CSPI04G00140 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G00140
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ubiquinol-cytochrome C reductase
Location	Chr4 : 96990 .. 97998 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATTTTGAGTATTGTGTGTATATATAAATAAATGAGGAGGGCCATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCCGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAGAGATTGTATTTGAATGCGCTCAAGGTGTTTGTGAATATGCTCAGGAGAGTTTTAAGGGAAGTGAATGCATAAACCATATCTGTTTTGGAAATGTGGGAAGAAGAGGATCTACAAAGAACAAAGGGAAACGCTCAGTCAGGTATGTATATATATATATATATACATATTGTTTTTGTTGTGTGTTTTAATGGTGGCTTATGAATTCTTGGGGAATCAAATTTTGGCTATGTAGTTTCTTTAGTTCTTCAACAATGGCTGAACTAGAGTTTTACATTTACTTCCCTTTCTTTTGTATTTATATATATTCTCTAACCGAACACAACTCAACTAGCCTACCATGTATTAGCAATCAGTTTCAGGTGC

mRNA sequence

ATGAGGAGGGCCATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCCGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAG

Coding sequence (CDS)

ATGAGGAGGGCCATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCCGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAG

Homology

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BLAST of CSPI04G00140 vs. Swiss-Prot
Match: THYN1_RAT (Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-14
Identity = 61/179 (34.08%), Postives = 87/179 (48.60%), Query Frame = 1


Query: 44  EKTMANAVAGDK-RQYWLLKTEPA---------EWSWADQAANDGRTT-WDGVKNKQAQK 103
           EKT      G     YWL+K+EP          ++S  D  A   +TT WDGV+N QA  
Sbjct: 42  EKTTTFKTCGKNLSNYWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWN 101

Query: 104 HLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY---------------SSVDDE---VV 163
            L++MKL D  FFYHS  K   +VG++ + +E Y               SS +D     +
Sbjct: 102 FLRAMKLEDEAFFYHSNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWSM 161

Query: 164 VDVEAVGEMREPVDLKEMKKRMEG-------MKNFALFRQPRLSVVPVTKEIWDKICEL 187
           VDV+ V  M+  + L E+K   +        +K+  LF + RLSV P+T+E +D I  L
Sbjct: 162 VDVQFVRMMKRFISLDELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of CSPI04G00140 vs. Swiss-Prot
Match: THYN1_HUMAN (Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-14
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 1


Query: 58  YWLLKTEP---------AEWSWADQAANDGRTT-WDGVKNKQAQKHLKSMKLGDRCFFYH 117
           +WL+K+EP          ++S  D  A   +TT WDGV+N QA+  L++MKLG+  FFYH
Sbjct: 56  HWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYH 115

Query: 118 SGAKARRVVGVVAVAREWY---------------SSVDDE---VVVDVEAVGEMREPVDL 177
           S  K   + G++ + +E Y               SS +D     +VDV+ V  M+  + L
Sbjct: 116 SNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPL 175

Query: 178 KEMKKRMEG-------MKNFALFRQPRLSVVPVTKEIWDKICEL 187
            E+K   +        +KN  LF + RLS+ P+T+E +D +  L
Sbjct: 176 AELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 219

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BLAST of CSPI04G00140 vs. Swiss-Prot
Match: THYN1_MOUSE (Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-14
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 1


Query: 58  YWLLKTEPA---------EWSWADQAANDGRTT-WDGVKNKQAQKHLKSMKLGDRCFFYH 117
           YWL+K+EP          ++S  D  A   +T  WDGV+N QA+  L++MKL D  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYH 116

Query: 118 SGAKARRVVGVVAVAREWY---------------SSVDDE---VVVDVEAVGEMREPVDL 177
           S  K   +VG++ + +E Y               SS +D+    +VDV+ V  M+  + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPL 176

