CmaCh14G016170 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G016170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Translationally controlled tumor protein
Location	Cma_Chr14 : 12137869 .. 12138800 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTTTTTTTATTGTCGGCGCCGTCGGCGGTGGCAAATCCTTATTATCCTTCCTCCTGCTTCCGGCGCGGGCGCCGGCCTCTGTAAGAAAATTGAAGTTGTGTGGGGCTGGATAGACAGATATTTATTTGTTCTGTCTTGCAGACCGAAATTATTTTAATATTTTACAAAATTACGTAAAAGAATTAAGTTTTCTTTTTTCTTATTTATTTATTTTGTTTTTATTTTTTATTTTTAAATATATATACAAAATATTATTTTATAATTTTATTTCTAAAATGTATACTAAAAAATTATTTTAATTTATCCATTTTCCGCCCACGTGTTTGGTCTTAAGAATGCTGGTTTTAAGAATGAGTGATTGCCATTTTCCGACCCTTACTGCCCAACCGGATAGCGGACAGCTAATGCGTTCCACTTATTGAACAGAGTTCTATGGTCTGTCCGCGATCCCTAGATACTGAAGGTGTCCTTGGGGTGATCTCGTTATTCCTATGGGGTGGAGACGTTGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGGATTTCGCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCTGTTCGCAAGAGTCAACTTGATCCTCTTCTTCCAGGATCCCAGATGAGGGAACCCTAAGAGAGCCGCCGACTCCAACTACCGTTCATGTACGATCCATACTAGATATATATATATATCAAATATGTTGATAAAAATCTAATCTAAATTCTAACCTGTTGTGGTCGATTTGATTCGAGTTTTTGTATCACTAGAACGATATCTAACATACGATATGTTGTTTTGCAGCTTCGTCGGGGAGAGTATGCATGACGATAGCTCTATGGTATTTGCATACTACAAGGAAGGAGCCACTGACCCAACATTTTTATACCTCGCCCCAGGTTTGAAGGAACTCAAGTGCTGA

mRNA sequence

ATGGAGATTTTTTTTATTGTCGGCGCCGTCGGCGGTGGCAAATCCTTATTATCCTTCCTCCTGCTTCCGGCGCGGGCGCCGGCCTCTGTAAGAAAATTGAACTTCGTCGGGGAGAGTATGCATGACGATAGCTCTATGGTATTTGCATACTACAAGGAAGGAGCCACTGACCCAACATTTTTATACCTCGCCCCAGGTTTGAAGGAACTCAAGTGCTGA

Coding sequence (CDS)

ATGGAGATTTTTTTTATTGTCGGCGCCGTCGGCGGTGGCAAATCCTTATTATCCTTCCTCCTGCTTCCGGCGCGGGCGCCGGCCTCTGTAAGAAAATTGAACTTCGTCGGGGAGAGTATGCATGACGATAGCTCTATGGTATTTGCATACTACAAGGAAGGAGCCACTGACCCAACATTTTTATACCTCGCCCCAGGTTTGAAGGAACTCAAGTGCTGA

Protein sequence

MEIFFIVGAVGGGKSLLSFLLLPARAPASVRKLNFVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC

Homology

[Close]

BLAST of CmaCh14G016170 vs. Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.1e-14
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESM DDS+MVFAYYKEGATDPTFLY+APGLKE+KC
Sbjct: 131 FVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDDS +VFAYY+EGATDPTFLYLAP LKE+KC
Sbjct: 131 FVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-13
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDD SMVFAYYK+GATDPTFLY A GLKE+KC
Sbjct: 130 FVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167

[Close]

BLAST of CmaCh14G016170 vs. Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-13
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGE MHDDS++VFAYYK+G+ DPTFLYLAPGLKE+KC
Sbjct: 131 FVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168

[Close]

BLAST of CmaCh14G016170 vs. Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDD ++VFAYYKEG+ DP FLY+APGLKE+KC
Sbjct: 131 FVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168

[Close]

