Carg08110 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08110
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ubiquinol-cytochrome C reductase
Location	Cucurbita_argyrosperma_scaffold_050 : 777099 .. 778604 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTTTTGCCATGAAGTTCCAAAATTGCCCTTCACAATGTCTTTATATTCATCTTCACAGTCCCTCCTCTTCCCCATCTCTCTCAATGGCTTCCAAGCTTGTGACCTCCATCTTCACGTTTCTCTTCCTTTTCTTCTTTTTATTCTCCTCGACGACCTCCGTTTTTGCTCAGCCCATTCCCGGCTCTACAAACACGTCTCCTAGGACTACTCGAGACGGGGTACGTGAATTTATCAAAATTTTCTCTAGCTAATATAATGCCGGATTAAAAGTAGTAAACATTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAGTTTAAGGTTGTGGATGATGTTTTGGAAGAGGAGAGCTGTGGAATTGGAGAAGAACATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAAGCAAAGACCATGAATATTATTTGTACCTCATTCTTCGGCTCGAATCTTTGACTTTTTGGTCAAATGTATATTCTTAACCAATTGAGTTATGTTCCGGTTGATCAAACCCGATATACTAAACTTAAATTTAGTTACTTCTTTCGAGTCATGATATCATATTGTGTATTCCATGTCAACACGTCCAAGCAGTAAAAAAAAAGAGTTTTTTTTTTTTTTTTTTTTTGTTATTTCTTAATTAGAATTGATAAAATTGTTTTTCATTGAAAAATCATAAAATTTTAATTGATGAAAAAATAAAAAGGGCTTTTTTGACATTTCAAATGAGTGCCTCTCATTTATGTTTTTCTTTTAATTATTGAGGTAATTACAAATATTGGAAAGAAAAATTATTTATATTTATAATTTTGTATTTATGGCAGTTTCGCAATTAAATAACGTCTTCATAAATTAACGAGAGCCACAGAAATAGGCGCCAATGTAAGCGCAATTTTCCCGCCGGGAAAATCACCGACTTCACTTTCTCTTCTCCCTCTCCCTACTTCTACCAAAACCACCATAACCTCAACCAGTTCATCGAAGATAATGGCTGACGCGGCCGCCGGAGACAAAAAACAGTTCTGGCTTCTGAAGACGGAACCAGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAACGGCGGCCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCGCAGAAGTATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCATCGTCGGCGTGATTTCCGTCGCACGGGAGTGGTATTCGGAGGGCGATGGCGGCGATGCTGTCGTCGACGTCGAGGCGGTCGGGGAAATGAGAGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGATGAAGGATTTCGCGCTGTTTCGGCAACCGAGACTGTCTGTTGTGCCGGTAGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACAGATTGCCGCCATGGGAGTGAGGAATAG

mRNA sequence

ATGGCTCCTTTTGCCATGAAGTTCCAAAATTGCCCTTCACAATGTCTTTATATTCATCTTCACAGTCCCTCCTCTTCCCCATCTCTCTCAATGGCTTCCAAGCTTGTGACCTCCATCTTCACGTTTCTCTTCCTTTTCTTCTTTTTATTCTCCTCGACGACCTCCGTTTTTGCTCAGCCCATTCCCGGCTCTACAAACACGTCTCCTAGGACTACTCGAGACGGGTTTAAGGTTGTGGATGATGTTTTGGAAGAGGAGAGCTGTAATTACAAATATTGGAAAGAAAAATTATTTATATTTATAATTTTAGCCACAGAAATAGGCGCCAATGTAAGCGCAATTTTCCCGCCGGGAAAATCACCGACTTCACTTTCTCTTCTCCCTCTCCCTACTTCTACCAAAACCACCATAACCTCAACCAGTTCATCGAAGATAATGGCTGACGCGGCCGCCGGAGACAAAAAACAGTTCTGGCTTCTGAAGACGGAACCAGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAACGGCGGCCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCGCAGAAGTATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCATCGTCGGCGTGATTTCCGTCGCACGGGAGTGGTATTCGGAGGGCGATGGCGGCGATGCTGTCGTCGACGTCGAGGCGGTCGGGGAAATGAGAGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGATGAAGGATTTCGCGCTGTTTCGGCAACCGAGACTGTCTGTTGTGCCGGTAGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACAGATTGCCGCCATGGGAGTGAGGAATAG