Query: 178 KEMKKRMEG-------MKNFALFRQPRLSVVPVTKEIWDKICEL 187
           +E+K   +        +K+  LF + RLSV P+T+E +D I  L
Sbjct: 177 EELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of CSPI04G00140 vs. Swiss-Prot
Match: THYN1_CHICK (Thymocyte nuclear protein 1 OS=Gallus gallus GN=THYN1 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-13
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 1


Query: 58  YWLLKTEP---------AEWSWADQAANDGRTT-WDGVKNKQAQKHLKSMKLGDRCFFYH 117
           +WLLK+EP          ++S  D  A   +TT W+GV+N QA+  L++MKLG + FFYH
Sbjct: 73  HWLLKSEPESRLEKGVDVKFSIEDLKAQPNQTTFWEGVRNYQARNFLRAMKLGQQAFFYH 132

Query: 118 SGAKARRVVGVVAVAREWY--------------SSVDDE----VVVDVEAVGEMREPVDL 177
           S  K   +VG+V + +E Y              SS   E     +VDV+ V   +  + L
Sbjct: 133 SNCKEPGIVGIVKIVKEAYPDHTQFDQKDPHYDSSSRKENPKWSMVDVQFVRMTKRFIPL 192

Query: 178 KEMK-----KRMEG--MKNFALFRQPRLSVVPVTKEIWDKICEL 187
            E+K      + +G  +KN  LF + RLS+ P+T+E +D +  L
Sbjct: 193 SEIKTHHLAHKADGGPLKNMMLFSRQRLSIQPLTQEEFDFVLSL 236

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BLAST of CSPI04G00140 vs. Swiss-Prot
Match: THYN1_DANRE (Thymocyte nuclear protein 1 OS=Danio rerio GN=thyn1 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.1e-11
Identity = 55/186 (29.57%), Postives = 90/186 (48.39%), Query Frame = 1


Query: 38  SAVIRSEKTMANAVAGDKRQY--WLLKTEP---------AEWSWADQAANDGRT-TWDGV 97
           SA ++ +    N     K  Y  WL+K+EP          ++   D  A   +T  WDGV
Sbjct: 40  SAAVKGDVENKNDDDACKPSYSRWLMKSEPESRIENGVDVKFGIEDLKALPNQTGCWDGV 99

Query: 98  KNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY----------------SSV 157
           +N QA+  ++ MK+G + FFYHS  K   + G++ + +E Y                S  
Sbjct: 100 RNYQARNFMREMKVGQQAFFYHSNCKEPGIAGLMKIVKEAYVDHTQFDKKDVHYDPSSKA 159

Query: 158 DDEV--VVDVEAVGEMREPVDLKEMKK-----RMEG--MKNFALFRQPRLSVVPVTKEIW 187
           D+    +VDV+    ++  + L E+KK     R++G  +K+ ALF + RLSV P+T E +
Sbjct: 160 DNPKWHMVDVQFERMVKRFIPLAELKKYHLEHRVKGGPLKDMALFTRARLSVQPLTAEEF 219

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BLAST of CSPI04G00140 vs. TrEMBL
Match: A0A0A0KWC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000630 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 1.5e-111
Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 1


Query: 1   MRRAMYLGGNITTIFPPEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWL 60
           MRRAMYLGGNITTIFP EILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWL
Sbjct: 1   MRRAMYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWL 60

Query: 61  LKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA 120
           LKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA
Sbjct: 61  LKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA 120

Query: 121 VAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIW 180
           VAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIW
Sbjct: 121 VAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIW 180

Query: 181 DKICELGGGFEGDGTEGGDGSEE 204
           DKICELGGGFEGDGTEGGDGSEE
Sbjct: 181 DKICELGGGFEGDGTEGGDGSEE 203

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BLAST of CSPI04G00140 vs. TrEMBL
Match: E5GBH2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.6e-97
Identity = 181/202 (89.60%), Postives = 188/202 (93.07%), Query Frame = 1


