Carg17338-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17338-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Translationally-controlled tumor protein homolog
Location	Cucurbita_argyrosperma_scaffold_092 : 91617 .. 92786 (+)
Sequence length	543

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGTGTACATGGATTCGTTCCCTTCATTGGTGACAAAGCAATTGTTTTTAATTTTGATATCAGGTGACGAGCTTCTCTCGGATTCGTTCCCATACAAGGAACTCGAGAATGGAATGATCTGGGAAGTTGAGGGAAAGGTCAGTAGACTTTGTTTATTGTATGCTTTTTCACTTTTTCATGGAAAGAAAACGTCGTGTCTTAATGCTACCGAGTATATAGTTACTGAAACTAAGTGTTAGCCTAACTGAATGAGTATTCAGCACAATACTTTACTACTTGAATCATTATGCTGCAGTGGGTCGTTCAAGGAGCGGTCGATGTGGACATTGGTGCAAATCCTTCTGCTGAAGGTGACGGTGAGGATGAAGGGGTTGATGACCAAGCTGTGAAGGTGGTTGACATTGTCGACACCTTCAGGCTTCAGGTAGGCATGCCTTCTGGTTAAGACATTCAAGGATTGTTGCAAGTTTTTAATTTTAGGGCATACTTGGGAGTGATTTTATTCAAATCACTGCTATTAAATGTTTCCCATACTTGACCTAAATCTATTTTTCTTTCCACTTTGGGATTCCAGGAGCAACCTACCATGGACAAGAAGCAGTTCATTGCATACATTAAGAAGTTTATCAAATTGCTGACACCTAAGCTGGAAGGAGAGAAACAGGAGGCATTTAAGAAGAACATTGAAGGAGCAACTAAGTTTCTGCTTCCAAAGCTCAAGGACTTCCAGTTGTAAGTACTTCCCTTTGTTTAGGCTATCTTTTATTGGCATTACATCTTTAGTAATAGAAATATTTGAACTCAACACAGCAAACCAAATCTTACCATTTGTGATAATTTACGTTCTTTGTATTTTAACATTGCTCTTGAACACCCTTTTTTTGAATCAATATGTGATGGATGGATGAAACCGGAGCGTTCGAGCTTTTAGTGCTTCTCCTAAAAGCAGCACTTACAGAACCTAGTGTTTTTAGAATTTTCAATATTCTCGAAGTTTTAAGTTTTCTTATCATTAGAATGATTCCTAATTGTATTATATGTTCTTTTGCAGCTTCGTGGGAGAGAGCATGCATGACGATTCCTGCATCGTGTTTGCATACTACAGGGAAGGAGCCACTGACCCAACATTTTTATACCTTGCCCCAGCTTTGAAGGAAGTCAAGTGCTGA

mRNA sequence

TTGGTGTACATGGATTCGTTCCCTTCATTGGTGACAAAGCAATTGTTTTTAATTTTGATATCAGGTGACGAGCTTCTCTCGGATTCGTTCCCATACAAGGAACTCGAGAATGGAATGATCTGGGAAGTTGAGGGAAAGTGGGTCGTTCAAGGAGCGGTCGATGTGGACATTGGTGCAAATCCTTCTGCTGAAGGTGACGGTGAGGATGAAGGGGTTGATGACCAAGCTGTGAAGGTGGTTGACATTGTCGACACCTTCAGGCTTCAGGAGCAACCTACCATGGACAAGAAGCAGTTCATTGCATACATTAAGAAGTTTATCAAATTGCTGACACCTAAGCTGGAAGGAGAGAAACAGGAGGCATTTAAGAAGAACATTGAAGGAGCAACTAAGTTTCTGCTTCCAAAGCTCAAGGACTTCCAGTTCTTCGTGGGAGAGAGCATGCATGACGATTCCTGCATCGTGTTTGCATACTACAGGGAAGGAGCCACTGACCCAACATTTTTATACCTTGCCCCAGCTTTGAAGGAAGTCAAGTGCTGA

Coding sequence (CDS)

