Cucsa.298450 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.298450
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ubiquinol-cytochrome C reductase
Location	scaffold02901 : 88828 .. 89758 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCTGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAGAGATTGTATTTGAATGCGCTCAAGGTGTTTGTGAATATGCTCAGGAGAGTTTTAAGGGAAGTGAATGCATAAACCATATCTGTTTTGGAAATGTGGGAAGAAGAGGATCTACAAAGAACAAAGGGAAACGCTCAGTCAGGTATGTATATATATATATATACATATTGTTTTTGTTGTGTGTTTTAATGGTGGCTTATGAATTCTTGGGGAATCAAATTTTGGCTATGTAGTTTCTTTAGTTCTTCAACAATGGCTGAACTAGAGTTTTACATTTACTTCCCTTTCTTTTGTATTTATATATATTCTCTAACCGAACACAACTCAACTAGCC

mRNA sequence

ATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCTGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAGAGATTGTATTTGAATGCGCTCAAGGTGTTTGTGAATATGCTCAGGAGAGTTTTAAGGGAAGTGAATGCATAAACCATATCTGTTTTGGAAATGTGGGAAGAAGAGGATCTACAAAGAACAAAGGGAAACGCTCAGTCAGGtatgtatatatatatatatacatatTGTTTTTGTTGTGTGTTTTAATGGTGGCTTATGAATTCTTGGGGAATCAAATTTTGGCTATGTAGTTTCTTTAGTTCTTCAACAATGGCTGAACTAGAGTTTTACATTTACTTCCCTTTCTTTTGTATTTATATATATTCTCTAACCGAACACAACTCAACTAGCC

Coding sequence (CDS)

ATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCTGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAG

Protein sequence

MYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKICELGGGFEGDGTEGGDGSEE*

Homology

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BLAST of Cucsa.298450 vs. Swiss-Prot
Match: THYN1_HUMAN (Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 1


Query: 54  YWLLKTEP---------AEWSWADQAANDGRTT-WDGVKNKQAQKHLKSMKLGDRCFFYH 113
           +WL+K+EP          ++S  D  A   +TT WDGV+N QA+  L++MKLG+  FFYH
Sbjct: 56  HWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYH 115

Query: 114 SGAKARRVVGVVAVAREWY---------------SSVDDE---VVVDVEAVGEMREPVDL 173
           S  K   + G++ + +E Y               SS +D     +VDV+ V  M+  + L
Sbjct: 116 SNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPL 175

Query: 174 KEMKKRMEG-------MKNFALFRQPRLSVVPVTKEIWDKICEL 183
            E+K   +        +KN  LF + RLS+ P+T+E +D +  L
Sbjct: 176 AELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 219

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BLAST of Cucsa.298450 vs. Swiss-Prot
Match: THYN1_RAT (Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 61/179 (34.08%), Postives = 87/179 (48.60%), Query Frame = 1


Query: 40  EKTMANAVAGDK-RQYWLLKTEPA---------EWSWADQAANDGRTT-WDGVKNKQAQK 99
           EKT      G     YWL+K+EP          ++S  D  A   +TT WDGV+N QA  
Sbjct: 42  EKTTTFKTCGKNLSNYWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWN 101

Query: 100 HLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY---------------SSVDDE---VV 159
            L++MKL D  FFYHS  K   +VG++ + +E Y               SS +D     +
Sbjct: 102 FLRAMKLEDEAFFYHSNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWSM 161

Query: 160 VDVEAVGEMREPVDLKEMKKRMEG-------MKNFALFRQPRLSVVPVTKEIWDKICEL 183
           VDV+ V  M+  + L E+K   +        +K+  LF + RLSV P+T+E +D I  L
Sbjct: 162 VDVQFVRMMKRFISLDELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of Cucsa.298450 vs. Swiss-Prot
Match: THYN1_MOUSE (Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-14
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 1


