CmoCh04G004670 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G004670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Thymocyte nuclear protein 1
Location	Cmo_Chr04 : 2332800 .. 2333276 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACGCGGCCGCCGGAGACAAAAAACAGTTCTGGCTTCTGAAGACGGAACCAGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAATGGCGGCCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCGCAGAAGTATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCATCGTCGGCGTGGTTTCCGTCGCACGGGAGTGGTATTTGGAGGGCGATGGCGGCGACGCTGTCGTCGACGTCGAGGCGGTCGGGGAAATGAGAGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGATGAAGGATTTCGCGCTGTTTCGGCAACCTAGACTGTCTGTTGTGCCGGTAGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACAGATTGCCGCCATGGGAGTGAGGAATAG

mRNA sequence

ATGGCTGACGCGGCCGCCGGAGACAAAAAACAGTTCTGGCTTCTGAAGACGGAACCAGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAATGGCGGCCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCGCAGAAGTATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCATCGTCGGCGTGGTTTCCGTCGCACGGGAGTGGTATTTGGAGGGCGATGGCGGCGACGCTGTCGTCGACGTCGAGGCGGTCGGGGAAATGAGAGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGATGAAGGATTTCGCGCTGTTTCGGCAACCTAGACTGTCTGTTGTGCCGGTAGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACAGATTGCCGCCATGGGAGTGAGGAATAG

Coding sequence (CDS)

ATGGCTGACGCGGCCGCCGGAGACAAAAAACAGTTCTGGCTTCTGAAGACGGAACCAGCGGAGTGGTCGTGGGCCGACCAAGCCGCGAATGGCGGCCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCGCAGAAGTATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCATCGTCGGCGTGGTTTCCGTCGCACGGGAGTGGTATTTGGAGGGCGATGGCGGCGACGCTGTCGTCGACGTCGAGGCGGTCGGGGAAATGAGAGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATCGAAGGGATGAAGGATTTCGCGCTGTTTCGGCAACCTAGACTGTCTGTTGTGCCGGTAGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACAGATTGCCGCCATGGGAGTGAGGAATAG

Homology

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BLAST of CmoCh04G004670 vs. Swiss-Prot
Match: THYN1_MOUSE (Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = 1


Query: 12  FWLLKTEPA---------EWSWADQAANGGRTK-WDGVKNKQAQKYLKSMKLGDLCFFYH 71
           +WL+K+EP          ++S  D  A   +T  WDGV+N QA+ +L++MKL D  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYH 116

Query: 72  SGAKARRIVGVVSVAREWY-----------------LEGDGGDAVVDVEAVGEMREAVDL 131
           S  K   IVG++ + +E Y                  E D   ++VDV+ V  M+  + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPL 176

Query: 132 KEMK------KGIEG-MKDFALFRQPRLSVVPVAKEIWEKICEL 142
           +E+K      K   G +K   LF + RLSV P+ +E ++ I  L
Sbjct: 177 EELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of CmoCh04G004670 vs. Swiss-Prot
Match: THYN1_RAT (Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 55/164 (33.54%), Postives = 81/164 (49.39%), Query Frame = 1


Query: 12  FWLLKTEPA---------EWSWAD-QAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYH 71
           +WL+K+EP          ++S  D QA     T WDGV+N QA  +L++MKL D  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWNFLRAMKLEDEAFFYH 116

Query: 72  SGAKARRIVGVVSVAREWY-----------------LEGDGGDAVVDVEAVGEMREAVDL 131
           S  K   IVG++ + +E Y                  E +   ++VDV+ V  M+  + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWSMVDVQFVRMMKRFISL 176

Query: 132 KEMK------KGIEG-MKDFALFRQPRLSVVPVAKEIWEKICEL 142
            E+K      K   G +K   LF + RLSV P+ +E ++ I  L
Sbjct: 177 DELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of CmoCh04G004670 vs. Swiss-Prot
Match: THYN1_CHICK (Thymocyte nuclear protein 1 OS=Gallus gallus GN=THYN1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-12
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 1


Query: 13  WLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKYLKSMKLGDLCFFYHS 72
           WLLK+EP          ++S  D  A   +T  W+GV+N QA+ +L++MKLG   FFYHS
Sbjct: 74  WLLKSEPESRLEKGVDVKFSIEDLKAQPNQTTFWEGVRNYQARNFLRAMKLGQQAFFYHS 133