Coding sequence (CDS)

ATGGCTCCTTTTGCCATGAAGTTCCAAAATTGCCCTTCACAATGTCTTTATATTCATCTTCACAGTCCCTCCTCTTCCCCATCTCTCTCAATGGCTTCCAAGCTTGTGACCTCCATCTTCACGTTTCTCTTCCTTTTCTTCTTTTTATTCTCCTCGACGACCTCCGTTTTTGCTCAGCCCATTCCCGGCTCTACAAACACGTCTCCTAGGACTACTCGAGACGGGTTTAAGGTTGTGGATGATGTTTTGGAAGAGGAGAGCTGTAATTACAAATATTGGAAAGAAAAATTATTTATATTTATAATTTTAGCCACAGAAATAGGCGCCAATGTAAGCGCAATTTTCCCGCCGGGAAAATCACCGACTTCACTTTCTCTTCTCCCTCTCCCTACTTCTACCAAAACCACCATAACCTCAACCAGTTCATCGAAGATAATGGCTGACGCGGCCGCCGGAGACAAAAAACAGTTCTGGCTTCTGAAGACGGAACCAGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAACGGCGGCCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCGCAGAAGTATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCATCGTCGGCGTGATTTCCGTCGCACGGGAGTGGTATTCGGAGGGCGATGGCGGCGATGCTGTCGTCGACGTCGAGGCGGTCGGGGAAATGAGAGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGATGAAGGATTTCGCGCTGTTTCGGCAACCGAGACTGTCTGTTGTGCCGGTAGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACAGATTGCCGCCATGGGAGTGAGGAATAG

Protein sequence

MAPFAMKFQNCPSQCLYIHLHSPSSSPSLSMASKLVTSIFTFLFLFFFLFSSTTSVFAQPIPGSTNTSPRTTRDGFKVVDDVLEEESCNYKYWKEKLFIFIILATEIGANVSAIFPPGKSPTSLSLLPLPTSTKTTITSTSSSKIMADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKARRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE

Homology

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BLAST of Carg08110 vs. NCBI nr
Match: XP_022941981.1 (thymocyte nuclear protein 1 [Cucurbita moschata])

HSP 1 Score: 327.4 bits (838), Expect = 5.1e-86
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 146 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 205
           MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY
Sbjct: 1   MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60

Query: 206 HSGAKARRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 265
           HSGAKARRIVGV+SVAREWY EGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF
Sbjct: 61  HSGAKARRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120

Query: 266 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 304
           RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 158

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BLAST of Carg08110 vs. NCBI nr
Match: XP_023530564.1 (thymocyte nuclear protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.6 bits (823), Expect = 2.8e-84
Identity = 153/158 (96.84%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 146 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 205
           MA AA GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGDLCFFY
Sbjct: 1   MAGAAVGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60

Query: 206 HSGAKARRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 265
           HSGAKARRIVGV+SVAREWYSEGDGGDAVVDVEAVGEMRE VDLKEMKKGIEGMKDFALF
Sbjct: 61  HSGAKARRIVGVVSVAREWYSEGDGGDAVVDVEAVGEMREPVDLKEMKKGIEGMKDFALF 120

Query: 266 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 304
           RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 158

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BLAST of Carg08110 vs. NCBI nr
Match: XP_022993182.1 (thymocyte nuclear protein 1 [Cucurbita maxima] >XP_022993192.1 thymocyte nuclear protein 1 [Cucurbita maxima])

HSP 1 Score: 317.0 bits (811), Expect = 6.9e-83
Identity = 150/158 (94.94%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 146 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 205
           MADAA GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGD CFFY
Sbjct: 1   MADAAVGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDHCFFY 60

Query: 206 HSGAKARRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 265
           HSGAKARRIVGV+SVAREWYSEGDGGD VVDVE VGEMRE VDLKEMKKGIEGMKDFALF
Sbjct: 61  HSGAKARRIVGVVSVAREWYSEGDGGDGVVDVEEVGEMREPVDLKEMKKGIEGMKDFALF 120