Query: 54  YWLLKTEPA---------EWSWADQAANDGRTT-WDGVKNKQAQKHLKSMKLGDRCFFYH 113
           YWL+K+EP          ++S  D  A   +T  WDGV+N QA+  L++MKL D  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYH 116

Query: 114 SGAKARRVVGVVAVAREWY---------------SSVDDE---VVVDVEAVGEMREPVDL 173
           S  K   +VG++ + +E Y               SS +D+    +VDV+ V  M+  + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPL 176

Query: 174 KEMKKRMEG-------MKNFALFRQPRLSVVPVTKEIWDKICEL 183
           +E+K   +        +K+  LF + RLSV P+T+E +D I  L
Sbjct: 177 EELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

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BLAST of Cucsa.298450 vs. Swiss-Prot
Match: THYN1_CHICK (Thymocyte nuclear protein 1 OS=Gallus gallus GN=THYN1 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 1


Query: 54  YWLLKTEP---------AEWSWADQAANDGRTT-WDGVKNKQAQKHLKSMKLGDRCFFYH 113
           +WLLK+EP          ++S  D  A   +TT W+GV+N QA+  L++MKLG + FFYH
Sbjct: 73  HWLLKSEPESRLEKGVDVKFSIEDLKAQPNQTTFWEGVRNYQARNFLRAMKLGQQAFFYH 132

Query: 114 SGAKARRVVGVVAVAREWY--------------SSVDDE----VVVDVEAVGEMREPVDL 173
           S  K   +VG+V + +E Y              SS   E     +VDV+ V   +  + L
Sbjct: 133 SNCKEPGIVGIVKIVKEAYPDHTQFDQKDPHYDSSSRKENPKWSMVDVQFVRMTKRFIPL 192

Query: 174 KEMK-----KRMEG--MKNFALFRQPRLSVVPVTKEIWDKICEL 183
            E+K      + +G  +KN  LF + RLS+ P+T+E +D +  L
Sbjct: 193 SEIKTHHLAHKADGGPLKNMMLFSRQRLSIQPLTQEEFDFVLSL 236

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BLAST of Cucsa.298450 vs. Swiss-Prot
Match: THYN1_DANRE (Thymocyte nuclear protein 1 OS=Danio rerio GN=thyn1 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.3e-11
Identity = 55/186 (29.57%), Postives = 90/186 (48.39%), Query Frame = 1


Query: 34  SAVIRSEKTMANAVAGDKRQY--WLLKTEP---------AEWSWADQAANDGRT-TWDGV 93
           SA ++ +    N     K  Y  WL+K+EP          ++   D  A   +T  WDGV
Sbjct: 40  SAAVKGDVENKNDDDACKPSYSRWLMKSEPESRIENGVDVKFGIEDLKALPNQTGCWDGV 99

Query: 94  KNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY----------------SSV 153
           +N QA+  ++ MK+G + FFYHS  K   + G++ + +E Y                S  
Sbjct: 100 RNYQARNFMREMKVGQQAFFYHSNCKEPGIAGLMKIVKEAYVDHTQFDKKDVHYDPSSKA 159

Query: 154 DDEV--VVDVEAVGEMREPVDLKEMKK-----RMEG--MKNFALFRQPRLSVVPVTKEIW 183
           D+    +VDV+    ++  + L E+KK     R++G  +K+ ALF + RLSV P+T E +
Sbjct: 160 DNPKWHMVDVQFERMVKRFIPLAELKKYHLEHRVKGGPLKDMALFTRARLSVQPLTAEEF 219

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BLAST of Cucsa.298450 vs. TrEMBL
Match: A0A0A0KWC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000630 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 1.9e-111
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTE 60
           MYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTE
Sbjct: 5   MYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTE 64

Query: 61  PAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE 120
           PAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE
Sbjct: 65  PAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE 124

Query: 121 WYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKIC 180
           WYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKIC
Sbjct: 125 WYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKIC 184

