ClCG05G005600 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G005600
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptiontRNA/rRNA methyltransferase family protein
LocationCG_Chr05 : 5481024 .. 5483601 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGAAGGATCCGCCAGCAAACGACATCGTATTGGCAAGAATGCATCAGACTCCAGGCCGAACAGTGAAACGCTCCTTCTCCTTCTTCGATCCGCCGCCATAGTTGAGTTGCGAAGCTCTGTCGAAAGCCCTCAATCCCTAAACCCCATCACTTCATTTTCAATCAATTCATCACCATCCAATTCGGAATGGGGATCGAAAGCTACGTTCTGGTGCATAACATAGCCAAAAGGCACAATGTTGGCACTTTGGCCCGAAGCGCCACCGCCTTCGGCGTCTCGGAACTCATCCTCGTCGGCCGTCGGGACTTCAACGCCTTTGGTAGCCATGGTTCCACTTCTCATCTCCGCTTCCGCCATTTTCACTCCCTTCTCGACGCCCAAACTTTCCTCAAGGTTCTGCTTTCTTTCTTCCTTCCCTTACGTATTCATTTGGTTATGGGTTTGTTTTGAAATTTGAATTGCGTTCTTTTGTTCTGTAGGAGAAGGATTGCGATATATGTGGCGTGGAGATCACTGACAACGCCGTGGCTGTCAATCAGCATCCTTTCAAGAGGAGCACCGCTTTTCTTCTTGGAAACGAGGTTGGTTGTTAGTTTTCATTTTATTGGGTTGTCATTGATCGTGATATCTATATGCTTGAATTGGAATTCCCTTGTTTGATCTGTCCTCGATCTATTTCAAGGGTTGTTTTCTATATGCTGCAGTCGGTTAACAAGTTCCTTTCTAATTCAATTGATACTTATGACTTAAGAACTTCTTGTCTCCTCGAGTTGACCTTGAGGTGGGCAAAACATCTTTGAGACTAGTGGGGTTGGCCATGAGTTTTATCCTGCAAGGAATCAACTCTGATAGCATGGTAAAGAATGATATGATCTGACTTGAACAAGATTTGTTCTATTGGTTGTACAAATGGGAGTTCTAAGCATCGTAAAAAATGATAACTACTTAATGTTTCTCTAGCAATAATACTTGCTGTAATGCTACTTACTGTTTCTCTAGCAATGATATTGCATTTTTTTCTATAAAAAAAAATGCAATCTCTTTCCACCTTTGATATGATGAGATTAGGACTTAAAATGGCATTAGAGATTTCTTGCTTTATTGTAGGATCCATGTCTCTATGATGATTTTGGCATTGAGAGTAAGTTAGTGGCAATGGCATGGTCATCTGTCATCTGGACTGAATTGGATCAGAATTATTTCGAAATAATTTTGACACTATTTTCAGCATTGAGTCACAGTCACCCTTTTGATCGTTATGTGTATGTTGTTTTCAGGGAACAGGGCTTTCTGCTAAAGAGTGTGCAATCTGTGACTTCTTCATTTACATCCCACAATATGGTGTTGGCACTGCTTCTTTGAATGTAACTGTAGCTGCTTCCATTGTCCTACATCATTTTGGCGGTAATTGTTTCAGACCTTTGCATTTTTATCTCCCTCTTTTGAGTTTCTTTTGCTTACATGTCTAATGTATATCACCTGTAAGAACTGAGTCTCTCTTAATATTGCTCATTCATACTTTTTGTTTTTGACCGAGCAAAACTGTGAGTACCGTAATATTATGCACTCTATGAAAGGACTATAGGAAGAAATGCACATGCACATGCACATATATCTTAAAAGTACGTAAGGAGCGGCAGTTACCTGATCTAATTATTTTTACCCGTTTCTCTGAGTCCTGAATCAATTCTTCATACTGGGACATGATCCCTTCAAGTTGAAACTAAGGAAACTGTGTCCTAGGAATAACTATGGCTTGCTTGATTGAATTATGTGGCAATTTGTAATAGCTCACATACTTAATGTTGATGATTGATCATCTAGTAGATCGATAGAATCATCCTCATTGTCAAGTATACATAGGTTTCTAGTGTGCATATATCGAGATTTAAGTGAAAATCGAGTTGGTTATGTCTTAATTGATTAAATGGAAATGATACTTGTCTCTTTTTCTAGATGTAAATCTAACTTTTCATGAACTGTATTTTTCAGTTTGGGCAGGATTTCCTGAAAGATGTCGTGATGGTAACAAGTTTATAGTGGCTGAAAGACCAGTAAAACAGGCCAAGCGGAATTATTGTCCCAAAACAGAAGAATCTATTATTGAAGAGCGAAAATCCAGGAGGGAGAATGCTTCTAAAGGCTTCTTTGATGAGGGAATGATTGATGATTCAACATCCAACCTTCTTGATACATTGTTTATTGACCAATGATTTGAGTTGGAGATGGGAGTAGCTTTTCTATTATCAAATGCATCCAGAACCCACCGGCAGCCTGCAGGATCACTGTCGATTAGTACCATTACTGAAGTCGTTCATTGCAGGAACCTGTTCCGGAGAGAGAGGAAATTCTTCTCCTTTGTCTTTATCTTTTTACTCTTATCTTTGAATTTTCCTAGAAAGTTTGTGGAATTATATTTAGTTAATTTACTTGATGATTGACTTGCCAAAAAAAAAAAAAAACATGACCACATGGGGTAGGGTTGATTGAAGGAAATGTAGGGTTGATAGTGCTATCTTTTTGTCAAAAAAACCATGTACATGTAACATGATATGCATAGGAAATATCAAAATTTC

