Carg20156 (gene) Silver-seed gourd

Overview
NameCarg20156
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptiontRNA/rRNA methyltransferase
LocationCucurbita_argyrosperma_scaffold_168 : 449161 .. 451714 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATCGAAAGCTACGTTGTGATGCATAACGTAGCCAAAAGGTACAACGTTGGTACCTTGGCCTGAAGTGTCATCGCCTTCGGTGCATCGGAGCTCATCCTCGTCGGCTGTTGGGATTTTAACGCCTTTGGTAACCATGATTCCACTTTTCATCGCCGGTTCCGCCATTTTCACTCCCTTCTCGATGCCCAAAGTTTTCTCGAGGTTATGCCCTTTTTGTTTCTTCCCTTAAGTAGTCTCAATTTGACAATAGGTTTAGTTTTGAAATTTGAATTGCCTTCTTATGTTCTGTATGAGGAGGATTGAGATATATGTGGCGTGGAGATCATTGACAACGCCTGTGGCTGTCAAAAATCGCTGTTCTTCTTGGCAACGAGGTTGGTTGATTGTTCGTTTGCATCTTATTGGCCTTTCATTGATGGTGATCCCTACATGCTTGTGCTGGAATTGTCTTTTTAATTGCAATTCTTAAATCATTGATTAGAAGTAGGAATTGGTTAATGTAATGTCTCTGTTGTTTGATCTGTACTTAATTCATTGCCAGGGAATTTTACGCTGTGCTTATTGAATTGATAGGGTTATTTTCTATATGTTGGAGTCGGTTCACAAGTTCCTTTCTAATTCCATTGATAGATATGACTTAAAAGGACTTTTTGTCTCTTCGGGTCGATCTTGTGGTGGGCAAACCATCCTTGAGACTAGTGGGGCTGGCCATGAGCATAATGAAATGAATGAGCTCTGATAGCATAGTAAAAACATGATAACTACTTAATGTTTCTCTGCCAATAATATTTGCTATAGTGCATTATGTTACCACCTTTGATGTGATGAGATTAGGACTTAGTATGGTATTATGGGCCTCTTGCTTTATTGTAGGGTCCGTCCCTGTATAATGTTCTAGGCATTAAGAGTCGGTTAGTTGCATGGTCATATGTCATCTGGACCAAATTGGATCAGAATCATTAGGAAATAATTTTGTTACACTATTTTCAGCATTGAGTGACCCTTTTGATGGTTAACATGTTGTTTTTAGGGACCAGGGCTGCAAGGGCTAACATTAGGGAATGTTCATAACGTCCTTGTTTTCTCGATATCAGTAATTACAGAACTTTTCTCCTTCTGGTAGGCTTTCTGCTGAAGAGCATGCAATCTGTGACTTCTTCATTTACTTCCCACACTAAGGTGTTGGCACTGCTTTGAATGTAGCTATAGCTGCTTCCATTGTCCTACATTTTGGTGGTAATTCATTCAGACCTGTTGCAATTTTACCTCCCCTTTTGAGTTTCTTTAGCTTACATGCCTAATATATATCACCTAAAGAATTACCAGCCTCTCTTGATATTGCTCATTCATACTTTTTGTTTTTGACCATGCAAAACCGTGAGAGAGCTCTGTAAAATTAAGCATTCAATGAAAGGAATGTAATTTGAAATACATATACATCTTAAAGGGTAAATTAAACTCTTGGTCTGATGTTCCGAACTTGAATAATCAAGTCTTCAACCTTGGGAAAATGCTCGATTTTGATTGTTCAATTTTGAAACTTAGGGACTCATTTGACATCATCTCAAACTTGATAGACCAAAAGTATAATTTAGCGTATCTATCTTAAAAGTACGTAAGGAATGGCGTTATCTGATCGAATTATTTTTACTCGTTTGTTTGATTCTCAATTCAATTATTCATTGAATTTTCCTAGAAAGTTTGTGGAATTATATTAGTTAATCAGCTATATGGTTGAATTGCAAAAAAAAAACACATGCCCACATGGGATATGGTTGATTGAGGAAATGTAGGGTTGATCGTGCTGTCTTTTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAACCTTGTACATGTAACATGATATGCTAGGAACATCGAAATATCTTTTTCGCAGTGTTTGTTTACTTCTCTCTCTTCTGACCACCGACCCCCTTCCAACCCAGATACGTCTATCCCCTCCTTTTTCTTTTGTGTTCATTTTTATTTTTTACTTTCATTACATGAGGGGGACCCAGGACAACCACCTGGAGAAAGTTCAAGATTTGATCAACTATGCTCATTGTCGCCAGAAATCAAAGCAACCTATAAAGATGGTGAAAGGAGAGATTAAATTCAACTCACAAGTGATGAAACATTTCAAAGTTTCTGTTGCACCTGCCAAGGAAAACTTCACCACAGCTAGACTCAAACTGATAAGGTATGAAAAAAGTACTCTCTCACATCATACTTATCCTTTCAGAAACAGTGAGCTTTGTCATACTCAAGAGTCAAGTCCAATTGGAAGTTTTTTTCTACGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATTTGGAAAATGGAGCTCAACAATACTTCACCATTGTCAACCTTCTTCTCAAGTAATGGAGTAGATGTTCCTTGTCTTTATGTTATGTTTCTCTCTCTCACTACACTGTTGCTTCTACTTTTTAGTTTGGCTGTTGGTGGCATCTCCATTGATTCCCACATGACTTGCTGTTGTCTCAAAGATCAAAGGGGAAACTTAGCCAATCCCCAGATTATTTAA