Query: 181 ELGGGFEGDGTEGGDGSEE 200
           ELGGGFEGDGTEGGDGSEE
Sbjct: 185 ELGGGFEGDGTEGGDGSEE 203

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BLAST of Cucsa.298450 vs. TrEMBL
Match: E5GBH2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.4e-95
Identity = 176/196 (89.80%), Postives = 182/196 (92.86%), Query Frame = 1


Query: 3   LGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTEPA 62
           LG NITTIFP    P+  SLLPLPLN HK+ +AVIRSEKTMAN VAGDKRQYWLLKTEPA
Sbjct: 7   LGANITTIFPPVTSPTSTSLLPLPLNRHKR-NAVIRSEKTMANPVAGDKRQYWLLKTEPA 66

Query: 63  EWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY 122
           EWSWADQAANDGR+ WDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY
Sbjct: 67  EWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY 126

Query: 123 SSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKICEL 182
           SSV+DEVVVDVEAVGEMREPVDLKEMKK MEGMKNFALFRQPRLSVVPV KEIWDKICEL
Sbjct: 127 SSVEDEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIWDKICEL 186

Query: 183 GGGFEGDGTEGGDGSE 199
           GGGFEGDGTEGG GS+
Sbjct: 187 GGGFEGDGTEGGHGSD 201

[Close]

BLAST of Cucsa.298450 vs. TrEMBL
Match: M5VHY7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb017205mg PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.1e-58
Identity = 112/158 (70.89%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 49  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 108
           G+++ YWLLKTEP EWSW DQAAN G T WDGVKNKQAQK+LKSMKLGD CFFYHSGAKA
Sbjct: 2   GEEKHYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNLKSMKLGDLCFFYHSGAKA 61

Query: 109 RRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSV 168
           RRVVGVVAV REWYS   D+ VVDV+AVGEMR PVDLKEMK   +G+K FALFRQPRLSV
Sbjct: 62  RRVVGVVAVVREWYSDGGDDGVVDVKAVGEMRRPVDLKEMKGE-KGLKGFALFRQPRLSV 121

Query: 169 VPVTKEIWDKICELGGGFEGDGT-------EGGDGSEE 200
           VPV +++W ++C+LGGG++GDGT       +G  G EE
Sbjct: 122 VPVPEDVWIRVCDLGGGYQGDGTVLESHDSDGESGEEE 158

[Close]

BLAST of Cucsa.298450 vs. TrEMBL
Match: B9S802_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383260 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.1e-58
Identity = 108/144 (75.00%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 49  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 108
           G ++QYWLLKTEP EWSW DQA+N G T WDGVKNKQAQK+LK+M + D CFFYHSGAKA
Sbjct: 2   GKEKQYWLLKTEPGEWSWDDQASNGGITNWDGVKNKQAQKNLKAMNIKDLCFFYHSGAKA 61

Query: 109 RRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSV 168
           RRVVGVVAV +EWYS+ DDEVVVDV+AVGEMR PVDLKEMK   +G+ +FALFRQPRLSV
Sbjct: 62  RRVVGVVAVVKEWYSNDDDEVVVDVKAVGEMRRPVDLKEMKND-DGLSDFALFRQPRLSV 121

Query: 169 VPVTKEIWDKICELGGGFEGDGTE 193
           VPV KE+W+++CELG GFEGDG +
Sbjct: 122 VPVPKEVWERVCELGDGFEGDGND 144

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BLAST of Cucsa.298450 vs. TrEMBL
Match: M5W4D9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012811mg PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.9e-56
Identity = 105/144 (72.92%), Postives = 122/144 (84.72%), Query Frame = 1


Query: 50  DKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKAR 109
           +++QYWLLKTEP EWSW +QAAN G T WDGVKNKQAQKHLKSMKLGD CFFYHSGAKAR
Sbjct: 3   EEKQYWLLKTEPGEWSWENQAANGGVTKWDGVKNKQAQKHLKSMKLGDLCFFYHSGAKAR 62

