Carg17338 (gene) Silver-seed gourd

Overview
NameCarg17338
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranslationally-controlled tumor protein homolog
LocationCucurbita_argyrosperma_scaffold_092 : 91617 .. 92786 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGTGTACATGGATTCGTTCCCTTCATTGGTGACAAAGCAATTGTTTTTAATTTTGATATCAGGTGACGAGCTTCTCTCGGATTCGTTCCCATACAAGGAACTCGAGAATGGAATGATCTGGGAAGTTGAGGGAAAGGTCAGTAGACTTTGTTTATTGTATGCTTTTTCACTTTTTCATGGAAAGAAAACGTCGTGTCTTAATGCTACCGAGTATATAGTTACTGAAACTAAGTGTTAGCCTAACTGAATGAGTATTCAGCACAATACTTTACTACTTGAATCATTATGCTGCAGTGGGTCGTTCAAGGAGCGGTCGATGTGGACATTGGTGCAAATCCTTCTGCTGAAGGTGACGGTGAGGATGAAGGGGTTGATGACCAAGCTGTGAAGGTGGTTGACATTGTCGACACCTTCAGGCTTCAGGTAGGCATGCCTTCTGGTTAAGACATTCAAGGATTGTTGCAAGTTTTTAATTTTAGGGCATACTTGGGAGTGATTTTATTCAAATCACTGCTATTAAATGTTTCCCATACTTGACCTAAATCTATTTTTCTTTCCACTTTGGGATTCCAGGAGCAACCTACCATGGACAAGAAGCAGTTCATTGCATACATTAAGAAGTTTATCAAATTGCTGACACCTAAGCTGGAAGGAGAGAAACAGGAGGCATTTAAGAAGAACATTGAAGGAGCAACTAAGTTTCTGCTTCCAAAGCTCAAGGACTTCCAGTTGTAAGTACTTCCCTTTGTTTAGGCTATCTTTTATTGGCATTACATCTTTAGTAATAGAAATATTTGAACTCAACACAGCAAACCAAATCTTACCATTTGTGATAATTTACGTTCTTTGTATTTTAACATTGCTCTTGAACACCCTTTTTTTGAATCAATATGTGATGGATGGATGAAACCGGAGCGTTCGAGCTTTTAGTGCTTCTCCTAAAAGCAGCACTTACAGAACCTAGTGTTTTTAGAATTTTCAATATTCTCGAAGTTTTAAGTTTTCTTATCATTAGAATGATTCCTAATTGTATTATATGTTCTTTTGCAGCTTCGTGGGAGAGAGCATGCATGACGATTCCTGCATCGTGTTTGCATACTACAGGGAAGGAGCCACTGACCCAACATTTTTATACCTTGCCCCAGCTTTGAAGGAAGTCAAGTGCTGA

mRNA sequence

TTGGTGTACATGGATTCGTTCCCTTCATTGGTGACAAAGCAATTGTTTTTAATTTTGATATCAGGTGACGAGCTTCTCTCGGATTCGTTCCCATACAAGGAACTCGAGAATGGAATGATCTGGGAAGTTGAGGGAAAGTGGGTCGTTCAAGGAGCGGTCGATGTGGACATTGGTGCAAATCCTTCTGCTGAAGGTGACGGTGAGGATGAAGGGGTTGATGACCAAGCTGTGAAGGTGGTTGACATTGTCGACACCTTCAGGCTTCAGGAGCAACCTACCATGGACAAGAAGCAGTTCATTGCATACATTAAGAAGTTTATCAAATTGCTGACACCTAAGCTGGAAGGAGAGAAACAGGAGGCATTTAAGAAGAACATTGAAGGAGCAACTAAGTTTCTGCTTCCAAAGCTCAAGGACTTCCAGTTCTTCGTGGGAGAGAGCATGCATGACGATTCCTGCATCGTGTTTGCATACTACAGGGAAGGAGCCACTGACCCAACATTTTTATACCTTGCCCCAGCTTTGAAGGAAGTCAAGTGCTGA

Coding sequence (CDS)