Query: 266 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 304
           RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHG+EE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGNEE 158

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BLAST of Carg08110 vs. NCBI nr
Match: XP_016901490.1 (PREDICTED: thymocyte nuclear protein 1 [Cucumis melo] >ADN33814.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 291.6 bits (745), Expect = 3.1e-75
Identity = 142/199 (71.36%), Postives = 160/199 (80.40%), Query Frame = 0


Query: 104 ATEIGANVSAIFPPGKSPTSXXXXXXXXXXXXXXXXXXXXXXMADAAAGDKKQFWLLKTE 163
           A  +GAN++ IFPP  SPTS                      MA+  AGDK+Q+WLLKTE
Sbjct: 4   AINLGANITTIFPPVTSPTSTSLLPLPLNRHKRNAVIRSEKTMANPVAGDKRQYWLLKTE 63

Query: 164 PAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKARRIVGVISVARE 223
           PAEWSWADQAAN GR+KWDGVKNKQAQK+LKSMKLGD CFFYHSGAKARR+VGV++VARE
Sbjct: 64  PAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE 123

Query: 224 WYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLSVVPVAKEIWEKI 283
           WYS  +  + VVDVEAVGEMRE VDLKEMKKG+EGMK+FALFRQPRLSVVPVAKEIW+KI
Sbjct: 124 WYSSVE-DEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIWDKI 183

Query: 284 CELGGGFEGDGTDCRHGSE 303
           CELGGGFEGDGT+  HGS+
Sbjct: 184 CELGGGFEGDGTEGGHGSD 201

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BLAST of Carg08110 vs. NCBI nr
Match: XP_004150262.2 (PREDICTED: thymocyte nuclear protein 1 [Cucumis sativus] >KGN52742.1 hypothetical protein Csa_4G000630 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 2.6e-69
Identity = 131/158 (82.91%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 146 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 205
           MA+A AGDK+Q+WLLKTEPAEWSWADQAAN GRT WDGVKNKQAQK+LKSMKLGD CFFY
Sbjct: 47  MANAVAGDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFY 106

Query: 206 HSGAKARRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 265
           HSGAKARR+VGV++VAREWYS  D  + VVDVEAVGEMRE VDLKEMKK +EGMK+FALF
Sbjct: 107 HSGAKARRVVGVVAVAREWYSSVD-DEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALF 166

Query: 266 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 304
           RQPRLSVVPV KEIW+KICELGGGFEGDGT+   GSEE
Sbjct: 167 RQPRLSVVPVTKEIWDKICELGGGFEGDGTEGGDGSEE 203

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BLAST of Carg08110 vs. TAIR10
Match: AT2G14660.1 (unknown protein)

HSP 1 Score: 208.8 bits (530), Expect = 4.8e-54
Identity = 104/158 (65.82%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 152 GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 211
           G  K++WLLKTEP EWSW+DQ +NGG +KWDGVKNKQAQK LKSM LGDLCFFYHSG K+
Sbjct: 2   GKTKRYWLLKTEPNEWSWSDQESNGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTKS 61

Query: 212 RRIVGVISVAREWY---SEGDGGDAVVDVEAVGEMREAVDLKEMK--KGIEGMKDFALFR 271
           R +VGV+ V+REWY   +EG  G+  VDV+A+GEMR+ VDLKEMK  KGI   K F LFR
Sbjct: 62  RCVVGVVEVSREWYTDDAEGVEGEGAVDVKAIGEMRKCVDLKEMKGDKGII-TKGFVLFR 121

Query: 272 QPRLSVVPVAKEIWEKICELGGGFEGDG-TDCRHGSEE 304
           QPRLSVVPV +++W  ICELG GF GDG  DC    +E
Sbjct: 122 QPRLSVVPVEEDVWNMICELGNGFCGDGKEDCESSDDE 158

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BLAST of Carg08110 vs. Swiss-Prot
Match: sp|Q91YJ3|THYN1_MOUSE (Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-13
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = 0


Query: 157 FWLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKYLKSMKLGDLCFFYH 216
           +WL+K+EP          ++S  D  A   +T  WDGV+N QA+ +L++MKL D  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYH 116