Query: 73  GAKARRIVGVVSVAREWYLEGDGGD-----------------AVVDVEAVGEMREAVDLK 132
             K   IVG+V + +E Y +    D                 ++VDV+ V   +  + L 
Sbjct: 134 NCKEPGIVGIVKIVKEAYPDHTQFDQKDPHYDSSSRKENPKWSMVDVQFVRMTKRFIPLS 193

Query: 133 EMK------KGIEG-MKDFALFRQPRLSVVPVAKEIWEKICEL 142
           E+K      K   G +K+  LF + RLS+ P+ +E ++ +  L
Sbjct: 194 EIKTHHLAHKADGGPLKNMMLFSRQRLSIQPLTQEEFDFVLSL 236

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BLAST of CmoCh04G004670 vs. Swiss-Prot
Match: THYN1_DANRE (Thymocyte nuclear protein 1 OS=Danio rerio GN=thyn1 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 1


Query: 13  WLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKYLKSMKLGDLCFFYHS 72
           WL+K+EP          ++   D  A   +T  WDGV+N QA+ +++ MK+G   FFYHS
Sbjct: 63  WLMKSEPESRIENGVDVKFGIEDLKALPNQTGCWDGVRNYQARNFMREMKVGQQAFFYHS 122

Query: 73  GAKARRIVGVVSVAREWYLEGDGGDA-----------------VVDVEAVGEMREAVDLK 132
             K   I G++ + +E Y++    D                  +VDV+    ++  + L 
Sbjct: 123 NCKEPGIAGLMKIVKEAYVDHTQFDKKDVHYDPSSKADNPKWHMVDVQFERMVKRFIPLA 182

Query: 133 EMKK-----GIEG--MKDFALFRQPRLSVVPVAKEIWEKICEL 142
           E+KK      ++G  +KD ALF + RLSV P+  E +E +  L
Sbjct: 183 ELKKYHLEHRVKGGPLKDMALFTRARLSVQPLTAEEFEFVLSL 225

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BLAST of CmoCh04G004670 vs. Swiss-Prot
Match: THYN1_HUMAN (Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-09
Identity = 47/163 (28.83%), Postives = 79/163 (48.47%), Query Frame = 1


Query: 13  WLLKTEP---------AEWSWADQAANGGRTK-WDGVKNKQAQKYLKSMKLGDLCFFYHS 72
           WL+K+EP          ++S  D  A   +T  WDGV+N QA+ +L++MKLG+  FFYHS
Sbjct: 57  WLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHS 116

Query: 73  GAKARRIVGVVSVAREWY---LEGDGGDAVVDVEAVGE--------------MREAVDLK 132
             K   I G++ + +E Y    + +  +   D  +  +              M+  + L 
Sbjct: 117 NCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLA 176

Query: 133 EMK------KGIEG-MKDFALFRQPRLSVVPVAKEIWEKICEL 142
           E+K      K   G +K+  LF + RLS+ P+ +E ++ +  L
Sbjct: 177 ELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 219

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BLAST of CmoCh04G004670 vs. TrEMBL
Match: E5GBH2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.7e-70
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 1


Query: 1   MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60
           MA+  AGDK+Q+WLLKTEPAEWSWADQAAN GR+KWDGVKNKQAQK+LKSMKLGD CFFY
Sbjct: 46  MANPVAGDKRQYWLLKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFY 105

Query: 61  HSGAKARRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120
           HSGAKARR+VGVV+VAREWY   +  + VVDVEAVGEMRE VDLKEMKKG+EGMK+FALF
Sbjct: 106 HSGAKARRVVGVVAVAREWYSSVE-DEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALF 165

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 158
           RQPRLSVVPVAKEIW+KICELGGGFEGDGT+  HGS+
Sbjct: 166 RQPRLSVVPVAKEIWDKICELGGGFEGDGTEGGHGSD 201

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BLAST of CmoCh04G004670 vs. TrEMBL
Match: A0A0A0KWC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000630 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.8e-69
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 1


Query: 1   MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60
           MA+A AGDK+Q+WLLKTEPAEWSWADQAAN GRT WDGVKNKQAQK+LKSMKLGD CFFY
Sbjct: 47  MANAVAGDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFY 106

Query: 61  HSGAKARRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120
           HSGAKARR+VGVV+VAREWY   D  + VVDVEAVGEMRE VDLKEMKK +EGMK+FALF
Sbjct: 107 HSGAKARRVVGVVAVAREWYSSVD-DEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALF 166