TTGGTGTACATGGATTCGTTCCCTTCATTGGTGACAAAGCAATTGTTTTTAATTTTGATATCAGGTGACGAGCTTCTCTCGGATTCGTTCCCATACAAGGAACTCGAGAATGGAATGATCTGGGAAGTTGAGGGAAAGTGGGTCGTTCAAGGAGCGGTCGATGTGGACATTGGTGCAAATCCTTCTGCTGAAGGTGACGGTGAGGATGAAGGGGTTGATGACCAAGCTGTGAAGGTGGTTGACATTGTCGACACCTTCAGGCTTCAGGAGCAACCTACCATGGACAAGAAGCAGTTCATTGCATACATTAAGAAGTTTATCAAATTGCTGACACCTAAGCTGGAAGGAGAGAAACAGGAGGCATTTAAGAAGAACATTGAAGGAGCAACTAAGTTTCTGCTTCCAAAGCTCAAGGACTTCCAGTTCTTCGTGGGAGAGAGCATGCATGACGATTCCTGCATCGTGTTTGCATACTACAGGGAAGGAGCCACTGACCCAACATTTTTATACCTTGCCCCAGCTTTGAAGGAAGTCAAGTGCTGA

Protein sequence

LVYMDSFPSLVTKQLFLILISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC
Homology
[Close]
BLAST of Carg17338 vs. NCBI nr
Match: XP_022937958.1 (translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_022973732.1 translationally-controlled tumor protein homolog [Cucurbita maxima] >XP_022975167.1 translationally-controlled tumor protein homolog [Cucurbita maxima] >XP_023539947.1 translationally-controlled tumor protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.2 bits (835), Expect = 6.8e-86
Identity = 160/162 (98.77%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC
Sbjct: 127 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]
BLAST of Carg17338 vs. NCBI nr
Match: Q2PS27.1 (RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP; AltName: Full=CmTCTP >ABC02401.1 translationally controlled tumor protein [Cucurbita maxima])

HSP 1 Score: 324.7 bits (831), Expect = 2.0e-85
Identity = 159/162 (98.15%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DF+FFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC
Sbjct: 127 DFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]
BLAST of Carg17338 vs. NCBI nr
Match: XP_022956345.1 (translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_023526154.1 translationally-controlled tumor protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 6.8e-78
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L+SGDELLSDSFPYKE+ENGMIWEV+GKWVVQGAVDVDIGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAVDVDIGANPSAEGAGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP +DKK FIAYIKK+IKL+TPKLEGEKQEAFKKNIEGATK+LL KLK
Sbjct: 67  VVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLVTPKLEGEKQEAFKKNIEGATKYLLAKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDDS +VFAYY+EGATDPTFLYLAP LKEVKC
Sbjct: 127 DLQFFVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKEVKC 168

[Close]
BLAST of Carg17338 vs. NCBI nr
Match: PIA44396.1 (hypothetical protein AQUCO_01700176v1 [Aquilegia coerulea])

HSP 1 Score: 289.3 bits (739), Expect = 9.2e-75
Identity = 140/162 (86.42%), Postives = 150/162 (92.59%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+A+IK+FIK LTPKLEGE QE FKK IEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVAFIKRFIKQLTPKLEGEAQEQFKKGIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESMHDDS +V AYY+EGATDPTFLY A  LKEVKC
Sbjct: 127 DFQFFVGESMHDDSGLVLAYYKEGATDPTFLYFAHGLKEVKC 168

[Close]
BLAST of Carg17338 vs. NCBI nr
Match: XP_016720885.1 (PREDICTED: translationally-controlled tumor protein homolog [Gossypium hirsutum] >XP_017642651.1 PREDICTED: translationally-controlled tumor protein homolog [Gossypium arboreum] >KHG20862.1 Translationally-controlled tumor [Gossypium arboreum] >PPS02243.1 hypothetical protein GOBAR_AA18416 [Gossypium barbadense])

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 140/162 (86.42%), Postives = 149/162 (91.98%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           LISGDELLSDSFPYKE+ENGM+WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LISGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ +IKKFIK LTPKL+ EKQE+FKKNIEGATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPPFDKKQFVVFIKKFIKNLTPKLDAEKQESFKKNIEGATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD C+VFAYY++GA DPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGCLVFAYYKDGAVDPTFLYFAYALKEVKC 168

[Close]
BLAST of Carg17338 vs. TAIR10
Match: AT3G16640.1 (translationally controlled tumor protein)

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-71
Identity = 129/162 (79.63%), Postives = 141/162 (87.04%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE+ENG++WEVEGKWV  GAVDV+IGANPSAE  GEDEGVDD   K
Sbjct: 7   LLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQPT DKK FIAYIKK+IKLLTPKL  E Q  FKK IEGATKFLLP+L 
Sbjct: 67  VVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLS 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGE MHDDS +VFAYY+EG+T+PTFLY A  LKEVKC
Sbjct: 127 DFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168