mRNA sequence

TGGGAAGGATCCGCCAGCAAACGACATCGTATTGGCAAGAATGCATCAGACTCCAGGCCGAACAGTGAAACGCTCCTTCTCCTTCTTCGATCCGCCGCCATAGTTGAGTTGCGAAGCTCTGTCGAAAGCCCTCAATCCCTAAACCCCATCACTTCATTTTCAATCAATTCATCACCATCCAATTCGGAATGGGGATCGAAAGCTACGCACAATGTTGGCACTTTGGCCCGAAGCGCCACCGCCTTCGGCGTCTCGGAACTCATCCTCGTCGGCCGTCGGGACTTCAACGCCTTTGGTAGCCATGGTTCCACTTCTCATCTCCGCTTCCGCCATTTTCACTCCCTTCTCGACGCCCAAACTTTCCTCAAGGAGAAGGATTGCGATATATGTGGCGTGGAGATCACTGACAACGCCGTGGCTGTCAATCAGCATCCTTTCAAGAGGAGCACCGCTTTTCTTCTTGGAAACGAGGGAACAGGGCTTTCTGCTAAAGAGTGTGCAATCTGTGACTTCTTCATTTACATCCCACAATATGGTGTTGGCACTGCTTCTTTGAATGTAACTGTAGCTGCTTCCATTGTCCTACATCATTTTGGCGTTTGGGCAGGATTTCCTGAAAGATGTCGTGATGGTAACAAGTTTATAGTGGCTGAAAGACCAGTAAAACAGGCCAAGCGGAATTATTGTCCCAAAACAGAAGAATCTATTATTGAAGAGCGAAAATCCAGGAGGGAGAATGCTTCTAAAGGCTTCTTTGATGAGGGAATGATTGATGATTCAACATCCAACCTTCTTGATACATTGTTTATTGACCAATGATTTGAGTTGGAGATGGGAGTAGCTTTTCTATTATCAAATGCATCCAGAACCCACCGGCAGCCTGCAGGATCACTGTCGATTAGTACCATTACTGAAGTCGTTCATTGCAGGAACCTGTTCCGGAGAGAGAGGAAATTCTTCTCCTTTGTCTTTATCTTTTTACTCTTATCTTTGAATTTTCCTAGAAAGTTTGTGGAATTATATTTAGTTAATTTACTTGATGATTGACTTGCCAAAAAAAAAAAAAAACATGACCACATGGGGTAGGGTTGATTGAAGGAAATGTAGGGTTGATAGTGCTATCTTTTTGTCAAAAAAACCATGTACATGTAACATGATATGCATAGGAAATATCAAAATTTC

Coding sequence (CDS)