TTGGTGTACATGGATTCGTTCCCTTCATTGGTGACAAAGCAATTGTTTTTAATTTTGATATCAGGTGACGAGCTTCTCTCGGATTCGTTCCCATACAAGGAACTCGAGAATGGAATGATCTGGGAAGTTGAGGGAAAGTGGGTCGTTCAAGGAGCGGTCGATGTGGACATTGGTGCAAATCCTTCTGCTGAAGGTGACGGTGAGGATGAAGGGGTTGATGACCAAGCTGTGAAGGTGGTTGACATTGTCGACACCTTCAGGCTTCAGGAGCAACCTACCATGGACAAGAAGCAGTTCATTGCATACATTAAGAAGTTTATCAAATTGCTGACACCTAAGCTGGAAGGAGAGAAACAGGAGGCATTTAAGAAGAACATTGAAGGAGCAACTAAGTTTCTGCTTCCAAAGCTCAAGGACTTCCAGTTCTTCGTGGGAGAGAGCATGCATGACGATTCCTGCATCGTGTTTGCATACTACAGGGAAGGAGCCACTGACCCAACATTTTTATACCTTGCCCCAGCTTTGAAGGAAGTCAAGTGCTGA

Protein sequence

LVYMDSFPSLVTKQLFLILISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC

Homology

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BLAST of Carg17338-RA vs. NCBI nr
Match: XP_022937958.1 (translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_022973732.1 translationally-controlled tumor protein homolog [Cucurbita maxima] >XP_022975167.1 translationally-controlled tumor protein homolog [Cucurbita maxima] >XP_023539947.1 translationally-controlled tumor protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.2 bits (835), Expect = 6.8e-86
Identity = 160/162 (98.77%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC
Sbjct: 127 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

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BLAST of Carg17338-RA vs. NCBI nr
Match: Q2PS27.1 (RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP; AltName: Full=CmTCTP >ABC02401.1 translationally controlled tumor protein [Cucurbita maxima])

HSP 1 Score: 324.7 bits (831), Expect = 2.0e-85
Identity = 159/162 (98.15%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DF+FFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC
Sbjct: 127 DFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

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BLAST of Carg17338-RA vs. NCBI nr
Match: XP_022956345.1 (translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_023526154.1 translationally-controlled tumor protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 6.8e-78
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L+SGDELLSDSFPYKE+ENGMIWEV+GKWVVQGAVDVDIGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAVDVDIGANPSAEGAGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP +DKK FIAYIKK+IKL+TPKLEGEKQEAFKKNIEGATK+LL KLK
Sbjct: 67  VVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLVTPKLEGEKQEAFKKNIEGATKYLLAKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDDS +VFAYY+EGATDPTFLYLAP LKEVKC
Sbjct: 127 DLQFFVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKEVKC 168

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BLAST of Carg17338-RA vs. NCBI nr
Match: PIA44396.1 (hypothetical protein AQUCO_01700176v1 [Aquilegia coerulea])

HSP 1 Score: 289.3 bits (739), Expect = 9.2e-75
Identity = 140/162 (86.42%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+A+IK+FIK LTPKLEGE QE FKK IEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVAFIKRFIKQLTPKLEGEAQEQFKKGIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESMHDDS +V AYY+EGATDPTFLY A  LKEVKC
Sbjct: 127 DFQFFVGESMHDDSGLVLAYYKEGATDPTFLYFAHGLKEVKC 168

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BLAST of Carg17338-RA vs. NCBI nr
Match: XP_016720885.1 (PREDICTED: translationally-controlled tumor protein homolog [Gossypium hirsutum] >XP_017642651.1 PREDICTED: translationally-controlled tumor protein homolog [Gossypium arboreum] >KHG20862.1 Translationally-controlled tumor [Gossypium arboreum] >PPS02243.1 hypothetical protein GOBAR_AA18416 [Gossypium barbadense])

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 140/162 (86.42%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           LISGDELLSDSFPYKE+ENGM+WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LISGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ +IKKFIK LTPKL+ EKQE+FKKNIEGATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPPFDKKQFVVFIKKFIKNLTPKLDAEKQESFKKNIEGATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD C+VFAYY++GA DPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGCLVFAYYKDGAVDPTFLYFAYALKEVKC 168