[Close]
BLAST of Carg17338 vs. TAIR10
Match: AT3G05540.1 (Methionine sulfoxide reductase (MSS4-like) family protein)

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-68
Identity = 123/163 (75.46%), Postives = 145/163 (88.96%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           +++GDELLSDSFPYKE+ENGM+WEVEGKWVV+GA+D DIGANP  EG GEDEGVDDQAVK
Sbjct: 7   ILTGDELLSDSFPYKEIENGMLWEVEGKWVVKGAMDFDIGANPGEEG-GEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDI+DTFRLQEQP+ DKKQF+ ++K++IK L+PKL+ E QE FKK+IE ATKFL+ KLK
Sbjct: 67  VVDIIDTFRLQEQPSFDKKQFVMFMKRYIKQLSPKLDSENQELFKKHIESATKFLMSKLK 126

Query: 139 DFQFFVGESMH-DDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESM  ++  +VFAYYREGATDPTFLYLA  LKE+KC
Sbjct: 127 DFQFFVGESMEGEEGSLVFAYYREGATDPTFLYLAYGLKEIKC 168

[Close]
BLAST of Carg17338 vs. Swiss-Prot
Match: sp|Q2PS27|TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima OX=3661 GN=TCTP PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 6.5e-88
Identity = 159/162 (98.15%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DF+FFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC
Sbjct: 127 DFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]
BLAST of Carg17338 vs. Swiss-Prot
Match: sp|P43349|TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN=TCTP PE=2 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 2.5e-76
Identity = 135/162 (83.33%), Postives = 150/162 (92.59%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE++NGM+WEV+GKWVVQGAVDV+IGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ YIK++IK LTPKLEGE QEAFKKNIE ATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGE MHDDS +VFAYY++G+ DPTFLYLAP LKE+KC
Sbjct: 127 DFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168

[Close]
BLAST of Carg17338 vs. Swiss-Prot
Match: sp|Q9M5I8|TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo OX=3656 GN=TCTP PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.3e-75
Identity = 136/162 (83.95%), Postives = 150/162 (92.59%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L+SGDELLSDSFPYKE+ENGMIWEVEGKWVV+GAVDVDIGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LVSGDELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP+MDKK F++ IKK+IK LTP L+GE+QEAFK  IEGA K+LLPK+K
Sbjct: 67  VVDIVDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESM DDS +VFAYY+EGATDPTFLY+AP LKEVKC
Sbjct: 127 DLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168

[Close]
BLAST of Carg17338 vs. Swiss-Prot
Match: sp|Q9ZSW9|TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 GN=TCTP PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.4e-74
Identity = 136/162 (83.95%), Postives = 147/162 (90.74%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE+ NG++WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ Y+K+FIKLLTPKL+ EKQE+FKKNIEGATKFLL KL 
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLS 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD  +VFAYYR GATDPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168

[Close]
BLAST of Carg17338 vs. Swiss-Prot
Match: sp|Q9M5G3|TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare OX=4513 GN=TCTP PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 3.4e-73
Identity = 133/161 (82.61%), Postives = 145/161 (90.06%), Query Frame = 0 

Query: 20  ISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKV 79
           +SGDELLSDSFPY+ELENG++WEV+G WVVQGAVDVDIGANPSAEG GEDEGVDDQAVKV
Sbjct: 8   LSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKV 67

Query: 80  VDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKD 139
           VDIVDTFRLQEQP  DKKQFIAYIK++IK LT KLEGE+ +AFKKN+E ATK+LL KLKD
Sbjct: 68  VDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKD 127

Query: 140 FQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
            QFFVGESMHDD  +VFAYYREGA DPTFLY A  LKEVKC
Sbjct: 128 LQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168

[Close]
BLAST of Carg17338 vs. TrEMBL
Match: tr|A0A2G5DLN3|A0A2G5DLN3_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01700176v1 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.1e-75
Identity = 140/162 (86.42%), Postives = 150/162 (92.59%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+A+IK+FIK LTPKLEGE QE FKK IEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVAFIKRFIKQLTPKLEGEAQEQFKKGIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESMHDDS +V AYY+EGATDPTFLY A  LKEVKC
Sbjct: 127 DFQFFVGESMHDDSGLVLAYYKEGATDPTFLYFAHGLKEVKC 168