TGGGAAGGATCCGCCAGCAAACGACATCGTATTGGCAAGAATGCATCAGACTCCAGGCCGAACAGTGAAACGCTCCTTCTCCTTCTTCGATCCGCCGCCATAGTTGAGTTGCGAAGCTCTGTCGAAAGCCCTCAATCCCTAAACCCCATCACTTCATTTTCAATCAATTCATCACCATCCAATTCGGAATGGGGATCGAAAGCTACGCACAATGTTGGCACTTTGGCCCGAAGCGCCACCGCCTTCGGCGTCTCGGAACTCATCCTCGTCGGCCGTCGGGACTTCAACGCCTTTGGTAGCCATGGTTCCACTTCTCATCTCCGCTTCCGCCATTTTCACTCCCTTCTCGACGCCCAAACTTTCCTCAAGGAGAAGGATTGCGATATATGTGGCGTGGAGATCACTGACAACGCCGTGGCTGTCAATCAGCATCCTTTCAAGAGGAGCACCGCTTTTCTTCTTGGAAACGAGGGAACAGGGCTTTCTGCTAAAGAGTGTGCAATCTGTGACTTCTTCATTTACATCCCACAATATGGTGTTGGCACTGCTTCTTTGAATGTAACTGTAGCTGCTTCCATTGTCCTACATCATTTTGGCGTTTGGGCAGGATTTCCTGAAAGATGTCGTGATGGTAACAAGTTTATAGTGGCTGAAAGACCAGTAAAACAGGCCAAGCGGAATTATTGTCCCAAAACAGAAGAATCTATTATTGAAGAGCGAAAATCCAGGAGGGAGAATGCTTCTAAAGGCTTCTTTGATGAGGGAATGATTGATGATTCAACATCCAACCTTCTTGATACATTGTTTATTGACCAATGA

Protein sequence

WEGSASKRHRIGKNASDSRPNSETLLLLLRSAAIVELRSSVESPQSLNPITSFSINSSPSNSEWGSKATHNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTVAASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASKGFFDEGMIDDSTSNLLDTLFIDQ
Homology
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BLAST of ClCG05G005600 vs. Swiss-Prot
Match: YSGA_BACSU (Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 168) GN=ysgA PE=3 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 8.3e-07
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1 

Query: 71  NVGTLARSATAFGVSELILV--------GRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFL 130
           N+GT+ R+A A G+  ++L         G+   +A GSH     +R R+  S +D    L
Sbjct: 117 NLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVR-RNLPSYVDE---L 176

Query: 131 KEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGT 190
           K +   + G  +  N     + P   S A ++GNEG G+ A      D  +Y+P YG   
Sbjct: 177 KAEGVKVYGTAL-QNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTDLNLYVPLYG-QA 236

Query: 191 ASLNVTVAASIVLHH 198
            SLNV VAA+I+++H
Sbjct: 237 ESLNVAVAAAILVYH 245

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BLAST of ClCG05G005600 vs. TrEMBL
Match: A0A0A0LAH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150750 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.5e-108
Identity = 193/203 (95.07%), Postives = 200/203 (98.52%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGT+ARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI
Sbjct: 16  HNVGTMARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 75

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFF+YIPQYGVGTASLNVTV
Sbjct: 76  CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFVYIPQYGVGTASLNVTV 135

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGFPERCRDG+KFIVAERPV+Q KRNYC +TEESI+EERKSRRENASK
Sbjct: 136 AASIVLHHFGVWAGFPERCRDGSKFIVAERPVRQVKRNYCTETEESIMEERKSRRENASK 195

Query: 250 GFFDEGMIDDSTSNLLDTLFIDQ 273
           GFFDEGMID+S SNLLDTLFIDQ
Sbjct: 196 GFFDEGMIDESASNLLDTLFIDQ 218

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BLAST of ClCG05G005600 vs. TrEMBL
Match: A5AVL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02300 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 6.2e-94
Identity = 171/202 (84.65%), Postives = 182/202 (90.10%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGTLARSA+A GVSELILVGRRDFN+FGSHGSTSHLRFRHFHSLLDA+ FLKEKDCDI
Sbjct: 16  HNVGTLARSASALGVSELILVGRRDFNSFGSHGSTSHLRFRHFHSLLDARHFLKEKDCDI 75

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLS KEC ICDFF+YIPQYG GTASLNVTV
Sbjct: 76  CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSVKECEICDFFVYIPQYGGGTASLNVTV 135