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 159
           RQPRLSVVPV KEIW+KICELGGGFEGDGT+   GSEE
Sbjct: 167 RQPRLSVVPVTKEIWDKICELGGGFEGDGTEGGDGSEE 203

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BLAST of CmoCh04G004670 vs. TrEMBL
Match: M5VHY7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb017205mg PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.4e-59
Identity = 110/144 (76.39%), Postives = 127/144 (88.19%), Query Frame = 1


Query: 7   GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 66
           G++K +WLLKTEP EWSW DQAANGG TKWDGVKNKQAQK LKSMKLGDLCFFYHSGAKA
Sbjct: 2   GEEKHYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNLKSMKLGDLCFFYHSGAKA 61

Query: 67  RRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLS 126
           RR+VGVV+V REWY +G G D VVDV+AVGEMR  VDLKEM KG +G+K FALFRQPRLS
Sbjct: 62  RRVVGVVAVVREWYSDG-GDDGVVDVKAVGEMRRPVDLKEM-KGEKGLKGFALFRQPRLS 121

Query: 127 VVPVAKEIWEKICELGGGFEGDGT 151
           VVPV +++W ++C+LGGG++GDGT
Sbjct: 122 VVPVPEDVWIRVCDLGGGYQGDGT 143

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BLAST of CmoCh04G004670 vs. TrEMBL
Match: W9QZP9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003344 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-57
Identity = 111/151 (73.51%), Postives = 126/151 (83.44%), Query Frame = 1


Query: 7   GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 66
           G +KQ+WLLKTE  EWSW DQAANGG +KWDGVKNKQAQK LKSM LGDLCFFYHSGA+A
Sbjct: 2   GKEKQYWLLKTEAGEWSWEDQAANGGLSKWDGVKNKQAQKNLKSMSLGDLCFFYHSGARA 61

Query: 67  RRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLS 126
           RR+VGVV V REWY EG G   VVDV+AVGEMR+AVDL EM KG +G+K FAL RQPRLS
Sbjct: 62  RRVVGVVEVTREWYSEG-GDAVVVDVKAVGEMRKAVDLTEM-KGDQGLKGFALLRQPRLS 121

Query: 127 VVPVAKEIWEKICELGGGFEGDGTDCRHGSE 158
           VVPV +++WE+ICELGGGFEGDG +   G +
Sbjct: 122 VVPVPRDVWERICELGGGFEGDGKEVVDGDD 150

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BLAST of CmoCh04G004670 vs. TrEMBL
Match: B9HN19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08910g PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.1e-57
Identity = 107/145 (73.79%), Postives = 125/145 (86.21%), Query Frame = 1


Query: 7   GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 66
           G +K++WLLKTEP EWSW DQA+NGG + WDGVKNKQAQK LK+MKL DLCFFYHSG+ A
Sbjct: 2   GKEKRYWLLKTEPGEWSWDDQASNGGISNWDGVKNKQAQKNLKAMKLNDLCFFYHSGSNA 61

Query: 67  RRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLS 126
           RR+VGVV+V REWY EG  G+ VVDV+AVGEMR  +DLKE+K G EG+K F LFRQPRLS
Sbjct: 62  RRVVGVVTVVREWYDEG--GEGVVDVKAVGEMRRPLDLKELK-GDEGLKGFQLFRQPRLS 121

Query: 127 VVPVAKEIWEKICELGGGFEGDGTD 152
           VVPV+KE+WE++CELGGGFEGDG D
Sbjct: 122 VVPVSKEVWERVCELGGGFEGDGKD 143

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BLAST of CmoCh04G004670 vs. TAIR10
Match: AT2G14660.1 (AT2G14660.1 unknown protein)

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-54
Identity = 105/158 (66.46%), Postives = 121/158 (76.58%), Query Frame = 1


Query: 7   GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 66
           G  K++WLLKTEP EWSW+DQ +NGG +KWDGVKNKQAQK LKSM LGDLCFFYHSG K+
Sbjct: 2   GKTKRYWLLKTEPNEWSWSDQESNGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTKS 61

Query: 67  RRIVGVVSVAREWY---LEGDGGDAVVDVEAVGEMREAVDLKEMK--KGIEGMKDFALFR 126
           R +VGVV V+REWY    EG  G+  VDV+A+GEMR+ VDLKEMK  KGI   K F LFR
Sbjct: 62  RCVVGVVEVSREWYTDDAEGVEGEGAVDVKAIGEMRKCVDLKEMKGDKGII-TKGFVLFR 121

