61 SCEGVGEEECLMRRTLAAHIDYIYT 79

[Close]

BLAST of CmoCh16G003270 vs. TrEMBL
Match: D7U6X7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1328g00020 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.6e-06
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 14 FLFFSFVSSATTIGARPVPVPGFSNAFPG-TSRDGLKAGDDALEEESCEEIGEEYCLMRK 73
          F+   F+ S  T  ARP P     + FPG T   G++A    + + +CE +GE+ CLMR+
Sbjct: 9  FILALFLCSTLTYAARPQPAS--PHDFPGKTQHGGVEAERAEVVDGNCEGVGEDECLMRR 68

Query: 74 TLAAHADYIYTDSQR 88
          TLAAH DYIYT  ++
Sbjct: 69 TLAAHIDYIYTQKEK 81

[Close]

BLAST of CmoCh16G003270 vs. TrEMBL
Match: B9HFY9_POPTR (Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-06
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 11 TFLFLFFSFVSSAT-TIGARPVPVPGFSNAFPGTSRDGLKAGDDA-LEEESCEEIGEEYC 70
          T LFL  S +  +T T  ARP P  GF N     ++  +   + A + EESCE +GEE C
Sbjct: 7  TTLFLIVSLLLCSTLTYAARPEP--GFPNGSLAKNQQKVVDAEHAEVMEESCEGVGEEEC 66

Query: 71 LMRKTLAAHADYIYTDSQR 88
          LMR+TLAAH DYIYT   +
Sbjct: 67 LMRRTLAAHTDYIYTQKHK 83

[Close]

BLAST of CmoCh16G003270 vs. TrEMBL
Match: A0A061DP82_THECC (Phytosulfokines 3, putative OS=Theobroma cacao GN=TCM_000832 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.0e-06
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1


Query: 6  LTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPG-TSRDGLKAGDDALEEESCEEIG 65
          L ++F    L  S +S A   G      P F N  P  T  +G++  +    E+SCE +G
Sbjct: 4  LATLFILTLLLVSTLSFAARSG------PAFPNESPAKTQPEGVETENTEAVEDSCEGVG 63

Query: 66 EEYCLMRKTLAAHADYIYTDSQR 88
          EE CLMR+TLAAH DYIYT  Q+
Sbjct: 64 EEECLMRRTLAAHIDYIYTQKQK 80

[Close]

BLAST of CmoCh16G003270 vs. TAIR10
Match: AT3G49780.1 (AT3G49780.1 phytosulfokine 4 precursor)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 1


Query: 10 FTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESCEEIGEEYCL 69
          FT +F+    + S  T  AR  P    + +   + ++      D +EEESC  IGEE CL
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTTTALSRENSVKE---IEGDKVEEESCNGIGEEECL 63

Query: 70 MRKTLAAHADYIYTDSQR 88
          +R++L  H DYIYT + +
Sbjct: 64 IRRSLVLHTDYIYTQNHK 78

[Close]

BLAST of CmoCh16G003270 vs. NCBI nr
Match: gi|449465093|ref|XP_004150263.1| (PREDICTED: phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGARPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FLFLF  F SS+TT I ARPVP  GFSNAF GTSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVP--GFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 88
          C+EIGEEYCLMRKTLAAH DYIYTD+Q+
Sbjct: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQK 86

[Close]

BLAST of CmoCh16G003270 vs. NCBI nr
Match: gi|659108845|ref|XP_008454416.1| (PREDICTED: phytosulfokines-like [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 6.0e-23
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGARPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FLFLF  F SS+TT + ARPVP  GFSNAF  TSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPVAARPVP--GFSNAFLDTSRDGVV--DDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 88
          C+EIGE+YCLMRKT+AAH DYIYTDSQ+
Sbjct: 61 CDEIGEDYCLMRKTVAAHVDYIYTDSQK 84

[Close]

BLAST of CmoCh16G003270 vs. NCBI nr
Match: gi|595794051|ref|XP_007200774.1| (hypothetical protein PRUPE_ppa023881mg [Prunus persica])

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-08
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLK--AGDDALEEE 60
          MASKL +  F  L LF S  SSA    ARP+P    +NA    ++D LK    + A+ EE
Sbjct: 1  MASKLTSLCFIALILFLSLSSSA----ARPLPSAFDANAMK--AQDELKDVEVEKAMVEE 60

Query: 61 SCEEIGEEYCLMRKTLAAHADYIYT 84
          SCE +GEE CLMR+TLAAH DYIYT
Sbjct: 61 SCEGVGEEECLMRRTLAAHIDYIYT 79

[Close]

BLAST of CmoCh16G003270 vs. NCBI nr
Match: gi|645261372|ref|XP_008236262.1| (PREDICTED: phytosulfokines-like [Prunus mume])

HSP 1 Score: 64.7 bits (156), Expect = 9.4e-08
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          MASKL +  F  L LF S   SA    ARP+P    +NA            + A+ EESC
Sbjct: 1  MASKLTSLCFIALILFLSLSCSA----ARPLPSASDANAMKAQDEVKDVEVEKAMVEESC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYT 84
          E +GEE CLMR+TLAAH DYIYT
Sbjct: 61 EGVGEEECLMRRTLAAHIDYIYT 79