Query: 1   MRRAMYLGGNITTIFPPEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWL 60
           MRRA+ LG NITTIFPP   P+  SLLPLPLN HK+ +AVIRSEKTMAN VAGDKRQYWL
Sbjct: 1   MRRAINLGANITTIFPPVTSPTSTSLLPLPLNRHKR-NAVIRSEKTMANPVAGDKRQYWL 60

Query: 61  LKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA 120
           LKTEPAEWSWADQAANDGR+ WDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA
Sbjct: 61  LKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA 120

Query: 121 VAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIW 180
           VAREWYSSV+DEVVVDVEAVGEMREPVDLKEMKK MEGMKNFALFRQPRLSVVPV KEIW
Sbjct: 121 VAREWYSSVEDEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIW 180

Query: 181 DKICELGGGFEGDGTEGGDGSE 203
           DKICELGGGFEGDGTEGG GS+
Sbjct: 181 DKICELGGGFEGDGTEGGHGSD 201

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BLAST of CSPI04G00140 vs. TrEMBL
Match: B9S802_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383260 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57
Identity = 108/144 (75.00%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 53  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 112
           G ++QYWLLKTEP EWSW DQA+N G T WDGVKNKQAQK+LK+M + D CFFYHSGAKA
Sbjct: 2   GKEKQYWLLKTEPGEWSWDDQASNGGITNWDGVKNKQAQKNLKAMNIKDLCFFYHSGAKA 61

Query: 113 RRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSV 172
           RRVVGVVAV +EWYS+ DDEVVVDV+AVGEMR PVDLKEMK   +G+ +FALFRQPRLSV
Sbjct: 62  RRVVGVVAVVKEWYSNDDDEVVVDVKAVGEMRRPVDLKEMKND-DGLSDFALFRQPRLSV 121

Query: 173 VPVTKEIWDKICELGGGFEGDGTE 197
           VPV KE+W+++CELG GFEGDG +
Sbjct: 122 VPVPKEVWERVCELGDGFEGDGND 144

[Close]

BLAST of CSPI04G00140 vs. TrEMBL
Match: M5VHY7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb017205mg PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.8e-57
Identity = 112/158 (70.89%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 53  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 112
           G+++ YWLLKTEP EWSW DQAAN G T WDGVKNKQAQK+LKSMKLGD CFFYHSGAKA
Sbjct: 2   GEEKHYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNLKSMKLGDLCFFYHSGAKA 61

Query: 113 RRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSV 172
           RRVVGVVAV REWYS   D+ VVDV+AVGEMR PVDLKEMK   +G+K FALFRQPRLSV
Sbjct: 62  RRVVGVVAVVREWYSDGGDDGVVDVKAVGEMRRPVDLKEMKGE-KGLKGFALFRQPRLSV 121

Query: 173 VPVTKEIWDKICELGGGFEGDGT-------EGGDGSEE 204
           VPV +++W ++C+LGGG++GDGT       +G  G EE
Sbjct: 122 VPVPEDVWIRVCDLGGGYQGDGTVLESHDSDGESGEEE 158

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BLAST of CSPI04G00140 vs. TrEMBL
Match: M5W4D9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012811mg PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-55
Identity = 105/144 (72.92%), Postives = 122/144 (84.72%), Query Frame = 1


Query: 54  DKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKAR 113
           +++QYWLLKTEP EWSW +QAAN G T WDGVKNKQAQKHLKSMKLGD CFFYHSGAKAR
Sbjct: 3   EEKQYWLLKTEPGEWSWENQAANGGVTKWDGVKNKQAQKHLKSMKLGDLCFFYHSGAKAR 62

Query: 114 RVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVV 173
           RVVGVV V REWYS   D+  V V+AVGEMR PVDLKEMK   +G+K FALF+QPRLSVV
Sbjct: 63  RVVGVVTVVREWYSDSGDDGTVAVKAVGEMRRPVDLKEMKGE-KGLKGFALFKQPRLSVV 122

Query: 174 PVTKEIWDKICELGGGFEGDGTEG 198
           PV +++W ++C+LGGG++GDGT G
Sbjct: 123 PVPEDVWIRVCDLGGGYQGDGTVG 145

[Close]