Query: 127 QPRLSVVPVAKEIWEKICELGGGFEGDG-TDCRHGSEE 159
           QPRLSVVPV +++W  ICELG GF GDG  DC    +E
Sbjct: 122 QPRLSVVPVEEDVWNMICELGNGFCGDGKEDCESSDDE 158

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BLAST of CmoCh04G004670 vs. NCBI nr
Match: gi|659108843|ref|XP_008454415.1| (PREDICTED: thymocyte nuclear protein 1 [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 5.2e-70
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 1


Query: 1   MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60
           MA+  AGDK+Q+WLLKTEPAEWSWADQAAN GR+KWDGVKNKQAQK+LKSMKLGD CFFY
Sbjct: 46  MANPVAGDKRQYWLLKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFY 105

Query: 61  HSGAKARRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120
           HSGAKARR+VGVV+VAREWY   +  + VVDVEAVGEMRE VDLKEMKKG+EGMK+FALF
Sbjct: 106 HSGAKARRVVGVVAVAREWYSSVE-DEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALF 165

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 158
           RQPRLSVVPVAKEIW+KICELGGGFEGDGT+  HGS+
Sbjct: 166 RQPRLSVVPVAKEIWDKICELGGGFEGDGTEGGHGSD 201

[Close]

BLAST of CmoCh04G004670 vs. NCBI nr
Match: gi|778689136|ref|XP_004150262.2| (PREDICTED: thymocyte nuclear protein 1 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 2.6e-69
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 1


Query: 1   MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60
           MA+A AGDK+Q+WLLKTEPAEWSWADQAAN GRT WDGVKNKQAQK+LKSMKLGD CFFY
Sbjct: 47  MANAVAGDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFY 106

Query: 61  HSGAKARRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120
           HSGAKARR+VGVV+VAREWY   D  + VVDVEAVGEMRE VDLKEMKK +EGMK+FALF
Sbjct: 107 HSGAKARRVVGVVAVAREWYSSVD-DEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALF 166

Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSEE 159
           RQPRLSVVPV KEIW+KICELGGGFEGDGT+   GSEE
Sbjct: 167 RQPRLSVVPVTKEIWDKICELGGGFEGDGTEGGDGSEE 203

[Close]

BLAST of CmoCh04G004670 vs. NCBI nr
Match: gi|470147391|ref|XP_004309298.1| (PREDICTED: thymocyte nuclear protein 1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 238.4 bits (607), Expect = 8.4e-60
Identity = 109/143 (76.22%), Postives = 123/143 (86.01%), Query Frame = 1


Query: 7   GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 66
           G +KQ+WLLKTEP EWSW DQAAN G TKWDGVKNKQAQKYLKSM L DLCFFYHSG KA
Sbjct: 2   GKEKQYWLLKTEPGEWSWEDQAANNGITKWDGVKNKQAQKYLKSMNLDDLCFFYHSGGKA 61

Query: 67  RRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLS 126
           RR+VGVV V REWYLEG+ GD  VDV+A+GEMR  +DLKEM KG EG+K F LFRQPRLS
Sbjct: 62  RRVVGVVKVVREWYLEGEDGDGAVDVKAIGEMRRPIDLKEM-KGEEGLKGFVLFRQPRLS 121

Query: 127 VVPVAKEIWEKICELGGGFEGDG 150
           VVPV++++W K+C+LGGGFEGDG
Sbjct: 122 VVPVSEDVWLKVCDLGGGFEGDG 143

[Close]

BLAST of CmoCh04G004670 vs. NCBI nr
Match: gi|645261374|ref|XP_008236263.1| (PREDICTED: thymocyte nuclear protein 1-like [Prunus mume])

HSP 1 Score: 236.9 bits (603), Expect = 2.4e-59
Identity = 114/158 (72.15%), Postives = 133/158 (84.18%), Query Frame = 1


Query: 8   DKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKAR 67
           ++KQ+WLLKTEP EWSW DQAANGG TKWDGVKNKQAQK+LKSMKLGDLCFFYHSGAKAR
Sbjct: 3   EEKQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKHLKSMKLGDLCFFYHSGAKAR 62