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGF ER RDGNKF+VAERP +Q +RNYC +T +SIIEERK RR+NAS 
Sbjct: 136 AASIVLHHFGVWAGFSERIRDGNKFVVAERPAQQVRRNYCTETADSIIEERKIRRQNASN 195

Query: 250 GFFDEGMIDDSTSNLLDTLFID 272
           GFFDE    +S SNLLD LF D
Sbjct: 196 GFFDESGSGESPSNLLDALFGD 217

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BLAST of ClCG05G005600 vs. TrEMBL
Match: A0A161ZT46_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022857 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 168/200 (84.00%), Postives = 183/200 (91.50%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGTLARSATAFGV+ELILVGRRDFN+FGSHGSTSH RFRHFHSL DA++FLKEKDCDI
Sbjct: 34  HNVGTLARSATAFGVTELILVGRRDFNSFGSHGSTSHCRFRHFHSLADARSFLKEKDCDI 93

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITD+AVAVNQHPF +STAFLLGNEGTGLS+KECAICDFF+YIPQYG GTASLNVT+
Sbjct: 94  CGVEITDDAVAVNQHPFTKSTAFLLGNEGTGLSSKECAICDFFVYIPQYGCGTASLNVTI 153

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGF ER RDGNKF+VAERPVKQ+ RNYC +T E+IIEERK R+ENA  
Sbjct: 154 AASIVLHHFGVWAGFSERSRDGNKFVVAERPVKQSGRNYCTETAETIIEERKLRKENALN 213

Query: 250 GFFDEGMIDDSTSNLLDTLF 270
           GFFDE +  DS SNLLD LF
Sbjct: 214 GFFDESVKQDSPSNLLDALF 233

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BLAST of ClCG05G005600 vs. TrEMBL
Match: A0A068TUC6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025939001 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 5.3e-93
Identity = 167/200 (83.50%), Postives = 182/200 (91.00%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGTLARS TAFGVSELILVGRRDFNAFGSHGSTSHL FRHFHSL  A++FLKE+DCDI
Sbjct: 20  HNVGTLARSCTAFGVSELILVGRRDFNAFGSHGSTSHLNFRHFHSLSLAKSFLKERDCDI 79

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITD+AVAVNQHPFKRSTAFLLGNEGTGLSAKEC ICDFF+YIPQYG GTASLNVTV
Sbjct: 80  CGVEITDDAVAVNQHPFKRSTAFLLGNEGTGLSAKECEICDFFVYIPQYGCGTASLNVTV 139

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGF ER R+GNKF+VAERP KQ ++NYC +T ESI+EER+ +REN S 
Sbjct: 140 AASIVLHHFGVWAGFSERTREGNKFVVAERPTKQERKNYCAETTESIVEERRLKRENTSN 199

Query: 250 GFFDEGMIDDSTSNLLDTLF 270
           GFFDE + DDS+SNLLD LF
Sbjct: 200 GFFDESVKDDSSSNLLDGLF 219

[Close]
BLAST of ClCG05G005600 vs. TrEMBL
Match: A0A061ENU9_THECC (OBP33pep like protein isoform 1 OS=Theobroma cacao GN=TCM_021087 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92
Identity = 164/203 (80.79%), Postives = 184/203 (90.64%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGTLARSATAFGVSE+I+VGRRDFNAFGSHGSTSHLRFRHFHSL DA  +LKEKDCDI
Sbjct: 16  HNVGTLARSATAFGVSEIIIVGRRDFNAFGSHGSTSHLRFRHFHSLTDANLYLKEKDCDI 75

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITD AV+V +HPFK+STAFLLGNEGTGLSAKEC +CDFF+YIPQYG GTASLNVTV
Sbjct: 76  CGVEITDGAVSVTEHPFKKSTAFLLGNEGTGLSAKECEMCDFFVYIPQYGGGTASLNVTV 135

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGF ER RDGNKF+VAE+P+KQ  R YC +T++SIIEERKSRRENAS 
Sbjct: 136 AASIVLHHFGVWAGFSERIRDGNKFVVAEKPLKQVSRKYCTETDDSIIEERKSRRENASN 195

Query: 250 GFFDEGMIDDSTSNLLDTLFIDQ 273
           GFFDEG    S++NLLD++F ++
Sbjct: 196 GFFDEGKNGASSANLLDSVFTEE 218

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BLAST of ClCG05G005600 vs. TAIR10
Match: AT4G15520.1 (AT4G15520.1 tRNA/rRNA methyltransferase (SpoU) family protein)