mRNA sequence

ATGGGGATCGAAAGCTACGTTGTGATGCATAACGTAGCCAAAAGTGTCATCGCCTTCGGTGCATCGGAGCTCATCCTCGTCGGCTGTTGGGATTTTAACGCCTTTGGTAACCATGATTCCACTTTTCATCGCCGGTTCCGCCATTTTCACTCCCTTCTCGATGCCCAAAGTTTTCTCGAGGTTATGCCCTTTTTGTTTCTTCCCTTAAGTAGTCTCAATTTGACAATAGGTTTAGTTTTGAAATTTGAATTGCCTTCTTATGTTCTGAGGATTGAGATATATGTGGCGTGGAGATCATTGACAACGCCTGTGGCTGTCAAAAATCGCTGTTCTTCTTGGCAACGAGGCTTTCTGCTGAAGAGCATGCAATCTGTGACTTCTTCATTTACTTCCCACACTAAGGACAACCACCTGGAGAAAGTTCAAGATTTGATCAACTATGCTCATTGTCGCCAGAAATCAAAGCAACCTATAAAGATGGTGAAAGGAGAGATTAAATTCAACTCACAAGTGATGAAACATTTCAAAGTTTCTGTTGCACCTGCCAAGGAAAACTTCACCACAGCTAGACTCAAACTGATAAGTTTGGCTGTTGGTGGCATCTCCATTGATTCCCACATGACTTGCTGTTGTCTCAAAGATCAAAGGGGAAACTTAGCCAATCCCCAGATTATTTAA

Coding sequence (CDS)

ATGGGGATCGAAAGCTACGTTGTGATGCATAACGTAGCCAAAAGTGTCATCGCCTTCGGTGCATCGGAGCTCATCCTCGTCGGCTGTTGGGATTTTAACGCCTTTGGTAACCATGATTCCACTTTTCATCGCCGGTTCCGCCATTTTCACTCCCTTCTCGATGCCCAAAGTTTTCTCGAGGTTATGCCCTTTTTGTTTCTTCCCTTAAGTAGTCTCAATTTGACAATAGGTTTAGTTTTGAAATTTGAATTGCCTTCTTATGTTCTGAGGATTGAGATATATGTGGCGTGGAGATCATTGACAACGCCTGTGGCTGTCAAAAATCGCTGTTCTTCTTGGCAACGAGGCTTTCTGCTGAAGAGCATGCAATCTGTGACTTCTTCATTTACTTCCCACACTAAGGACAACCACCTGGAGAAAGTTCAAGATTTGATCAACTATGCTCATTGTCGCCAGAAATCAAAGCAACCTATAAAGATGGTGAAAGGAGAGATTAAATTCAACTCACAAGTGATGAAACATTTCAAAGTTTCTGTTGCACCTGCCAAGGAAAACTTCACCACAGCTAGACTCAAACTGATAAGTTTGGCTGTTGGTGGCATCTCCATTGATTCCCACATGACTTGCTGTTGTCTCAAAGATCAAAGGGGAAACTTAGCCAATCCCCAGATTATTTAA