BLAST of CSPI04G00140 vs. TAIR10
Match: AT2G14660.1 (AT2G14660.1 unknown protein)

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-49
Identity = 99/157 (63.06%), Postives = 121/157 (77.07%), Query Frame = 1


Query: 53  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 112
           G  ++YWLLKTEP EWSW+DQ +N G + WDGVKNKQAQK+LKSM LGD CFFYHSG K+
Sbjct: 2   GKTKRYWLLKTEPNEWSWSDQESNGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTKS 61

Query: 113 RRVVGVVAVAREWYS----SVDDEVVVDVEAVGEMREPVDLKEMKKRMEGM--KNFALFR 172
           R VVGVV V+REWY+     V+ E  VDV+A+GEMR+ VDLKEMK   +G+  K F LFR
Sbjct: 62  RCVVGVVEVSREWYTDDAEGVEGEGAVDVKAIGEMRKCVDLKEMKGD-KGIITKGFVLFR 121

Query: 173 QPRLSVVPVTKEIWDKICELGGGFEGDGTEGGDGSEE 204
           QPRLSVVPV +++W+ ICELG GF GDG E  + S++
Sbjct: 122 QPRLSVVPVEEDVWNMICELGNGFCGDGKEDCESSDD 157

[Close]

BLAST of CSPI04G00140 vs. NCBI nr
Match: gi|778689136|ref|XP_004150262.2| (PREDICTED: thymocyte nuclear protein 1 [Cucumis sativus])

HSP 1 Score: 410.2 bits (1053), Expect = 2.1e-111
Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 1


Query: 1   MRRAMYLGGNITTIFPPEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWL 60
           MRRAMYLGGNITTIFP EILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWL
Sbjct: 1   MRRAMYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWL 60

Query: 61  LKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA 120
           LKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA
Sbjct: 61  LKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA 120

Query: 121 VAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIW 180
           VAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIW
Sbjct: 121 VAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIW 180

Query: 181 DKICELGGGFEGDGTEGGDGSEE 204
           DKICELGGGFEGDGTEGGDGSEE
Sbjct: 181 DKICELGGGFEGDGTEGGDGSEE 203

[Close]

BLAST of CSPI04G00140 vs. NCBI nr
Match: gi|659108843|ref|XP_008454415.1| (PREDICTED: thymocyte nuclear protein 1 [Cucumis melo])

HSP 1 Score: 363.6 bits (932), Expect = 2.2e-97
Identity = 181/202 (89.60%), Postives = 188/202 (93.07%), Query Frame = 1


Query: 1   MRRAMYLGGNITTIFPPEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWL 60
           MRRA+ LG NITTIFPP   P+  SLLPLPLN HK+ +AVIRSEKTMAN VAGDKRQYWL
Sbjct: 1   MRRAINLGANITTIFPPVTSPTSTSLLPLPLNRHKR-NAVIRSEKTMANPVAGDKRQYWL 60

Query: 61  LKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA 120
           LKTEPAEWSWADQAANDGR+ WDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA
Sbjct: 61  LKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVA 120

Query: 121 VAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIW 180
           VAREWYSSV+DEVVVDVEAVGEMREPVDLKEMKK MEGMKNFALFRQPRLSVVPV KEIW
Sbjct: 121 VAREWYSSVEDEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIW 180

Query: 181 DKICELGGGFEGDGTEGGDGSE 203
           DKICELGGGFEGDGTEGG GS+
Sbjct: 181 DKICELGGGFEGDGTEGGHGSD 201

[Close]

BLAST of CSPI04G00140 vs. NCBI nr
Match: gi|255562220|ref|XP_002522118.1| (PREDICTED: thymocyte nuclear protein 1 [Ricinus communis])

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 108/144 (75.00%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 53  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 112
           G ++QYWLLKTEP EWSW DQA+N G T WDGVKNKQAQK+LK+M + D CFFYHSGAKA
Sbjct: 2   GKEKQYWLLKTEPGEWSWDDQASNGGITNWDGVKNKQAQKNLKAMNIKDLCFFYHSGAKA 61