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BLAST of Carg17338-RA vs. TAIR10
Match: AT3G16640.1 (translationally controlled tumor protein)

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-71
Identity = 129/162 (79.63%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE+ENG++WEVEGKWV  GAVDV+IGANPSAE  GEDEGVDD   K
Sbjct: 7   LLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQPT DKK FIAYIKK+IKLLTPKL  E Q  FKK IEGATKFLLP+L 
Sbjct: 67  VVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLS 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGE MHDDS +VFAYY+EG+T+PTFLY A  LKEVKC
Sbjct: 127 DFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168

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BLAST of Carg17338-RA vs. TAIR10
Match: AT3G05540.1 (Methionine sulfoxide reductase (MSS4-like) family protein)

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-68
Identity = 123/163 (75.46%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           +++GDELLSDSFPYKE+ENGM+WEVEGKWVV+GA+D DIGANP  EG GEDEGVDDQAVK
Sbjct: 7   ILTGDELLSDSFPYKEIENGMLWEVEGKWVVKGAMDFDIGANPGEEG-GEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDI+DTFRLQEQP+ DKKQF+ ++K++IK L+PKL+ E QE FKK+IE ATKFL+ KLK
Sbjct: 67  VVDIIDTFRLQEQPSFDKKQFVMFMKRYIKQLSPKLDSENQELFKKHIESATKFLMSKLK 126

Query: 139 DFQFFVGESMH-DDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESM  ++  +VFAYYREGATDPTFLYLA  LKE+KC
Sbjct: 127 DFQFFVGESMEGEEGSLVFAYYREGATDPTFLYLAYGLKEIKC 168

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BLAST of Carg17338-RA vs. Swiss-Prot
Match: sp|Q2PS27|TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima OX=3661 GN=TCTP PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 6.5e-88
Identity = 159/162 (98.15%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DF+FFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC
Sbjct: 127 DFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

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BLAST of Carg17338-RA vs. Swiss-Prot
Match: sp|P43349|TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN=TCTP PE=2 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 2.5e-76
Identity = 135/162 (83.33%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE++NGM+WEV+GKWVVQGAVDV+IGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ YIK++IK LTPKLEGE QEAFKKNIE ATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGE MHDDS +VFAYY++G+ DPTFLYLAP LKE+KC
Sbjct: 127 DFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168

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BLAST of Carg17338-RA vs. Swiss-Prot
Match: sp|Q9M5I8|TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo OX=3656 GN=TCTP PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.3e-75
Identity = 136/162 (83.95%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L+SGDELLSDSFPYKE+ENGMIWEVEGKWVV+GAVDVDIGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LVSGDELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP+MDKK F++ IKK+IK LTP L+GE+QEAFK  IEGA K+LLPK+K
Sbjct: 67  VVDIVDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESM DDS +VFAYY+EGATDPTFLY+AP LKEVKC
Sbjct: 127 DLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168

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BLAST of Carg17338-RA vs. Swiss-Prot
Match: sp|Q9ZSW9|TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 GN=TCTP PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.4e-74
Identity = 136/162 (83.95%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE+ NG++WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ Y+K+FIKLLTPKL+ EKQE+FKKNIEGATKFLL KL 
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLS 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD  +VFAYYR GATDPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168

[Close]

BLAST of Carg17338-RA vs. Swiss-Prot
Match: sp|Q9M5G3|TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare OX=4513 GN=TCTP PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 3.4e-73
Identity = 133/161 (82.61%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 20  ISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKV 79
           +SGDELLSDSFPY+ELENG++WEV+G WVVQGAVDVDIGANPSAEG GEDEGVDDQAVKV
Sbjct: 8   LSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKV 67

Query: 80  VDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKD 139
           VDIVDTFRLQEQP  DKKQFIAYIK++IK LT KLEGE+ +AFKKN+E ATK+LL KLKD
Sbjct: 68  VDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKD 127

Query: 140 FQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
            QFFVGESMHDD  +VFAYYREGA DPTFLY A  LKEVKC
Sbjct: 128 LQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168