Query: 110 RVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVV 169
           RVVGVV V REWYS   D+  V V+AVGEMR PVDLKEMK   +G+K FALF+QPRLSVV
Sbjct: 63  RVVGVVTVVREWYSDSGDDGTVAVKAVGEMRRPVDLKEMKGE-KGLKGFALFKQPRLSVV 122

Query: 170 PVTKEIWDKICELGGGFEGDGTEG 194
           PV +++W ++C+LGGG++GDGT G
Sbjct: 123 PVPEDVWIRVCDLGGGYQGDGTVG 145

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BLAST of Cucsa.298450 vs. TAIR10
Match: AT2G14660.1 (AT2G14660.1 unknown protein)

HSP 1 Score: 198.4 bits (503), Expect = 4.3e-51
Identity = 99/157 (63.06%), Postives = 121/157 (77.07%), Query Frame = 1


Query: 49  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 108
           G  ++YWLLKTEP EWSW+DQ +N G + WDGVKNKQAQK+LKSM LGD CFFYHSG K+
Sbjct: 2   GKTKRYWLLKTEPNEWSWSDQESNGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTKS 61

Query: 109 RRVVGVVAVAREWYS----SVDDEVVVDVEAVGEMREPVDLKEMKKRMEGM--KNFALFR 168
           R VVGVV V+REWY+     V+ E  VDV+A+GEMR+ VDLKEMK   +G+  K F LFR
Sbjct: 62  RCVVGVVEVSREWYTDDAEGVEGEGAVDVKAIGEMRKCVDLKEMKGD-KGIITKGFVLFR 121

Query: 169 QPRLSVVPVTKEIWDKICELGGGFEGDGTEGGDGSEE 200
           QPRLSVVPV +++W+ ICELG GF GDG E  + S++
Sbjct: 122 QPRLSVVPVEEDVWNMICELGNGFCGDGKEDCESSDD 157

[Close]

BLAST of Cucsa.298450 vs. NCBI nr
Match: gi|778689136|ref|XP_004150262.2| (PREDICTED: thymocyte nuclear protein 1 [Cucumis sativus])

HSP 1 Score: 409.8 bits (1052), Expect = 2.7e-111
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTE 60
           MYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTE
Sbjct: 5   MYLGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTE 64

Query: 61  PAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE 120
           PAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE
Sbjct: 65  PAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVARE 124

Query: 121 WYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKIC 180
           WYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKIC
Sbjct: 125 WYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKIC 184

Query: 181 ELGGGFEGDGTEGGDGSEE 200
           ELGGGFEGDGTEGGDGSEE
Sbjct: 185 ELGGGFEGDGTEGGDGSEE 203

[Close]

BLAST of Cucsa.298450 vs. NCBI nr
Match: gi|659108843|ref|XP_008454415.1| (PREDICTED: thymocyte nuclear protein 1 [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 176/196 (89.80%), Postives = 182/196 (92.86%), Query Frame = 1


Query: 3   LGGNITTIFPLEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTEPA 62
           LG NITTIFP    P+  SLLPLPLN HK+ +AVIRSEKTMAN VAGDKRQYWLLKTEPA
Sbjct: 7   LGANITTIFPPVTSPTSTSLLPLPLNRHKR-NAVIRSEKTMANPVAGDKRQYWLLKTEPA 66

Query: 63  EWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY 122
           EWSWADQAANDGR+ WDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY
Sbjct: 67  EWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWY 126

Query: 123 SSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKICEL 182
           SSV+DEVVVDVEAVGEMREPVDLKEMKK MEGMKNFALFRQPRLSVVPV KEIWDKICEL
Sbjct: 127 SSVEDEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIWDKICEL 186

Query: 183 GGGFEGDGTEGGDGSE 199
           GGGFEGDGTEGG GS+
Sbjct: 187 GGGFEGDGTEGGHGSD 201

[Close]

BLAST of Cucsa.298450 vs. NCBI nr
Match: gi|255562220|ref|XP_002522118.1| (PREDICTED: thymocyte nuclear protein 1 [Ricinus communis])