Query: 113 RRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSV 172
           RRVVGVVAV +EWYS+ DDEVVVDV+AVGEMR PVDLKEMK   +G+ +FALFRQPRLSV
Sbjct: 62  RRVVGVVAVVKEWYSNDDDEVVVDVKAVGEMRRPVDLKEMKND-DGLSDFALFRQPRLSV 121

Query: 173 VPVTKEIWDKICELGGGFEGDGTE 197
           VPV KE+W+++CELG GFEGDG +
Sbjct: 122 VPVPKEVWERVCELGDGFEGDGND 144

[Close]

BLAST of CSPI04G00140 vs. NCBI nr
Match: gi|595791543|ref|XP_007199520.1| (hypothetical protein PRUPE_ppb017205mg [Prunus persica])

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 112/158 (70.89%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 53  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 112
           G+++ YWLLKTEP EWSW DQAAN G T WDGVKNKQAQK+LKSMKLGD CFFYHSGAKA
Sbjct: 2   GEEKHYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNLKSMKLGDLCFFYHSGAKA 61

Query: 113 RRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSV 172
           RRVVGVVAV REWYS   D+ VVDV+AVGEMR PVDLKEMK   +G+K FALFRQPRLSV
Sbjct: 62  RRVVGVVAVVREWYSDGGDDGVVDVKAVGEMRRPVDLKEMKGE-KGLKGFALFRQPRLSV 121

Query: 173 VPVTKEIWDKICELGGGFEGDGT-------EGGDGSEE 204
           VPV +++W ++C+LGGG++GDGT       +G  G EE
Sbjct: 122 VPVPEDVWIRVCDLGGGYQGDGTVLESHDSDGESGEEE 158

[Close]

BLAST of CSPI04G00140 vs. NCBI nr
Match: gi|694414231|ref|XP_009335344.1| (PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri])

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 115/162 (70.99%), Postives = 131/162 (80.86%), Query Frame = 1


Query: 44  EKTMANAVAGDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRC 103
           EKT   ++A +K QYWLLKTEP EWSW DQAAN G T WDGVKNKQAQK+LKSMKL D C
Sbjct: 45  EKTPTPSMAAEK-QYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKYLKSMKLSDLC 104

Query: 104 FFYHSGAKARRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFA 163
           FFYHSG KARRVVGVV+V REWYS   D+ VVDV+AVGEMR PVDLKEM KR +G+K FA
Sbjct: 105 FFYHSGTKARRVVGVVSVLREWYSEGGDDAVVDVKAVGEMRRPVDLKEM-KRDQGLKGFA 164

Query: 164 LFRQPRLSVVPVTKEIWDKICELGGGFEGDGT---EGGDGSE 203
           LFRQPRLSVVPV++++W KIC+LG G+EGDG    + G G E
Sbjct: 165 LFRQPRLSVVPVSEDVWMKICDLGSGYEGDGNAFEDDGSGGE 204

The following BLAST results are available for this feature:

BLAST of CSPI04G00140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THYN1_RAT	3.1e-14	34.08	Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1	[more]
THYN1_HUMAN	4.0e-14	32.93	Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1	[more]
THYN1_MOUSE	5.3e-14	34.15	Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1	[more]
THYN1_CHICK	2.0e-13	34.15	Thymocyte nuclear protein 1 OS=Gallus gallus GN=THYN1 PE=1 SV=1	[more]
THYN1_DANRE	7.1e-11	29.57	Thymocyte nuclear protein 1 OS=Danio rerio GN=thyn1 PE=2 SV=1	[more]

BLAST of CSPI04G00140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWC0_CUCSA	1.5e-111	99.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000630 PE=4 SV=1	[more]
E5GBH2_CUCME	1.6e-97	89.60	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
B9S802_RICCO	1.6e-57	75.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383260 PE=4 SV=1	[more]
M5VHY7_PRUPE	7.8e-57	70.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb017205mg PE=4 SV=1	[more]
M5W4D9_PRUPE	2.5e-55	72.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012811mg PE=4 SV=1	[more]