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BLAST of Carg17338-RA vs. TrEMBL
Match: tr|A0A2G5DLN3|A0A2G5DLN3_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01700176v1 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.1e-75
Identity = 140/162 (86.42%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+A+IK+FIK LTPKLEGE QE FKK IEGATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVAFIKRFIKQLTPKLEGEAQEQFKKGIEGATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESMHDDS +V AYY+EGATDPTFLY A  LKEVKC
Sbjct: 127 DFQFFVGESMHDDSGLVLAYYKEGATDPTFLYFAHGLKEVKC 168

[Close]

BLAST of Carg17338-RA vs. TrEMBL
Match: tr|A0A0B0P7K2|A0A0B0P7K2_GOSAR (Translationally-controlled tumor OS=Gossypium arboreum OX=29729 GN=F383_02604 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-74
Identity = 140/162 (86.42%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           LISGDELLSDSFPYKE+ENGM+WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LISGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ +IKKFIK LTPKL+ EKQE+FKKNIEGATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPPFDKKQFVVFIKKFIKNLTPKLDAEKQESFKKNIEGATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD C+VFAYY++GA DPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGCLVFAYYKDGAVDPTFLYFAYALKEVKC 168

[Close]

BLAST of Carg17338-RA vs. TrEMBL
Match: tr|A0A1U8M265|A0A1U8M265_GOSHI (translationally-controlled tumor protein homolog OS=Gossypium hirsutum OX=3635 GN=LOC107933238 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-74
Identity = 140/162 (86.42%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           LISGDELLSDSFPYKE+ENGM+WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LISGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ +IKKFIK LTPKL+ EKQE+FKKNIEGATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPPFDKKQFVVFIKKFIKNLTPKLDAEKQESFKKNIEGATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD C+VFAYY++GA DPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGCLVFAYYKDGAVDPTFLYFAYALKEVKC 168

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BLAST of Carg17338-RA vs. TrEMBL
Match: tr|A0A2P5XFX8|A0A2P5XFX8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA18416 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-74
Identity = 140/162 (86.42%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           LISGDELLSDSFPYKE+ENGM+WEVEGKWVVQGAVDVDIGANPSAEG  EDEGVDDQAVK
Sbjct: 7   LISGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ +IKKFIK LTPKL+ EKQE+FKKNIEGATKFLL KLK
Sbjct: 67  VVDIVDTFRLQEQPPFDKKQFVVFIKKFIKNLTPKLDAEKQESFKKNIEGATKFLLSKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           D QFFVGESMHDD C+VFAYY++GA DPTFLY A ALKEVKC
Sbjct: 127 DLQFFVGESMHDDGCLVFAYYKDGAVDPTFLYFAYALKEVKC 168

[Close]

BLAST of Carg17338-RA vs. TrEMBL
Match: tr|Q3HVK2|Q3HVK2_SOLTU (p23 tumor protein-like protein OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.9e-74
Identity = 136/162 (83.95%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 19  LISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVK 78
           L++GDELLSDSFPYKELENGM+WEV+GKWVVQGAVDV+IGANPSAEG GEDEGVDDQAVK
Sbjct: 7   LLTGDELLSDSFPYKELENGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVK 66

Query: 79  VVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLK 138
           VVDIVDTFRLQEQP  DKKQF+ YIK++IK LTPKLEGE Q+AFKKNIE ATKFLLPKLK
Sbjct: 67  VVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQDAFKKNIESATKFLLPKLK 126

Query: 139 DFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 181
           DFQFFVGESM DDS +VFA+Y++G+ DPTFLYLAP LKE+KC
Sbjct: 127 DFQFFVGESMSDDSALVFAFYKDGSADPTFLYLAPGLKEIKC 168

The following BLAST results are available for this feature:

BLAST of Carg17338-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937958.1	6.8e-86	98.77	translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_022973...	[more]
Q2PS27.1	2.0e-85	98.15	RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP; AltN...	[more]
XP_022956345.1	6.8e-78	90.12	translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_023526...	[more]
PIA44396.1	9.2e-75	86.42	hypothetical protein AQUCO_01700176v1 [Aquilegia coerulea]	[more]
XP_016720885.1	1.6e-74	86.42	PREDICTED: translationally-controlled tumor protein homolog [Gossypium hirsutum]...	[more]