HSP 1 Score: 233.0 bits (593), Expect = 4.5e-58
Identity = 108/144 (75.00%), Postives = 125/144 (86.81%), Query Frame = 1


Query: 49  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 108
           G ++QYWLLKTEP EWSW DQA+N G T WDGVKNKQAQK+LK+M + D CFFYHSGAKA
Sbjct: 2   GKEKQYWLLKTEPGEWSWDDQASNGGITNWDGVKNKQAQKNLKAMNIKDLCFFYHSGAKA 61

Query: 109 RRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSV 168
           RRVVGVVAV +EWYS+ DDEVVVDV+AVGEMR PVDLKEMK   +G+ +FALFRQPRLSV
Sbjct: 62  RRVVGVVAVVKEWYSNDDDEVVVDVKAVGEMRRPVDLKEMKND-DGLSDFALFRQPRLSV 121

Query: 169 VPVTKEIWDKICELGGGFEGDGTE 193
           VPV KE+W+++CELG GFEGDG +
Sbjct: 122 VPVPKEVWERVCELGDGFEGDGND 144

[Close]

BLAST of Cucsa.298450 vs. NCBI nr
Match: gi|595791543|ref|XP_007199520.1| (hypothetical protein PRUPE_ppb017205mg [Prunus persica])

HSP 1 Score: 233.0 bits (593), Expect = 4.5e-58
Identity = 112/158 (70.89%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 49  GDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 108
           G+++ YWLLKTEP EWSW DQAAN G T WDGVKNKQAQK+LKSMKLGD CFFYHSGAKA
Sbjct: 2   GEEKHYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNLKSMKLGDLCFFYHSGAKA 61

Query: 109 RRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSV 168
           RRVVGVVAV REWYS   D+ VVDV+AVGEMR PVDLKEMK   +G+K FALFRQPRLSV
Sbjct: 62  RRVVGVVAVVREWYSDGGDDGVVDVKAVGEMRRPVDLKEMKGE-KGLKGFALFRQPRLSV 121

Query: 169 VPVTKEIWDKICELGGGFEGDGT-------EGGDGSEE 200
           VPV +++W ++C+LGGG++GDGT       +G  G EE
Sbjct: 122 VPVPEDVWIRVCDLGGGYQGDGTVLESHDSDGESGEEE 158

[Close]

BLAST of Cucsa.298450 vs. NCBI nr
Match: gi|694414231|ref|XP_009335344.1| (PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri])

HSP 1 Score: 232.6 bits (592), Expect = 5.8e-58
Identity = 115/162 (70.99%), Postives = 131/162 (80.86%), Query Frame = 1


Query: 40  EKTMANAVAGDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRC 99
           EKT   ++A +K QYWLLKTEP EWSW DQAAN G T WDGVKNKQAQK+LKSMKL D C
Sbjct: 45  EKTPTPSMAAEK-QYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKYLKSMKLSDLC 104

Query: 100 FFYHSGAKARRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFA 159
           FFYHSG KARRVVGVV+V REWYS   D+ VVDV+AVGEMR PVDLKEM KR +G+K FA
Sbjct: 105 FFYHSGTKARRVVGVVSVLREWYSEGGDDAVVDVKAVGEMRRPVDLKEM-KRDQGLKGFA 164

Query: 160 LFRQPRLSVVPVTKEIWDKICELGGGFEGDGT---EGGDGSE 199
           LFRQPRLSVVPV++++W KIC+LG G+EGDG    + G G E
Sbjct: 165 LFRQPRLSVVPVSEDVWMKICDLGSGYEGDGNAFEDDGSGGE 204

The following BLAST results are available for this feature:

BLAST of Cucsa.298450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THYN1_HUMAN	2.3e-14	32.93	Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1	[more]
THYN1_RAT	2.3e-14	34.08	Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1	[more]
THYN1_MOUSE	3.0e-14	34.15	Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1	[more]
THYN1_CHICK	1.2e-13	34.15	Thymocyte nuclear protein 1 OS=Gallus gallus GN=THYN1 PE=1 SV=1	[more]
THYN1_DANRE	5.3e-11	29.57	Thymocyte nuclear protein 1 OS=Danio rerio GN=thyn1 PE=2 SV=1	[more]