Protein sequence

MGIESYVVMHNVAKSVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLEVMPFLFLPLSSLNLTIGLVLKFELPSYVLRIEIYVAWRSLTTPVAVKNRCSSWQRGFLLKSMQSVTSSFTSHTKDNHLEKVQDLINYAHCRQKSKQPIKMVKGEIKFNSQVMKHFKVSVAPAKENFTTARLKLISLAVGGISIDSHMTCCCLKDQRGNLANPQII
Homology
[Close]
BLAST of Carg20156 vs. NCBI nr
Match: XP_004134172.1 (PREDICTED: rRNA methyltransferase 1, mitochondrial [Cucumis sativus] >KGN57046.1 hypothetical protein Csa_3G150750 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
          MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHS
Sbjct: 1  MGIESYVVVHNIAKRHNVGTMARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHS 60

[Close]
BLAST of Carg20156 vs. NCBI nr
Match: XP_008438758.1 (PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-14
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
          MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHS
Sbjct: 1  MGIESYVVVHNIAKRHNVGTMARSATAFGVSELILVGRRDFNAFGSHGSTSHIRFRHFHS 60

[Close]
BLAST of Carg20156 vs. NCBI nr
Match: OWM74174.1 (hypothetical protein CDL15_Pgr008486 [Punica granatum] >PKI47975.1 hypothetical protein CRG98_031639 [Punica granatum])

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
          M +ESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHS
Sbjct: 1  MAVESYVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHS 60

[Close]
BLAST of Carg20156 vs. NCBI nr
Match: XP_022138159.1 (uncharacterized protein LOC111009398 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 2  GIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSL 61
          GI+SYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSL
Sbjct: 8  GIQSYVVVHNIAKRHNIGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHSL 67

[Close]
BLAST of Carg20156 vs. NCBI nr
Match: XP_022953920.1 (uncharacterized protein LOC111456233 isoform X2 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 4.3e-13
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1   MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
           MG ESYVV+HN+AK         S  AFG SE+ILVG  DFNAFG+H ST H RFRHFHS
Sbjct: 86  MGFESYVVVHNIAKRHNVGTLARSATAFGVSEVILVGRRDFNAFGSHGSTSHVRFRHFHS 145

[Close]
BLAST of Carg20156 vs. TAIR10
Match: AT4G15520.1 (tRNA/rRNA methyltransferase (SpoU) family protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 0 

Query: 2  GIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSL 61
          G ESYVV+HN+AK         S  AFG +ELILVG  DFNAFG+H S  H RFRHFHSL
Sbjct: 3  GFESYVVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFGSHGSASHIRFRHFHSL 62

[Close]
BLAST of Carg20156 vs. TrEMBL
Match: tr|A0A0A0LAH1|A0A0A0LAH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150750 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
          MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHS
Sbjct: 1  MGIESYVVVHNIAKRHNVGTMARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHS 60

[Close]
BLAST of Carg20156 vs. TrEMBL
Match: tr|A0A1S3AXA1|A0A1S3AXA1_CUCME (putative TrmH family tRNA/rRNA methyltransferase OS=Cucumis melo OX=3656 GN=LOC103483771 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
          MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHS
Sbjct: 1  MGIESYVVVHNIAKRHNVGTMARSATAFGVSELILVGRRDFNAFGSHGSTSHIRFRHFHS 60

[Close]
BLAST of Carg20156 vs. TrEMBL
Match: tr|A0A218WMV6|A0A218WMV6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr008486 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
          M +ESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHS
Sbjct: 1  MAVESYVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNAFGSHGSTSHLRFRHFHS 60

[Close]
BLAST of Carg20156 vs. TrEMBL
Match: tr|A0A067L6D1|A0A067L6D1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02058 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.7e-13
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
          MGIESY+V+HN+AK         S  AFG +ELILVG  DFNAFG+H ST H RFRHFHS
Sbjct: 1  MGIESYIVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFGSHGSTSHLRFRHFHS 60

[Close]
BLAST of Carg20156 vs. TrEMBL
Match: tr|W9S2T6|W9S2T6_9ROSA (tRNA (Guanosine(18)-2'-O)-methyltransferase OS=Morus notabilis OX=981085 GN=L484_011293 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 1  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHS 60
          M +ESYVV+HN+AK         S  AFG SELILVG  DFN+FG+H ST H RFRHFHS
Sbjct: 1  MAVESYVVVHNIAKRHNIGTLARSATAFGVSELILVGRRDFNSFGSHGSTSHLRFRHFHS 60