[Close]
BLAST of Carg17338 vs. TrEMBL
Match: tr|A0A0B0P7K2|A0A0B0P7K2_GOSAR (Translationally-controlled tumor OS=Gossypium arboreum OX=29729 GN=F383_02604 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-74
Identity = 140/162 (86.42%), Postives = 149/162 (91.98%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           LISGDELLSDSFPYKE+ENGM+WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LISGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ +IKKFIK LTPKL+ EKQE+FKKNIEGATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPPFDKKQFVVFIKKFIKNLTPKLDAEKQESFKKNIEGATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD C+VFAYY++GA DPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGCLVFAYYKDGAVDPTFLYFAYALKEVKC 168

[Close]
BLAST of Carg17338 vs. TrEMBL
Match: tr|A0A1U8M265|A0A1U8M265_GOSHI (translationally-controlled tumor protein homolog OS=Gossypium hirsutum OX=3635 GN=LOC107933238 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-74
Identity = 140/162 (86.42%), Postives = 149/162 (91.98%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           LISGDELLSDSFPYKE+ENGM+WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LISGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ +IKKFIK LTPKL+ EKQE+FKKNIEGATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPPFDKKQFVVFIKKFIKNLTPKLDAEKQESFKKNIEGATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD C+VFAYY++GA DPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGCLVFAYYKDGAVDPTFLYFAYALKEVKC 168

[Close]
BLAST of Carg17338 vs. TrEMBL
Match: tr|A0A2P5XFX8|A0A2P5XFX8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA18416 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-74
Identity = 140/162 (86.42%), Postives = 149/162 (91.98%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           LISGDELLSDSFPYKE+ENGM+WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LISGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ +IKKFIK LTPKL+ EKQE+FKKNIEGATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPPFDKKQFVVFIKKFIKNLTPKLDAEKQESFKKNIEGATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD C+VFAYY++GA DPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGCLVFAYYKDGAVDPTFLYFAYALKEVKC 168

[Close]
BLAST of Carg17338 vs. TrEMBL
Match: tr|Q3HVK2|Q3HVK2_SOLTU (p23 tumor protein-like protein OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.9e-74
Identity = 136/162 (83.95%), Postives = 151/162 (93.21%), Query Frame = 0 

Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKELENGM+WEV+GKWVVQGAVDV+IGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKELENGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ YIK++IK LTPKLEGE Q+AFKKNIE ATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQDAFKKNIESATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESM DDS +VFA+Y++G+ DPTFLYLAP LKE+KC
Sbjct: 127 DFQFFVGESMSDDSALVFAFYKDGSADPTFLYLAPGLKEIKC 168

The following BLAST results are available for this feature:
BLAST of Carg17338 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937958.16.8e-8698.77translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_022973... [more]
Q2PS27.12.0e-8598.15RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP; AltN... [more]
XP_022956345.16.8e-7890.12translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_023526... [more]
PIA44396.19.2e-7586.42hypothetical protein AQUCO_01700176v1 [Aquilegia coerulea][more]
XP_016720885.11.6e-7486.42PREDICTED: translationally-controlled tumor protein homolog [Gossypium hirsutum]... [more]
BLAST of Carg17338 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16640.12.0e-7179.63translationally controlled tumor protein[more]
AT3G05540.11.6e-6875.46Methionine sulfoxide reductase (MSS4-like) family protein[more]
BLAST of Carg17338 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q2PS27|TCTP_CUCMA6.5e-8898.15Translationally-controlled tumor protein homolog OS=Cucurbita maxima OX=3661 GN=... [more]
sp|P43349|TCTP_SOLTU2.5e-7683.33Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN... [more]
sp|Q9M5I8|TCTP_CUCME6.3e-7583.95Translationally-controlled tumor protein homolog OS=Cucumis melo OX=3656 GN=TCTP... [more]
sp|Q9ZSW9|TCTP_HEVBR1.4e-7483.95Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 G... [more]
sp|Q9M5G3|TCTP_HORVU3.4e-7382.61Translationally-controlled tumor protein homolog OS=Hordeum vulgare OX=4513 GN=T... [more]
BLAST of Carg17338 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2G5DLN3|A0A2G5DLN3_AQUCA6.1e-7586.42Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01700176v1 PE=3... [more]
tr|A0A0B0P7K2|A0A0B0P7K2_GOSAR1.0e-7486.42Translationally-controlled tumor OS=Gossypium arboreum OX=29729 GN=F383_02604 PE... [more]
tr|A0A1U8M265|A0A1U8M265_GOSHI1.0e-7486.42translationally-controlled tumor protein homolog OS=Gossypium hirsutum OX=3635 G... [more]
tr|A0A2P5XFX8|A0A2P5XFX8_GOSBA1.0e-7486.42Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA18416 PE=3 SV... [more]
tr|Q3HVK2|Q3HVK2_SOLTU3.9e-7483.95p23 tumor protein-like protein OS=Solanum tuberosum OX=4113 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011057Mss4-like_sf
IPR034737TCTP
IPR018103Translation_control_tumour_CS
IPR011323Mss4/transl-control_tumour
IPR018105Translational_control_tumour_p
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17338-RACarg17338-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018105Translationally controlled tumour proteinPRINTSPR01653TCTPROTEINcoord: 13..33
score: 46.6
coord: 72..91
score: 60.36
coord: 58..69
score: 65.48
IPR018105Translationally controlled tumour proteinPFAMPF00838TCTPcoord: 18..176
e-value: 3.3E-50
score: 170.5
IPR018105Translationally controlled tumour proteinPANTHERPTHR11991TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATEDcoord: 19..180
IPR011323Mss4/translationally controlled tumour-associated TCTPGENE3DG3DSA:2.170.150.10coord: 14..180
e-value: 2.8E-52
score: 179.2
NoneNo IPR availablePANTHERPTHR11991:SF0TRANSLATIONALLY-CONTROLLED TUMOR PROTEINcoord: 19..180
IPR018103Translationally controlled tumour protein, conserved sitePROSITEPS01003TCTP_2coord: 137..159
IPR034737Translationally controlled tumour protein (TCTP) domainPROSITEPS51797TCTP_3coord: 9..180
score: 53.826
IPR011057Mss4-like superfamilySUPERFAMILYSSF51316Mss4-likecoord: 19..180