HSP 1 Score: 323.2 bits (827), Expect = 1.6e-88
Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLK-EKDCD 129
           HNVGTLARSATAFGV+ELILVGRRDFNAFGSHGS SH+RFRHFHSL++A+ +LK EKDCD
Sbjct: 17  HNVGTLARSATAFGVTELILVGRRDFNAFGSHGSASHIRFRHFHSLIEARNYLKEEKDCD 76

Query: 130 ICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVT 189
           ICGVEI D A AVN+HPFKR+TAFLLGNEG+GLSAKE  ICDFF+YIPQYG GTASLNVT
Sbjct: 77  ICGVEIADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVT 136

Query: 190 VAASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENAS 249
           VAASIVLHHFGVWAGF ER RDG+KFIVA+RPV+Q +RN+C  TEES+IEERK R+E+A 
Sbjct: 137 VAASIVLHHFGVWAGFSERVRDGSKFIVADRPVRQGRRNFCAGTEESVIEERKLRKESAE 196

Query: 250 KGFFDEGMIDD--STSNLLDTLFIDQ 273
            GFFD+   ++  S+S+LLD LF+++
Sbjct: 197 NGFFDDNGNENGSSSSDLLDGLFLNE 222

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BLAST of ClCG05G005600 vs. NCBI nr
Match: gi|659076582|ref|XP_008438758.1| (PREDICTED: rRNA methyltransferase 1, mitochondrial [Cucumis melo])

HSP 1 Score: 406.8 bits (1044), Expect = 3.1e-110
Identity = 197/203 (97.04%), Postives = 201/203 (99.01%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGT+ARSATAFGVSELILVGRRDFNAFGSHGSTSH+RFRHFHSLLDAQTFLKEKDCDI
Sbjct: 16  HNVGTMARSATAFGVSELILVGRRDFNAFGSHGSTSHIRFRHFHSLLDAQTFLKEKDCDI 75

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV
Sbjct: 76  CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 135

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGFPERCRDGNKFIVAERPV+Q KRNYC +TEESIIEERKSRRENASK
Sbjct: 136 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVRQVKRNYCAETEESIIEERKSRRENASK 195

Query: 250 GFFDEGMIDDSTSNLLDTLFIDQ 273
           GFFDEGMIDDSTSNLLDTLFIDQ
Sbjct: 196 GFFDEGMIDDSTSNLLDTLFIDQ 218

[Close]
BLAST of ClCG05G005600 vs. NCBI nr
Match: gi|449432771|ref|XP_004134172.1| (PREDICTED: rRNA methyltransferase 1, mitochondrial [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 2.2e-108
Identity = 193/203 (95.07%), Postives = 200/203 (98.52%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGT+ARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI
Sbjct: 16  HNVGTMARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 75

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFF+YIPQYGVGTASLNVTV
Sbjct: 76  CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFVYIPQYGVGTASLNVTV 135

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGFPERCRDG+KFIVAERPV+Q KRNYC +TEESI+EERKSRRENASK
Sbjct: 136 AASIVLHHFGVWAGFPERCRDGSKFIVAERPVRQVKRNYCTETEESIMEERKSRRENASK 195

Query: 250 GFFDEGMIDDSTSNLLDTLFIDQ 273
           GFFDEGMID+S SNLLDTLFIDQ
Sbjct: 196 GFFDEGMIDESASNLLDTLFIDQ 218

[Close]
BLAST of ClCG05G005600 vs. NCBI nr
Match: gi|225432460|ref|XP_002278797.1| (PREDICTED: uncharacterized protein LOC100252797 isoform X1 [Vitis vinifera])

HSP 1 Score: 352.1 bits (902), Expect = 9.0e-94
Identity = 171/202 (84.65%), Postives = 182/202 (90.10%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGTLARSA+A GVSELILVGRRDFN+FGSHGSTSHLRFRHFHSLLDA+ FLKEKDCDI
Sbjct: 16  HNVGTLARSASALGVSELILVGRRDFNSFGSHGSTSHLRFRHFHSLLDARHFLKEKDCDI 75

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLS KEC ICDFF+YIPQYG GTASLNVTV
Sbjct: 76  CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSVKECEICDFFVYIPQYGGGTASLNVTV 135