Query: 68  RIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLSV 127
           R+VGVV+V REWY +G GGD +VDV+AVGEMR  VDLKEM KG +G+K FALFRQPRLSV
Sbjct: 63  RVVGVVTVVREWYSDG-GGDGMVDVKAVGEMRRPVDLKEM-KGEKGLKSFALFRQPRLSV 122

Query: 128 VPVAKEIWEKICELGGGFEGD-------GTDCRHGSEE 159
           VPV +++W ++C+LGGG+EGD       G+D   G EE
Sbjct: 123 VPVPEDVWIRVCDLGGGYEGDGNLFENNGSDGESGDEE 158

[Close]

BLAST of CmoCh04G004670 vs. NCBI nr
Match: gi|470106834|ref|XP_004289763.1| (PREDICTED: thymocyte nuclear protein 1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 236.9 bits (603), Expect = 2.4e-59
Identity = 109/143 (76.22%), Postives = 123/143 (86.01%), Query Frame = 1


Query: 7   GDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFYHSGAKA 66
           G +KQ+WLLKTEP EWSW DQAAN G TKWDGVKNKQAQKYLKSM L DLCFFYHSGAKA
Sbjct: 2   GKEKQYWLLKTEPGEWSWEDQAANNGITKWDGVKNKQAQKYLKSMNLDDLCFFYHSGAKA 61

Query: 67  RRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALFRQPRLS 126
           RR+VGVV V REWY EG+ GD  VDV+A+GEMR  +DLKEM KG EG+K FALFRQPRLS
Sbjct: 62  RRVVGVVKVVREWYSEGENGDGAVDVKAIGEMRRPIDLKEM-KGEEGLKGFALFRQPRLS 121

Query: 127 VVPVAKEIWEKICELGGGFEGDG 150
           VVPV++++W K+C+LGGGF GDG
Sbjct: 122 VVPVSEDVWLKVCDLGGGFVGDG 143

The following BLAST results are available for this feature:

BLAST of CmoCh04G004670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THYN1_MOUSE	2.6e-13	33.54	Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1	[more]
THYN1_RAT	2.2e-12	33.54	Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1	[more]
THYN1_CHICK	3.8e-12	31.90	Thymocyte nuclear protein 1 OS=Gallus gallus GN=THYN1 PE=1 SV=1	[more]
THYN1_DANRE	1.1e-11	30.67	Thymocyte nuclear protein 1 OS=Danio rerio GN=thyn1 PE=2 SV=1	[more]
THYN1_HUMAN	4.0e-09	28.83	Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1	[more]

BLAST of CmoCh04G004670 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBH2_CUCME	3.7e-70	82.80	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KWC0_CUCSA	1.8e-69	82.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000630 PE=4 SV=1	[more]
M5VHY7_PRUPE	8.4e-59	76.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb017205mg PE=4 SV=1	[more]
W9QZP9_9ROSA	1.6e-57	73.51	Uncharacterized protein OS=Morus notabilis GN=L484_003344 PE=4 SV=1	[more]
B9HN19_POPTR	6.1e-57	73.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08910g PE=4 SV=1	[more]

BLAST of CmoCh04G004670 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14660.1	2.5e-54	66.46	unknown protein	[more]