BLAST of CmaCh14G016170 vs. TrEMBL
Match: A0A068V9P5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00000655001 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDD S+VFAYYKEGATDPTFLYLAPGLKE+KC
Sbjct: 131 FVGESMHDDGSIVFAYYKEGATDPTFLYLAPGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. TrEMBL
Match: B3TLX6_ELAGV (Translationally controlled tumor protein OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDD SMVFAYYKEGATDPTFLYLA GLKE+KC
Sbjct: 131 FVGESMHDDGSMVFAYYKEGATDPTFLYLAYGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. TrEMBL
Match: A8VRK8_SALMI (Translationally controlled tumor protein OS=Salvia miltiorrhiza GN=TCTP PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDDSS+VFAYYKEGATDPTFLY A GLKE+KC
Sbjct: 131 FVGESMHDDSSLVFAYYKEGATDPTFLYFAHGLKEIKC 168

[Close]

BLAST of CmaCh14G016170 vs. TrEMBL
Match: A6ZI67_SALMI (Putative translationally controlled tumor protein OS=Salvia miltiorrhiza PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDDSS+VFAYYKEGATDPTFLY A GLKE+KC
Sbjct: 131 FVGESMHDDSSLVFAYYKEGATDPTFLYFAHGLKEIKC 168

[Close]

BLAST of CmaCh14G016170 vs. TrEMBL
Match: A0A0A0L917_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154390 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-12
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESM DDS+MVFAYYKEGATDPTFLY+APGLKE+KC
Sbjct: 131 FVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. TAIR10
Match: AT3G16640.1 (AT3G16640.1 translationally controlled tumor protein)

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-13
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGE MHDDS++VFAYYKEG+T+PTFLY A GLKE+KC
Sbjct: 131 FVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. TAIR10
Match: AT3G05540.1 (AT3G05540.1 Methionine sulfoxide reductase (MSS4-like) family protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-11
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 35  FVGESMH-DDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESM  ++ S+VFAYY+EGATDPTFLYLA GLKE+KC
Sbjct: 130 FVGESMEGEEGSLVFAYYREGATDPTFLYLAYGLKEIKC 168

[Close]

BLAST of CmaCh14G016170 vs. NCBI nr
Match: gi|661879064|emb|CDP17189.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDD S+VFAYYKEGATDPTFLYLAPGLKE+KC
Sbjct: 131 FVGESMHDDGSIVFAYYKEGATDPTFLYLAPGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. NCBI nr
Match: gi|720043403|ref|XP_010269549.1| (PREDICTED: translationally-controlled tumor protein homolog [Nelumbo nucifera])

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDDS+MVFAYYKEGATDPTFLYLA GLKE+KC
Sbjct: 131 FVGESMHDDSTMVFAYYKEGATDPTFLYLAYGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. NCBI nr
Match: gi|698533520|ref|XP_009763574.1| (PREDICTED: translationally-controlled tumor protein homolog [Nicotiana sylvestris])

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDD ++VFAYYK+GATDPTFLYLAPGLKE+KC
Sbjct: 131 FVGESMHDDGALVFAYYKDGATDPTFLYLAPGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. NCBI nr
Match: gi|697106870|ref|XP_009607260.1| (PREDICTED: translationally-controlled tumor protein homolog [Nicotiana tomentosiformis])

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDD ++VFAYYK+GATDPTFLYLAPGLKE+KC
Sbjct: 131 FVGESMHDDGALVFAYYKDGATDPTFLYLAPGLKEVKC 168

[Close]

BLAST of CmaCh14G016170 vs. NCBI nr
Match: gi|743768348|ref|XP_010914451.1| (PREDICTED: translationally-controlled tumor protein homolog [Elaeis guineensis])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1


Query: 35  FVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKELKC 73
           FVGESMHDD SMVFAYYKEGATDPTFLYLA GLKE+KC
Sbjct: 132 FVGESMHDDGSMVFAYYKEGATDPTFLYLAYGLKEVKC 169

The following BLAST results are available for this feature:

BLAST of CmaCh14G016170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCTP_CUCME	7.1e-14	89.47	Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV...	[more]
TCTP_CUCMA	1.6e-13	86.84	Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=...	[more]
TCTP_PSEMZ	2.1e-13	86.84	Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCT...	[more]
TCTP_SOLTU	2.7e-13	81.58	Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE...	[more]
TCTP_SOLLC	1.0e-12	78.95	Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP...	[more]