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGF ER RDGNKF+VAERP +Q +RNYC +T +SIIEERK RR+NAS 
Sbjct: 136 AASIVLHHFGVWAGFSERIRDGNKFVVAERPAQQVRRNYCTETADSIIEERKIRRQNASN 195

Query: 250 GFFDEGMIDDSTSNLLDTLFID 272
           GFFDE    +S SNLLD LF D
Sbjct: 196 GFFDESGSGESPSNLLDALFGD 217

[Close]
BLAST of ClCG05G005600 vs. NCBI nr
Match: gi|1021031996|gb|KZM89780.1| (hypothetical protein DCAR_022857 [Daucus carota subsp. sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.5e-93
Identity = 168/200 (84.00%), Postives = 183/200 (91.50%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGTLARSATAFGV+ELILVGRRDFN+FGSHGSTSH RFRHFHSL DA++FLKEKDCDI
Sbjct: 34  HNVGTLARSATAFGVTELILVGRRDFNSFGSHGSTSHCRFRHFHSLADARSFLKEKDCDI 93

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITD+AVAVNQHPF +STAFLLGNEGTGLS+KECAICDFF+YIPQYG GTASLNVT+
Sbjct: 94  CGVEITDDAVAVNQHPFTKSTAFLLGNEGTGLSSKECAICDFFVYIPQYGCGTASLNVTI 153

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLHHFGVWAGF ER RDGNKF+VAERPVKQ+ RNYC +T E+IIEERK R+ENA  
Sbjct: 154 AASIVLHHFGVWAGFSERSRDGNKFVVAERPVKQSGRNYCTETAETIIEERKLRKENALN 213

Query: 250 GFFDEGMIDDSTSNLLDTLF 270
           GFFDE +  DS SNLLD LF
Sbjct: 214 GFFDESVKQDSPSNLLDALF 233

[Close]
BLAST of ClCG05G005600 vs. NCBI nr
Match: gi|1009141791|ref|XP_015888376.1| (PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Ziziphus jujuba])

HSP 1 Score: 350.9 bits (899), Expect = 2.0e-93
Identity = 169/202 (83.66%), Postives = 186/202 (92.08%), Query Frame = 1 

Query: 70  HNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQTFLKEKDCDI 129
           HNVGT+ARSA+AFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSL +A+ FLK++DCDI
Sbjct: 16  HNVGTMARSASAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSLQEARIFLKKRDCDI 75

Query: 130 CGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTV 189
           CGVEITD AVAVNQHPFKRSTAFLLGNEGTGLSAKEC ICDFF+YIPQYG GTASLNVTV
Sbjct: 76  CGVEITDGAVAVNQHPFKRSTAFLLGNEGTGLSAKECEICDFFVYIPQYGGGTASLNVTV 135

Query: 190 AASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQAKRNYCPKTEESIIEERKSRRENASK 249
           AASIVLH FGVWAGFPER RDGNKF+VAE+PVKQA+RN+C +  +SIIEERKSRRE+AS 
Sbjct: 136 AASIVLHQFGVWAGFPERSRDGNKFVVAEKPVKQARRNFCSENADSIIEERKSRRESASN 195