BLAST of Carg17338-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16640.1	2.0e-71	79.63	translationally controlled tumor protein	[more]
AT3G05540.1	1.6e-68	75.46	Methionine sulfoxide reductase (MSS4-like) family protein	[more]

BLAST of Carg17338-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2PS27\|TCTP_CUCMA	6.5e-88	98.15	Translationally-controlled tumor protein homolog OS=Cucurbita maxima OX=3661 GN=...	[more]
sp\|P43349\|TCTP_SOLTU	2.5e-76	83.33	Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN...	[more]
sp\|Q9M5I8\|TCTP_CUCME	6.3e-75	83.95	Translationally-controlled tumor protein homolog OS=Cucumis melo OX=3656 GN=TCTP...	[more]
sp\|Q9ZSW9\|TCTP_HEVBR	1.4e-74	83.95	Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 G...	[more]
sp\|Q9M5G3\|TCTP_HORVU	3.4e-73	82.61	Translationally-controlled tumor protein homolog OS=Hordeum vulgare OX=4513 GN=T...	[more]

BLAST of Carg17338-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G5DLN3\|A0A2G5DLN3_AQUCA	6.1e-75	86.42	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01700176v1 PE=3...	[more]
tr\|A0A0B0P7K2\|A0A0B0P7K2_GOSAR	1.0e-74	86.42	Translationally-controlled tumor OS=Gossypium arboreum OX=29729 GN=F383_02604 PE...	[more]
tr\|A0A1U8M265\|A0A1U8M265_GOSHI	1.0e-74	86.42	translationally-controlled tumor protein homolog OS=Gossypium hirsutum OX=3635 G...	[more]
tr\|A0A2P5XFX8\|A0A2P5XFX8_GOSBA	1.0e-74	86.42	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA18416 PE=3 SV...	[more]
tr\|Q3HVK2\|Q3HVK2_SOLTU	3.9e-74	83.95	p23 tumor protein-like protein OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011057	Mss4-like_sf
IPR034737	TCTP
IPR018103	Translation_control_tumour_CS
IPR011323	Mss4/transl-control_tumour
IPR018105	Translational_control_tumour_p

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17338	Carg17338	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17338-RA	Carg17338-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17338-RA.exon.1	Carg17338-RA.exon.1	exon
Carg17338-RA.exon.2	Carg17338-RA.exon.2	exon
Carg17338-RA.exon.3	Carg17338-RA.exon.3	exon
Carg17338-RA.exon.4	Carg17338-RA.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17338-RA.CDS.1	Carg17338-RA.CDS.1	CDS
Carg17338-RA.CDS.2	Carg17338-RA.CDS.2	CDS
Carg17338-RA.CDS.3	Carg17338-RA.CDS.3	CDS
Carg17338-RA.CDS.4	Carg17338-RA.CDS.4	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018105	Translationally controlled tumour protein	PRINTS	PR01653	TCTPROTEIN	coord: 13..33 score: 46.6 coord: 72..91 score: 60.36 coord: 58..69 score: 65.48
IPR018105	Translationally controlled tumour protein	PFAM	PF00838	TCTP	coord: 18..176 e-value: 3.3E-50 score: 170.5
IPR018105	Translationally controlled tumour protein	PANTHER	PTHR11991	TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED	coord: 19..180
IPR011323	Mss4/translationally controlled tumour-associated TCTP	GENE3D	G3DSA:2.170.150.10		coord: 14..180 e-value: 2.8E-52 score: 179.2
None	No IPR available	PANTHER	PTHR11991:SF0	TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN	coord: 19..180
IPR018103	Translationally controlled tumour protein, conserved site	PROSITE	PS01003	TCTP_2	coord: 137..159
IPR034737	Translationally controlled tumour protein (TCTP) domain	PROSITE	PS51797	TCTP_3	coord: 9..180 score: 53.826
IPR011057	Mss4-like superfamily	SUPERFAMILY	SSF51316	Mss4-like	coord: 19..180