[Close]

BLAST of CmoCh16G003270 vs. NCBI nr
Match: gi|225467412|ref|XP_002271337.1| (PREDICTED: phytosulfokines 3 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 14 FLFFSFVSSATTIGARPVPVPGFSNAFPG-TSRDGLKAGDDALEEESCEEIGEEYCLMRK 73
          F+   F+ S  T  ARP P     + FPG T   G++A    + + +CE +GE+ CLMR+
Sbjct: 9  FILALFLCSTLTYAARPQPAS--PHDFPGKTQHGGVEAERAEVVDGNCEGVGEDECLMRR 68

Query: 74 TLAAHADYIYTDSQR 88
          TLAAH DYIYT  ++
Sbjct: 69 TLAAHIDYIYTQKEK 81

The following BLAST results are available for this feature:

BLAST of CmoCh16G003270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G003270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY18_CUCSA	1.2e-25	76.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000620 PE=4 SV=1	[more]
M5VYE0_PRUPE	2.9e-08	52.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023881mg PE=4 SV=1	[more]
D7U6X7_VITVI	3.6e-06	42.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1328g00020 PE=4 SV=...	[more]
B9HFY9_POPTR	4.7e-06	46.84	Phytosulfokines 3 family protein OS=Populus trichocarpa GN=POPTR_0007s14750g PE=...	[more]
A0A061DP82_THECC	8.0e-06	42.17	Phytosulfokines 3, putative OS=Theobroma cacao GN=TCM_000832 PE=4 SV=1	[more]

BLAST of CmoCh16G003270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49780.1	1.9e-06	35.90	phytosulfokine 4 precursor	[more]

BLAST of CmoCh16G003270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465093\|ref\|XP_004150263.1\|	1.7e-25	76.14	PREDICTED: phytosulfokines 3 [Cucumis sativus]	[more]
gi\|659108845\|ref\|XP_008454416.1\|	6.0e-23	72.73	PREDICTED: phytosulfokines-like [Cucumis melo]	[more]
gi\|595794051\|ref\|XP_007200774.1\|	4.2e-08	52.94	hypothetical protein PRUPE_ppa023881mg [Prunus persica]	[more]
gi\|645261372\|ref\|XP_008236262.1\|	9.4e-08	49.40	PREDICTED: phytosulfokines-like [Prunus mume]	[more]
gi\|225467412\|ref\|XP_002271337.1\|	5.1e-06	42.67	PREDICTED: phytosulfokines 3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009438	Phytosulfokine

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008283	cell proliferation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008083	growth factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G003270.1	CmoCh16G003270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 52..87 score: 4.0
None	No IPR available	PANTHER	PTHR33285	FAMILY NOT NAMED	coord: 1..89 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G003270	Cucsa.298460	Cucumber (Gy14) v1	cgycmoB0818
CmoCh16G003270	CmaCh16G003080	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G003270	CmaCh04G004360	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G003270	Cla006452	Watermelon (97103) v1	cmowmB287
CmoCh16G003270	Csa4G000620	Cucumber (Chinese Long) v2	cmocuB322
CmoCh16G003270	ClCG10G010060	Watermelon (Charleston Gray)	cmowcgB273
CmoCh16G003270	CSPI04G00130	Wild cucumber (PI 183967)	cmocpiB329
CmoCh16G003270	Cp4.1LG14g04590	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G003270	MELO3C032871.2	Melon (DHL92) v3.6.1	cmomedB342
CmoCh16G003270	CsaV3_4G000100	Cucumber (Chinese Long) v3	cmocucB0385
CmoCh16G003270	Bhi11G000915	Wax gourd	cmowgoB0405
CmoCh16G003270	CsGy4G000140	Cucumber (Gy14) v2	cgybcmoB465
CmoCh16G003270	Carg19698	Silver-seed gourd	carcmoB0402

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G003270	CmoCh04G004660	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G003270	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh16G003270	Cucumber (Gy14) v1	cgycmoB0625
CmoCh16G003270	Cucurbita maxima (Rimu)	cmacmoB133
CmoCh16G003270	Cucurbita maxima (Rimu)	cmacmoB502
CmoCh16G003270	Wild cucumber (PI 183967)	cmocpiB344
CmoCh16G003270	Cucumber (Chinese Long) v2	cmocuB338
CmoCh16G003270	Melon (DHL92) v3.5.1	cmomeB280
CmoCh16G003270	Melon (DHL92) v3.5.1	cmomeB298
CmoCh16G003270	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G003270	Cucurbita pepo (Zucchini)	cmocpeB321
CmoCh16G003270	Bottle gourd (USVL1VR-Ls)	cmolsiB294
CmoCh16G003270	Melon (DHL92) v3.6.1	cmomedB317
CmoCh16G003270	Silver-seed gourd	carcmoB0509
CmoCh16G003270	Cucumber (Chinese Long) v3	cmocucB0409
CmoCh16G003270	Watermelon (97103) v2	cmowmbB316