Query: 217 SGAKARRIVGVISVAREWY-----------------SEGDGGDAVVDVEAVGEMREAVDL 276
           S  K   IVG++ + +E Y                  E D   ++VDV+ V  M+  + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPL 176

Query: 277 KEMK------KGIEG-MKDFALFRQPRLSVVPVAKEIWEKICEL 287
           +E+K      K   G +K   LF + RLSV P+ +E ++ I  L
Sbjct: 177 EELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of Carg08110 vs. Swiss-Prot
Match: sp|Q6P3E0|THYN1_RAT (Thymocyte nuclear protein 1 OS=Rattus norvegicus OX=10116 GN=Thyn1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-12
Identity = 55/164 (33.54%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 157 FWLLKTEP---------AEWSWAD-QAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYH 216
           +WL+K+EP          ++S  D QA     T WDGV+N QA  +L++MKL D  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWNFLRAMKLEDEAFFYH 116

Query: 217 SGAKARRIVGVISVAREWY-----------------SEGDGGDAVVDVEAVGEMREAVDL 276
           S  K   IVG++ + +E Y                  E +   ++VDV+ V  M+  + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWSMVDVQFVRMMKRFISL 176

Query: 277 KEMK------KGIEG-MKDFALFRQPRLSVVPVAKEIWEKICEL 287
            E+K      K   G +K   LF + RLSV P+ +E ++ I  L
Sbjct: 177 DELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of Carg08110 vs. Swiss-Prot
Match: sp|Q90679|THYN1_CHICK (Thymocyte nuclear protein 1 OS=Gallus gallus OX=9031 GN=THYN1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.4e-12
Identity = 51/163 (31.29%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 158 WLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKYLKSMKLGDLCFFYHS 217
           WLLK+EP          ++S  D  A   +T  W+GV+N QA+ +L++MKLG   FFYHS
Sbjct: 74  WLLKSEPESRLEKGVDVKFSIEDLKAQPNQTTFWEGVRNYQARNFLRAMKLGQQAFFYHS 133

Query: 218 GAKARRIVGVISVAREWYSEGDGGD-----------------AVVDVEAVGEMREAVDLK 277
             K   IVG++ + +E Y +    D                 ++VDV+ V   +  + L 
Sbjct: 134 NCKEPGIVGIVKIVKEAYPDHTQFDQKDPHYDSSSRKENPKWSMVDVQFVRMTKRFIPLS 193

Query: 278 EMK------KGIEG-MKDFALFRQPRLSVVPVAKEIWEKICEL 287
           E+K      K   G +K+  LF + RLS+ P+ +E ++ +  L
Sbjct: 194 EIKTHHLAHKADGGPLKNMMLFSRQRLSIQPLTQEEFDFVLSL 236

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BLAST of Carg08110 vs. Swiss-Prot
Match: sp|Q9P016|THYN1_HUMAN (Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.4e-12
Identity = 51/163 (31.29%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 158 WLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKYLKSMKLGDLCFFYHS 217
           WL+K+EP          ++S  D  A   +T  WDGV+N QA+ +L++MKLG+  FFYHS
Sbjct: 57  WLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHS 116

Query: 218 GAKARRIVGVISVAREWY-----------------SEGDGGDAVVDVEAVGEMREAVDLK 277
             K   I G++ + +E Y                  E +   ++VDV+ V  M+  + L 
Sbjct: 117 NCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLA 176

Query: 278 EMK------KGIEG-MKDFALFRQPRLSVVPVAKEIWEKICEL 287
           E+K      K   G +K+  LF + RLS+ P+ +E ++ +  L
Sbjct: 177 ELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 219

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BLAST of Carg08110 vs. Swiss-Prot
Match: sp|Q6PFL8|THYN1_DANRE (Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.3e-11
Identity = 51/163 (31.29%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 158 WLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKYLKSMKLGDLCFFYHS 217
           WL+K+EP          ++   D  A   +T  WDGV+N QA+ +++ MK+G   FFYHS
Sbjct: 63  WLMKSEPESRIENGVDVKFGIEDLKALPNQTGCWDGVRNYQARNFMREMKVGQQAFFYHS 122