Query: 250 GFFDEGMIDDSTSNLLDTLFID 272
           GFFDE   ++S+SNLLD LF D
Sbjct: 196 GFFDENGNENSSSNLLDALFDD 217

The following BLAST results are available for this feature:
BLAST of ClCG05G005600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YSGA_BACSU8.3e-0732.59Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 16... [more]
BLAST of ClCG05G005600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAH1_CUCSA1.5e-10895.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150750 PE=4 SV=1[more]
A5AVL9_VITVI6.2e-9484.65Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02300 PE=4 SV=... [more]
A0A161ZT46_DAUCA1.1e-9384.00Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022857 PE=4 SV=1[more]
A0A068TUC6_COFCA5.3e-9383.50Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025939001 PE=4 SV=1[more]
A0A061ENU9_THECC1.5e-9280.79OBP33pep like protein isoform 1 OS=Theobroma cacao GN=TCM_021087 PE=4 SV=1[more]
BLAST of ClCG05G005600 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15520.11.6e-8876.21 tRNA/rRNA methyltransferase (SpoU) family protein[more]
BLAST of ClCG05G005600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076582|ref|XP_008438758.1|3.1e-11097.04PREDICTED: rRNA methyltransferase 1, mitochondrial [Cucumis melo][more]
gi|449432771|ref|XP_004134172.1|2.2e-10895.07PREDICTED: rRNA methyltransferase 1, mitochondrial [Cucumis sativus][more]
gi|225432460|ref|XP_002278797.1|9.0e-9484.65PREDICTED: uncharacterized protein LOC100252797 isoform X1 [Vitis vinifera][more]
gi|1021031996|gb|KZM89780.1|1.5e-9384.00hypothetical protein DCAR_022857 [Daucus carota subsp. sativus][more]
gi|1009141791|ref|XP_015888376.1|2.0e-9383.66PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001537SpoU_MeTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0008173RNA methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0001510 RNA methylation
biological_process GO:0006396 RNA processing
biological_process GO:0000453 enzyme-directed rRNA 2'-O-methylation
biological_process GO:0032259 methylation
biological_process GO:0009451 RNA modification
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0070039 rRNA (guanosine-2'-O-)-methyltransferase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G005600.1ClCG05G005600.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 68..196
score: 1.5
NoneNo IPR availablePANTHERPTHR12029RNA METHYLTRANSFERASEcoord: 70..223
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G005600Csa3G150750Cucumber (Chinese Long) v2cuwcgB222
ClCG05G005600MELO3C006586Melon (DHL92) v3.5.1mewcgB427
ClCG05G005600Cla021684Watermelon (97103) v1wcgwmB286
ClCG05G005600Cla97C05G087000Watermelon (97103) v2wcgwmbB229
ClCG05G005600Bhi01G000653Wax gourdwcgwgoB426
ClCG05G005600CSPI03G13710Wild cucumber (PI 183967)cpiwcgB226
ClCG05G005600Cucsa.253780Cucumber (Gy14) v1cgywcgB451
ClCG05G005600Lsi05G014780Bottle gourd (USVL1VR-Ls)lsiwcgB333
ClCG05G005600Cp4.1LG08g04360Cucurbita pepo (Zucchini)cpewcgB787
ClCG05G005600CsGy3G013860Cucumber (Gy14) v2cgybwcgB203
ClCG05G005600MELO3C006586.2Melon (DHL92) v3.6.1medwcgB416
ClCG05G005600Carg20156Silver-seed gourdcarwcgB0807
ClCG05G005600Carg17385Silver-seed gourdcarwcgB0588
ClCG05G005600CsaV3_3G013940Cucumber (Chinese Long) v3cucwcgB225
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G005600Watermelon (97103) v2wcgwmbB238
ClCG05G005600Wax gourdwcgwgoB415
ClCG05G005600Watermelon (Charleston Gray)wcgwcgB160
ClCG05G005600Cucumber (Gy14) v1cgywcgB618
ClCG05G005600Cucurbita maxima (Rimu)cmawcgB233
ClCG05G005600Cucurbita maxima (Rimu)cmawcgB320
ClCG05G005600Cucurbita maxima (Rimu)cmawcgB737
ClCG05G005600Cucurbita maxima (Rimu)cmawcgB796
ClCG05G005600Cucurbita moschata (Rifu)cmowcgB219
ClCG05G005600Cucurbita moschata (Rifu)cmowcgB316
ClCG05G005600Cucurbita moschata (Rifu)cmowcgB743
ClCG05G005600Cucurbita moschata (Rifu)cmowcgB792
ClCG05G005600Wild cucumber (PI 183967)cpiwcgB496
ClCG05G005600Cucumber (Chinese Long) v2cuwcgB472
ClCG05G005600Melon (DHL92) v3.5.1mewcgB121
ClCG05G005600Watermelon (97103) v1wcgwmB311
ClCG05G005600Cucurbita pepo (Zucchini)cpewcgB139
ClCG05G005600Cucurbita pepo (Zucchini)cpewcgB293
ClCG05G005600Cucurbita pepo (Zucchini)cpewcgB559
ClCG05G005600Bottle gourd (USVL1VR-Ls)lsiwcgB017
ClCG05G005600Cucumber (Gy14) v2cgybwcgB433
ClCG05G005600Melon (DHL92) v3.6.1medwcgB115
ClCG05G005600Silver-seed gourdcarwcgB0072
ClCG05G005600Silver-seed gourdcarwcgB0317
ClCG05G005600Cucumber (Chinese Long) v3cucwcgB492