BLAST of Cucsa.298450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWC0_CUCSA	1.9e-111	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000630 PE=4 SV=1	[more]
E5GBH2_CUCME	1.4e-95	89.80	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M5VHY7_PRUPE	3.1e-58	70.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb017205mg PE=4 SV=1	[more]
B9S802_RICCO	3.1e-58	75.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383260 PE=4 SV=1	[more]
M5W4D9_PRUPE	2.9e-56	72.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012811mg PE=4 SV=1	[more]

BLAST of Cucsa.298450 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14660.1	4.3e-51	63.06	unknown protein	[more]

BLAST of Cucsa.298450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778689136\|ref\|XP_004150262.2\|	2.7e-111	100.00	PREDICTED: thymocyte nuclear protein 1 [Cucumis sativus]	[more]
gi\|659108843\|ref\|XP_008454415.1\|	2.0e-95	89.80	PREDICTED: thymocyte nuclear protein 1 [Cucumis melo]	[more]
gi\|255562220\|ref\|XP_002522118.1\|	4.5e-58	75.00	PREDICTED: thymocyte nuclear protein 1 [Ricinus communis]	[more]
gi\|595791543\|ref\|XP_007199520.1\|	4.5e-58	70.89	hypothetical protein PRUPE_ppb017205mg [Prunus persica]	[more]
gi\|694414231\|ref\|XP_009335344.1\|	5.8e-58	70.99	PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002740	EVE_domain
IPR015947	PUA-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.298450.1	Cucsa.298450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002740	EVE domain	GENE3D	G3DSA:3.10.590.10		coord: 53..182 score: 7.4
IPR002740	EVE domain	PFAM	PF01878	EVE	coord: 53..182 score: 1.4
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 50..184 score: 2.24
None	No IPR available	PANTHER	PTHR14087	FAMILY NOT NAMED	coord: 46..199 score: 1.2
None	No IPR available	PANTHER	PTHR14087:SF9	SUBFAMILY NOT NAMED	coord: 46..199 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.298450	Cla006451	Watermelon (97103) v1	cgywmB541
Cucsa.298450	Csa4G000630	Cucumber (Chinese Long) v2	cgycuB423
Cucsa.298450	MELO3C018021	Melon (DHL92) v3.5.1	cgymeB490
Cucsa.298450	ClCG10G010070	Watermelon (Charleston Gray)	cgywcgB513
Cucsa.298450	CSPI04G00140	Wild cucumber (PI 183967)	cgycpiB447
Cucsa.298450	CmaCh04G004370	Cucurbita maxima (Rimu)	cgycmaB0825
Cucsa.298450	CmoCh04G004670	Cucurbita moschata (Rifu)	cgycmoB0819
Cucsa.298450	MELO3C018021.2	Melon (DHL92) v3.6.1	cgymedB489
Cucsa.298450	CsaV3_4G000110	Cucumber (Chinese Long) v3	cgycucB460
Cucsa.298450	Cla97C10G193070	Watermelon (97103) v2	cgywmbB514
Cucsa.298450	Bhi11G000917	Wax gourd	cgywgoB597
Cucsa.298450	Carg08110	Silver-seed gourd	carcgyB0439

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.298450	Silver-seed gourd	carcgyB0346
Cucsa.298450	Cucurbita maxima (Rimu)	cgycmaB0824
Cucsa.298450	Cucurbita moschata (Rifu)	cgycmoB0818
Cucsa.298450	Cucurbita pepo (Zucchini)	cgycpeB0780
Cucsa.298450	Cucurbita pepo (Zucchini)	cgycpeB0781
Cucsa.298450	Bottle gourd (USVL1VR-Ls)	cgylsiB481