Query: 218 GAKARRIVGVISVAREWY---SEGDGGDA--------------VVDVEAVGEMREAVDLK 277
             K   I G++ + +E Y   ++ D  D               +VDV+    ++  + L 
Sbjct: 123 NCKEPGIAGLMKIVKEAYVDHTQFDKKDVHYDPSSKADNPKWHMVDVQFERMVKRFIPLA 182

Query: 278 EMKK-----GIEG--MKDFALFRQPRLSVVPVAKEIWEKICEL 287
           E+KK      ++G  +KD ALF + RLSV P+  E +E +  L
Sbjct: 183 ELKKYHLEHRVKGGPLKDMALFTRARLSVQPLTAEEFEFVLSL 225

[Close]

BLAST of Carg08110 vs. TrEMBL
Match: tr|A0A1S4E0I6|A0A1S4E0I6_CUCME (thymocyte nuclear protein 1 OS=Cucumis melo OX=3656 GN=LOC103494826 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 142/199 (71.36%), Postives = 160/199 (80.40%), Query Frame = 0


Query: 104 ATEIGANVSAIFPPGKSPTSXXXXXXXXXXXXXXXXXXXXXXMADAAAGDKKQFWLLKTE 163
           A  +GAN++ IFPP  SPTS                      MA+  AGDK+Q+WLLKTE
Sbjct: 4   AINLGANITTIFPPVTSPTSTSLLPLPLNRHKRNAVIRSEKTMANPVAGDKRQYWLLKTE 63

Query: 164 PAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKARRIVGVISVARE 223
           PAEWSWADQAAN GR+KWDGVKNKQAQK+LKSMKLGD CFFYHSGAKARR+VGV++VARE
Sbjct: 64  PAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE 123

Query: 224 WYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLSVVPVAKEIWEKI 283
           WYS  +  + VVDVEAVGEMRE VDLKEMKKG+EGMK+FALFRQPRLSVVPVAKEIW+KI
Sbjct: 124 WYSSVE-DEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIWDKI 183

Query: 284 CELGGGFEGDGTDCRHGSE 303
           CELGGGFEGDGT+  HGS+
Sbjct: 184 CELGGGFEGDGTEGGHGSD 201

[Close]

BLAST of Carg08110 vs. TrEMBL
Match: tr|E5GBH2|E5GBH2_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 142/199 (71.36%), Postives = 160/199 (80.40%), Query Frame = 0


Query: 104 ATEIGANVSAIFPPGKSPTSXXXXXXXXXXXXXXXXXXXXXXMADAAAGDKKQFWLLKTE 163
           A  +GAN++ IFPP  SPTS                      MA+  AGDK+Q+WLLKTE
Sbjct: 4   AINLGANITTIFPPVTSPTSTSLLPLPLNRHKRNAVIRSEKTMANPVAGDKRQYWLLKTE 63

Query: 164 PAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKARRIVGVISVARE 223
           PAEWSWADQAAN GR+KWDGVKNKQAQK+LKSMKLGD CFFYHSGAKARR+VGV++VARE
Sbjct: 64  PAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE 123

Query: 224 WYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLSVVPVAKEIWEKI 283
           WYS  +  + VVDVEAVGEMRE VDLKEMKKG+EGMK+FALFRQPRLSVVPVAKEIW+KI
Sbjct: 124 WYSSVE-DEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIWDKI 183

Query: 284 CELGGGFEGDGTDCRHGSE 303
           CELGGGFEGDGT+  HGS+
Sbjct: 184 CELGGGFEGDGTEGGHGSD 201

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BLAST of Carg08110 vs. TrEMBL
Match: tr|A0A0A0KWC0|A0A0A0KWC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000630 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 131/158 (82.91%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 146 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 205
           MA+A AGDK+Q+WLLKTEPAEWSWADQAAN GRT WDGVKNKQAQK+LKSMKLGD CFFY
Sbjct: 47  MANAVAGDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFY 106

Query: 206 HSGAKARRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 265
           HSGAKARR+VGV++VAREWYS  D  + VVDVEAVGEMRE VDLKEMKK +EGMK+FALF
Sbjct: 107 HSGAKARRVVGVVAVAREWYSSVD-DEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALF 166