BLAST of CmoCh04G004670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108843\|ref\|XP_008454415.1\|	5.2e-70	82.80	PREDICTED: thymocyte nuclear protein 1 [Cucumis melo]	[more]
gi\|778689136\|ref\|XP_004150262.2\|	2.6e-69	82.91	PREDICTED: thymocyte nuclear protein 1 [Cucumis sativus]	[more]
gi\|470147391\|ref\|XP_004309298.1\|	8.4e-60	76.22	PREDICTED: thymocyte nuclear protein 1-like [Fragaria vesca subsp. vesca]	[more]
gi\|645261374\|ref\|XP_008236263.1\|	2.4e-59	72.15	PREDICTED: thymocyte nuclear protein 1-like [Prunus mume]	[more]
gi\|470106834\|ref\|XP_004289763.1\|	2.4e-59	76.22	PREDICTED: thymocyte nuclear protein 1-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002740	EVE_domain
IPR015947	PUA-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G004670.1	CmoCh04G004670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002740	EVE domain	GENE3D	G3DSA:3.10.590.10		coord: 11..141 score: 8.2
IPR002740	EVE domain	PFAM	PF01878	EVE	coord: 11..141 score: 1.0
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 9..143 score: 4.23
None	No IPR available	PANTHER	PTHR14087	FAMILY NOT NAMED	coord: 4..151 score: 2.4
None	No IPR available	PANTHER	PTHR14087:SF9	SUBFAMILY NOT NAMED	coord: 4..151 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G004670	Cucsa.298450	Cucumber (Gy14) v1	cgycmoB0819
CmoCh04G004670	CmaCh04G004370	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G004670	Cla006451	Watermelon (97103) v1	cmowmB648
CmoCh04G004670	Csa4G000630	Cucumber (Chinese Long) v2	cmocuB701
CmoCh04G004670	MELO3C018021	Melon (DHL92) v3.5.1	cmomeB692
CmoCh04G004670	ClCG10G010070	Watermelon (Charleston Gray)	cmowcgB610
CmoCh04G004670	CSPI04G00140	Wild cucumber (PI 183967)	cmocpiB709
CmoCh04G004670	MELO3C018021.2	Melon (DHL92) v3.6.1	cmomedB786
CmoCh04G004670	CsaV3_4G000110	Cucumber (Chinese Long) v3	cmocucB0829
CmoCh04G004670	Cla97C10G193070	Watermelon (97103) v2	cmowmbB684
CmoCh04G004670	Bhi11G000917	Wax gourd	cmowgoB0810
CmoCh04G004670	CsGy4G000150	Cucumber (Gy14) v2	cgybcmoB517

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G004670	Wax gourd	cmowgoB0916
CmoCh04G004670	Cucurbita moschata (Rifu)	cmocmoB125
CmoCh04G004670	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G004670	Cucurbita moschata (Rifu)	cmocmoB395
CmoCh04G004670	Cucurbita moschata (Rifu)	cmocmoB477
CmoCh04G004670	Cucumber (Gy14) v1	cgycmoB0228
CmoCh04G004670	Cucumber (Gy14) v1	cgycmoB0632
CmoCh04G004670	Cucurbita maxima (Rimu)	cmacmoB156
CmoCh04G004670	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G004670	Cucurbita maxima (Rimu)	cmacmoB530
CmoCh04G004670	Wild cucumber (PI 183967)	cmocpiB777
CmoCh04G004670	Cucumber (Chinese Long) v2	cmocuB713
CmoCh04G004670	Cucumber (Chinese Long) v2	cmocuB766
CmoCh04G004670	Cucumber (Chinese Long) v2	cmocuB769
CmoCh04G004670	Melon (DHL92) v3.5.1	cmomeB665
CmoCh04G004670	Melon (DHL92) v3.5.1	cmomeB703
CmoCh04G004670	Watermelon (Charleston Gray)	cmowcgB645
CmoCh04G004670	Watermelon (97103) v1	cmowmB721
CmoCh04G004670	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G004670	Cucurbita pepo (Zucchini)	cmocpeB672
CmoCh04G004670	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G004670	Cucurbita pepo (Zucchini)	cmocpeB703
CmoCh04G004670	Bottle gourd (USVL1VR-Ls)	cmolsiB627
CmoCh04G004670	Bottle gourd (USVL1VR-Ls)	cmolsiB646
CmoCh04G004670	Bottle gourd (USVL1VR-Ls)	cmolsiB650
CmoCh04G004670	Bottle gourd (USVL1VR-Ls)	cmolsiB666
CmoCh04G004670	Cucumber (Gy14) v2	cgybcmoB527
CmoCh04G004670	Cucumber (Gy14) v2	cgybcmoB822
CmoCh04G004670	Cucumber (Gy14) v2	cgybcmoB948
CmoCh04G004670	Melon (DHL92) v3.6.1	cmomedB751
CmoCh04G004670	Melon (DHL92) v3.6.1	cmomedB783
CmoCh04G004670	Melon (DHL92) v3.6.1	cmomedB800
CmoCh04G004670	Silver-seed gourd	carcmoB0403
CmoCh04G004670	Silver-seed gourd	carcmoB0514
CmoCh04G004670	Silver-seed gourd	carcmoB0616
CmoCh04G004670	Silver-seed gourd	carcmoB0999
CmoCh04G004670	Cucumber (Chinese Long) v3	cmocucB0839
CmoCh04G004670	Cucumber (Chinese Long) v3	cmocucB0905
CmoCh04G004670	Cucumber (Chinese Long) v3	cmocucB0910
CmoCh04G004670	Watermelon (97103) v2	cmowmbB717