BLAST of CmaCh14G016170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068V9P5_COFCA	1.2e-12	92.11	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00000655001 PE=3 SV=1	[more]
B3TLX6_ELAGV	6.0e-12	92.11	Translationally controlled tumor protein OS=Elaeis guineensis var. tenera PE=2 S...	[more]
A8VRK8_SALMI	7.9e-12	89.47	Translationally controlled tumor protein OS=Salvia miltiorrhiza GN=TCTP PE=2 SV=...	[more]
A6ZI67_SALMI	7.9e-12	89.47	Putative translationally controlled tumor protein OS=Salvia miltiorrhiza PE=2 SV...	[more]
A0A0A0L917_CUCSA	7.9e-12	89.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154390 PE=3 SV=1	[more]

BLAST of CmaCh14G016170 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16640.1	2.9e-13	78.95	translationally controlled tumor protein	[more]
AT3G05540.1	2.0e-11	76.92	Methionine sulfoxide reductase (MSS4-like) family protein	[more]

BLAST of CmaCh14G016170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661879064\|emb\|CDP17189.1\|	1.7e-12	92.11	unnamed protein product [Coffea canephora]	[more]
gi\|720043403\|ref\|XP_010269549.1\|	6.6e-12	92.11	PREDICTED: translationally-controlled tumor protein homolog [Nelumbo nucifera]	[more]
gi\|698533520\|ref\|XP_009763574.1\|	6.6e-12	86.84	PREDICTED: translationally-controlled tumor protein homolog [Nicotiana sylvestri...	[more]
gi\|697106870\|ref\|XP_009607260.1\|	6.6e-12	86.84	PREDICTED: translationally-controlled tumor protein homolog [Nicotiana tomentosi...	[more]
gi\|743768348\|ref\|XP_010914451.1\|	8.6e-12	92.11	PREDICTED: translationally-controlled tumor protein homolog [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011057	Mss4-like_sf
IPR011323	Mss4/transl-control_tumour
IPR018105	Translational_control_tumour_p

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0008017	microtubule binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G016170.1	CmaCh14G016170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011057	Mss4-like	unknown	SSF51316	Mss4-like	coord: 35..72 score: 8.37
IPR011323	Mss4/translationally controlled tumour-associated TCTP	GENE3D	G3DSA:2.170.150.10		coord: 35..72 score: 2.
IPR018105	Translationally controlled tumour protein	PFAM	PF00838	TCTP	coord: 35..68 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G016170	Cucsa.253020	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G016170	Cla021747	Watermelon (97103) v1	cmawmB242
CmaCh14G016170	Csa3G154390	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G016170	MELO3C006670	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G016170	ClCG05G006160	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G016170	CSPI03G14490	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G016170	CmoCh06G015020	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G016170	CmoCh14G016540	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G016170	Cp4.1LG08g04970	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G016170	Cp4.1LG03g11490	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G016170	MELO3C006670.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G016170	CsaV3_3G014730	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G016170	Cla97C05G087680	Watermelon (97103) v2	cmawmbB263
CmaCh14G016170	Bhi01G000726	Wax gourd	cmawgoB0328
CmaCh14G016170	CsGy3G014630	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G016170	Carg20104	Silver-seed gourd	carcmaB1153
CmaCh14G016170	Carg17338	Silver-seed gourd	carcmaB0847

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G016170	CmaCh00G004010	Cucurbita maxima (Rimu)	cmacmaB010
CmaCh14G016170	CmaCh06G015040	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G016170	Silver-seed gourd	carcmaB0090
CmaCh14G016170	Silver-seed gourd	carcmaB0984
CmaCh14G016170	Watermelon (97103) v2	cmawmbB266
CmaCh14G016170	Wax gourd	cmawgoB0309
CmaCh14G016170	Cucurbita maxima (Rimu)	cmacmaB013
CmaCh14G016170	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G016170	Cucurbita maxima (Rimu)	cmacmaB298
CmaCh14G016170	Cucurbita moschata (Rifu)	cmacmoB251
CmaCh14G016170	Cucurbita moschata (Rifu)	cmacmoB279
CmaCh14G016170	Melon (DHL92) v3.5.1	cmameB215
CmaCh14G016170	Watermelon (Charleston Gray)	cmawcgB236
CmaCh14G016170	Watermelon (97103) v1	cmawmB250
CmaCh14G016170	Cucurbita pepo (Zucchini)	cmacpeB262
CmaCh14G016170	Cucurbita pepo (Zucchini)	cmacpeB270
CmaCh14G016170	Bottle gourd (USVL1VR-Ls)	cmalsiB225
CmaCh14G016170	Bottle gourd (USVL1VR-Ls)	cmalsiB250