Query: 266 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 304
           RQPRLSVVPV KEIW+KICELGGGFEGDGT+   GSEE
Sbjct: 167 RQPRLSVVPVTKEIWDKICELGGGFEGDGTEGGDGSEE 203

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BLAST of Carg08110 vs. TrEMBL
Match: tr|A0A2P6PK21|A0A2P6PK21_ROSCH (Putative PUA-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0248511 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.8e-61
Identity = 114/143 (79.72%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 152 GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 211
           G +KQ+WLLKTEP EWSW DQAAN G TKWDGVKNKQAQKYLKSM L DLCFFYHSGAKA
Sbjct: 2   GKEKQYWLLKTEPGEWSWEDQAANEGITKWDGVKNKQAQKYLKSMNLDDLCFFYHSGAKA 61

Query: 212 RRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLS 271
           RRIVGV++V REWYSEG+GGD  VDV+AVGEMR  VDLKEM KG EG+K FALFRQPRLS
Sbjct: 62  RRIVGVVTVVREWYSEGEGGDGAVDVKAVGEMRRPVDLKEM-KGEEGLKGFALFRQPRLS 121

Query: 272 VVPVAKEIWEKICELGGGFEGDG 295
           VVPV++++W K+C+LGGGFEGDG
Sbjct: 122 VVPVSEDVWLKVCDLGGGFEGDG 143

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BLAST of Carg08110 vs. TrEMBL
Match: tr|A0A251MY88|A0A251MY88_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G149700 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 110/144 (76.39%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 152 GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 211
           G++K +WLLKTEP EWSW DQAANGG TKWDGVKNKQAQK LKSMKLGDLCFFYHSGAKA
Sbjct: 2   GEEKHYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNLKSMKLGDLCFFYHSGAKA 61

Query: 212 RRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLS 271
           RR+VGV++V REWYS+G G D VVDV+AVGEMR  VDLKEM KG +G+K FALFRQPRLS
Sbjct: 62  RRVVGVVAVVREWYSDG-GDDGVVDVKAVGEMRRPVDLKEM-KGEKGLKGFALFRQPRLS 121

Query: 272 VVPVAKEIWEKICELGGGFEGDGT 296
           VVPV +++W ++C+LGGG++GDGT
Sbjct: 122 VVPVPEDVWIRVCDLGGGYQGDGT 143

The following BLAST results are available for this feature:

BLAST of Carg08110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941981.1	5.1e-86	98.73	thymocyte nuclear protein 1 [Cucurbita moschata]	[more]
XP_023530564.1	2.8e-84	96.84	thymocyte nuclear protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022993182.1	6.9e-83	94.94	thymocyte nuclear protein 1 [Cucurbita maxima] >XP_022993192.1 thymocyte nuclear...	[more]
XP_016901490.1	3.1e-75	71.36	PREDICTED: thymocyte nuclear protein 1 [Cucumis melo] >ADN33814.1 hypothetical p...	[more]
XP_004150262.2	2.6e-69	82.91	PREDICTED: thymocyte nuclear protein 1 [Cucumis sativus] >KGN52742.1 hypothetica...	[more]

BLAST of Carg08110 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14660.1	4.8e-54	65.82	unknown protein	[more]

BLAST of Carg08110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q91YJ3\|THYN1_MOUSE	5.2e-13	33.54	Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1	[more]
sp\|Q6P3E0\|THYN1_RAT	4.4e-12	33.54	Thymocyte nuclear protein 1 OS=Rattus norvegicus OX=10116 GN=Thyn1 PE=2 SV=1	[more]
sp\|Q90679\|THYN1_CHICK	7.4e-12	31.29	Thymocyte nuclear protein 1 OS=Gallus gallus OX=9031 GN=THYN1 PE=1 SV=1	[more]
sp\|Q9P016\|THYN1_HUMAN	7.4e-12	31.29	Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1	[more]
sp\|Q6PFL8\|THYN1_DANRE	6.3e-11	31.29	Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1	[more]