BLAST of CSPI04G00140 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14660.1	1.1e-49	63.06	unknown protein	[more]

BLAST of CSPI04G00140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778689136\|ref\|XP_004150262.2\|	2.1e-111	99.51	PREDICTED: thymocyte nuclear protein 1 [Cucumis sativus]	[more]
gi\|659108843\|ref\|XP_008454415.1\|	2.2e-97	89.60	PREDICTED: thymocyte nuclear protein 1 [Cucumis melo]	[more]
gi\|255562220\|ref\|XP_002522118.1\|	2.3e-57	75.00	PREDICTED: thymocyte nuclear protein 1 [Ricinus communis]	[more]
gi\|595791543\|ref\|XP_007199520.1\|	1.1e-56	70.89	hypothetical protein PRUPE_ppb017205mg [Prunus persica]	[more]
gi\|694414231\|ref\|XP_009335344.1\|	1.1e-56	70.99	PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002740	EVE_domain
IPR015947	PUA-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G00140.1	CSPI04G00140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002740	EVE domain	GENE3D	G3DSA:3.10.590.10		coord: 57..186 score: 7.8
IPR002740	EVE domain	PFAM	PF01878	EVE	coord: 57..186 score: 1.5
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 54..188 score: 2.4
None	No IPR available	PANTHER	PTHR14087	FAMILY NOT NAMED	coord: 50..203 score: 1.2
None	No IPR available	PANTHER	PTHR14087:SF9	SUBFAMILY NOT NAMED	coord: 50..203 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G00140	Cla006451	Watermelon (97103) v1	cpiwmB291
CSPI04G00140	Csa4G000630	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G00140	MELO3C018021	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G00140	ClCG10G010070	Watermelon (Charleston Gray)	cpiwcgB280
CSPI04G00140	MELO3C018021.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G00140	CsaV3_4G000110	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G00140	Cla97C10G193070	Watermelon (97103) v2	cpiwmbB278
CSPI04G00140	Bhi11G000917	Wax gourd	cpiwgoB358
CSPI04G00140	Cucsa.298450	Cucumber (Gy14) v1	cgycpiB447
CSPI04G00140	CmaCh04G004370	Cucurbita maxima (Rimu)	cmacpiB715
CSPI04G00140	CmoCh04G004670	Cucurbita moschata (Rifu)	cmocpiB709
CSPI04G00140	CsGy4G000150	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G00140	Carg08110	Silver-seed gourd	carcpiB0407

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G00140	Wild cucumber (PI 183967)	cpicpiB151
CSPI04G00140	Wild cucumber (PI 183967)	cpicpiB169
CSPI04G00140	Cucumber (Gy14) v1	cgycpiB522
CSPI04G00140	Cucurbita maxima (Rimu)	cmacpiB338
CSPI04G00140	Cucurbita moschata (Rifu)	cmocpiB329
CSPI04G00140	Cucumber (Chinese Long) v2	cpicuB188
CSPI04G00140	Cucumber (Chinese Long) v2	cpicuB207
CSPI04G00140	Melon (DHL92) v3.5.1	cpimeB276
CSPI04G00140	Melon (DHL92) v3.5.1	cpimeB309
CSPI04G00140	Cucurbita pepo (Zucchini)	cpecpiB221
CSPI04G00140	Cucurbita pepo (Zucchini)	cpecpiB399
CSPI04G00140	Bottle gourd (USVL1VR-Ls)	cpilsiB274
CSPI04G00140	Cucumber (Gy14) v2	cgybcpiB179
CSPI04G00140	Silver-seed gourd	carcpiB0328
CSPI04G00140	Cucumber (Chinese Long) v3	cpicucB224
CSPI04G00140	Watermelon (97103) v2	cpiwmbB296