The following BLAST results are available for this feature:
BLAST of Carg20156 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134172.12.3e-1468.12PREDICTED: rRNA methyltransferase 1, mitochondrial [Cucumis sativus] >KGN57046.1... [more]
XP_008438758.13.0e-1468.12PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Cucumis melo][more]
OWM74174.11.9e-1365.22hypothetical protein CDL15_Pgr008486 [Punica granatum] >PKI47975.1 hypothetical ... [more]
XP_022138159.11.9e-1366.18uncharacterized protein LOC111009398 [Momordica charantia][more]
XP_022953920.14.3e-1363.77uncharacterized protein LOC111456233 isoform X2 [Cucurbita moschata][more]
BLAST of Carg20156 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15520.11.6e-1457.35tRNA/rRNA methyltransferase (SpoU) family protein[more]
BLAST of Carg20156 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg20156 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAH1|A0A0A0LAH1_CUCSA1.5e-1468.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150750 PE=4 SV=1[more]
tr|A0A1S3AXA1|A0A1S3AXA1_CUCME2.0e-1468.12putative TrmH family tRNA/rRNA methyltransferase OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A218WMV6|A0A218WMV6_PUNGR1.3e-1365.22Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr008486 PE=4 SV=1[more]
tr|A0A067L6D1|A0A067L6D1_JATCU3.7e-1362.32Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02058 PE=4 SV=1[more]
tr|W9S2T6|W9S2T6_9ROSA8.3e-1362.32tRNA (Guanosine(18)-2'-O)-methyltransferase OS=Morus notabilis OX=981085 GN=L484... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009451 RNA modification
biological_process GO:0006396 RNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
molecular_function GO:0008173 RNA methyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20156-RACarg20156-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20156Cla021684Watermelon (97103) v1carwmB0834
Carg20156Csa3G150750Cucumber (Chinese Long) v2carcuB0854
Carg20156MELO3C006586Melon (DHL92) v3.5.1carmeB0828
Carg20156ClCG05G005600Watermelon (Charleston Gray)carwcgB0807
Carg20156CSPI03G13710Wild cucumber (PI 183967)carcpiB0874
Carg20156Cucsa.253780Cucumber (Gy14) v1carcgyB0960
Carg20156CmaCh14G016580Cucurbita maxima (Rimu)carcmaB1153
Carg20156CmoCh14G017030Cucurbita moschata (Rifu)carcmoB1123
Carg20156Lsi05G014780Bottle gourd (USVL1VR-Ls)carlsiB761
Carg20156Cp4.1LG08g04360Cucurbita pepo (Zucchini)carcpeB1165
Carg20156CsGy3G013860Cucumber (Gy14) v2carcgybB0828
Carg20156MELO3C006586.2Melon (DHL92) v3.6.1carmedB0840
Carg20156CsaV3_3G013940Cucumber (Chinese Long) v3carcucB0878
Carg20156Cla97C05G087000Watermelon (97103) v2carwmbB0867
Carg20156Bhi01G000653Wax gourdcarwgoB0972
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg20156Carg17385Silver-seed gourdcarcarB544
The following block(s) are covering this gene:
GeneOrganismBlock
Carg20156Silver-seed gourdcarcarB087
Carg20156Cucurbita maxima (Rimu)carcmaB1154
Carg20156Cucurbita maxima (Rimu)carcmaB1155
Carg20156Cucurbita maxima (Rimu)carcmaB1156
Carg20156Cucurbita moschata (Rifu)carcmoB1124
Carg20156Cucurbita moschata (Rifu)carcmoB1125
Carg20156Cucurbita moschata (Rifu)carcmoB1126
Carg20156Cucurbita pepo (Zucchini)carcpeB1163
Carg20156Cucurbita pepo (Zucchini)carcpeB1164
Carg20156Bottle gourd (USVL1VR-Ls)carlsiB760
Carg20156Melon (DHL92) v3.5.1carmeB0827
Carg20156Melon (DHL92) v3.6.1carmedB0839
Carg20156Watermelon (Charleston Gray)carwcgB0808
Carg20156Watermelon (97103) v1carwmB0835
Carg20156Watermelon (97103) v2carwmbB0868
Carg20156Wax gourdcarwgoB0970