BLAST of Carg08110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0I6\|A0A1S4E0I6_CUCME	2.1e-75	71.36	thymocyte nuclear protein 1 OS=Cucumis melo OX=3656 GN=LOC103494826 PE=4 SV=1	[more]
tr\|E5GBH2\|E5GBH2_CUCME	2.1e-75	71.36	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KWC0\|A0A0A0KWC0_CUCSA	1.7e-69	82.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000630 PE=4 SV=1	[more]
tr\|A0A2P6PK21\|A0A2P6PK21_ROSCH	3.8e-61	79.72	Putative PUA-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOB...	[more]
tr\|A0A251MY88\|A0A251MY88_PRUPE	1.0e-58	76.39	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G149700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015947	PUA-like_sf
IPR002740	EVE_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08110-RA	Carg08110-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002740	EVE domain	PFAM	PF01878	EVE	coord: 156..286 e-value: 2.2E-36 score: 124.9
None	No IPR available	GENE3D	G3DSA:3.10.590.10		coord: 154..300 e-value: 2.4E-40 score: 139.9
None	No IPR available	PANTHER	PTHR14087	THYMOCYTE NUCLEAR PROTEIN 1	coord: 140..290
IPR015947	PUA-like superfamily	SUPERFAMILY	SSF88697	PUA domain-like	coord: 154..288

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08110	Cla006452	Watermelon (97103) v1	carwmB0366
Carg08110	Csa4G000630	Cucumber (Chinese Long) v2	carcuB0402
Carg08110	MELO3C018021	Melon (DHL92) v3.5.1	carmeB0383
Carg08110	ClCG10G010060	Watermelon (Charleston Gray)	carwcgB0365
Carg08110	CSPI04G00140	Wild cucumber (PI 183967)	carcpiB0407
Carg08110	Cucsa.298450	Cucumber (Gy14) v1	carcgyB0439
Carg08110	CmaCh04G004360	Cucurbita maxima (Rimu)	carcmaB0529
Carg08110	CmoCh04G004660	Cucurbita moschata (Rifu)	carcmoB0514
Carg08110	CsGy4G000150	Cucumber (Gy14) v2	carcgybB0383
Carg08110	MELO3C018021.2	Melon (DHL92) v3.6.1	carmedB0387
Carg08110	CsaV3_4G000110	Cucumber (Chinese Long) v3	carcucB0406
Carg08110	Cla97C10G193070	Watermelon (97103) v2	carwmbB0391
Carg08110	Bhi11G000917	Wax gourd	carwgoB0456

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08110	Cucumber (Gy14) v1	carcgyB0433
Carg08110	Cucurbita maxima (Rimu)	carcmaB0528
Carg08110	Cucurbita maxima (Rimu)	carcmaB0525
Carg08110	Cucurbita maxima (Rimu)	carcmaB0526
Carg08110	Cucurbita moschata (Rifu)	carcmoB0508
Carg08110	Cucurbita moschata (Rifu)	carcmoB0509
Carg08110	Cucurbita moschata (Rifu)	carcmoB0516
Carg08110	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08110	Cucurbita pepo (Zucchini)	carcpeB0526
Carg08110	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08110	Cucurbita pepo (Zucchini)	carcpeB0529
Carg08110	Cucumber (Chinese Long) v2	carcuB0407
Carg08110	Cucumber (Chinese Long) v2	carcuB0409
Carg08110	Cucumber (Chinese Long) v2	carcuB0410
Carg08110	Cucumber (Chinese Long) v3	carcucB0410
Carg08110	Bottle gourd (USVL1VR-Ls)	carlsiB340
Carg08110	Bottle gourd (USVL1VR-Ls)	carlsiB341
Carg08110	Bottle gourd (USVL1VR-Ls)	carlsiB342
Carg08110	Melon (DHL92) v3.5.1	carmeB0386
Carg08110	Melon (DHL92) v3.6.1	carmedB0390
Carg08110	Watermelon (Charleston Gray)	carwcgB0368
Carg08110	Watermelon (97103) v1	carwmB0375
Carg08110	Watermelon (97103) v2	carwmbB0394
Carg08110	Wax gourd	carwgoB0466
Carg08110	Silver-seed gourd	carcarB324
Carg08110	Silver-seed gourd	carcarB401
Carg08110	Silver-seed gourd	carcarB402
Carg08110	Silver-seed gourd	carcarB404
Carg08110	Cucumber (Gy14) v2	carcgybB0388
Carg08110	Cucumber (Gy14) v2	carcgybB0389