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17338Cla021747Watermelon (97103) v1carwmB0603
Carg17338Csa3G154390Cucumber (Chinese Long) v2carcuB0633
Carg17338MELO3C006670Melon (DHL92) v3.5.1carmeB0610
Carg17338ClCG05G006160Watermelon (Charleston Gray)carwcgB0588
Carg17338CSPI03G14490Wild cucumber (PI 183967)carcpiB0639
Carg17338Cucsa.253020Cucumber (Gy14) v1carcgyB0681
Carg17338CmaCh06G015040Cucurbita maxima (Rimu)carcmaB0849
Carg17338CmaCh14G016170Cucurbita maxima (Rimu)carcmaB0847
Carg17338CmaCh00G004010Cucurbita maxima (Rimu)carcmaB0846
Carg17338CmoCh06G015020Cucurbita moschata (Rifu)carcmoB0825
Carg17338CmoCh14G016540Cucurbita moschata (Rifu)carcmoB0823
Carg17338Cp4.1LG03g11490Cucurbita pepo (Zucchini)carcpeB0860
Carg17338Cp4.1LG08g04970Cucurbita pepo (Zucchini)carcpeB0861
Carg17338CsGy3G014630Cucumber (Gy14) v2carcgybB0605
Carg17338MELO3C006670.2Melon (DHL92) v3.6.1carmedB0616
Carg17338CsaV3_3G014730Cucumber (Chinese Long) v3carcucB0640
Carg17338Cla97C05G087680Watermelon (97103) v2carwmbB0631
Carg17338Bhi01G000726Wax gourdcarwgoB0722
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17338Carg20104Silver-seed gourdcarcarB544
The following block(s) are covering this gene:
GeneOrganismBlock
Carg17338Silver-seed gourdcarcarB083
Carg17338Silver-seed gourdcarcarB543
Carg17338Cucurbita maxima (Rimu)carcmaB0848
Carg17338Cucurbita maxima (Rimu)carcmaB0850
Carg17338Cucurbita moschata (Rifu)carcmoB0824
Carg17338Cucurbita moschata (Rifu)carcmoB0826
Carg17338Cucurbita pepo (Zucchini)carcpeB0857
Carg17338Cucurbita pepo (Zucchini)carcpeB0859
Carg17338Bottle gourd (USVL1VR-Ls)carlsiB550
Carg17338Bottle gourd (USVL1VR-Ls)carlsiB552
Carg17338Melon (DHL92) v3.5.1carmeB0609
Carg17338Melon (DHL92) v3.6.1carmedB0615
Carg17338Watermelon (Charleston Gray)carwcgB0589
Carg17338Watermelon (97103) v1carwmB0604
Carg17338Watermelon (97103) v2carwmbB0632
Carg17338Wax gourdcarwgoB0720