Carg13053 (gene) Silver-seed gourd

Overview
NameCarg13053
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionArabinogalactan peptide
LocationCucurbita_argyrosperma_scaffold_101 : 41978 .. 43646 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGCTAACCCTATAAAAGGGCACACCCTGGGAAGTTTGTATCCCCTCGTTTGCCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGTTAGTTCTCTTTCTTTTATGTTTTATTTTGCATTTCTGTTCCAGATCTGTGTGCAATTCTTTGATCTCTGACCTTTGTTTATTCTTTGATTTCGGTAGAATATTTTGGCGTTATTTTTTAGGTTCGGTTTTTGAGTTAATTGGAATTTTGAAAATTTCGTTTCAAATCTTAACTTATGTCACTTTTTTGTCCCTTCAATTTATTGTGTATCCCTTCAATTTTTTGTGTGTTCAATCAAGCTTTTGGTGGATCCATTTTTGGTACACGTACCATCAATTTTAGTTATCCGCGGGCCAATTTGAGAAATTTAAAAAGAAAAAAAAAACCTATTTTCATGTAACCATAAAAATGGAAAAAGTTTCTTAATAGTTTCAATAATTAATAAACATCCCATTCCGAAGTGAAATTAAACCAATTGTCATTATCAGACTAAATATATGGTTTTACTTCTTTTTTCTGCACTTTCTAAATTTATCAAGAAATTTAGCTGCATTGCTCCTTGATTAATTAAATCACACGAGCCTTACATTACAATGTTTTCTACTCAATTACTAGGAGCGGTTTGGGCATTGGCTTGGATTGGGTTCTAAATCCATATCCATGTTTGGTTGAAATAACAAACTCTCTTAAAATCTATGGATACCCCTCGAAATCTATGGTCTCCGTTGAAATTACAATAATTGAGGGTCCACCACTTTTGTTTCCATTTTCTCACAATTATGGTGGTTCCTACCATTTTTGCTTGGGTCTCGTCATTTGTTTAATTAAAATGCAGGGTTATATTATCTTAGTTCAAAATATGGTTAATGTTGAAAAATGAAAAGATCAGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAACTTCTAGAAGCATAATATAGTATTTGGGAGTTTAGTTAGAAGTGGCAATGGGTTCTTCTCTTGCTGCATCCTTTCCTGTTTCTGTTTTATTTATTTATGAGATCATCATCATCATCATCCTCACACATTTCTTCTATGTACATTCTCCTCATTTTTAAATGACATTTATTGGCTTTCCCTTTTTCCCCCTTTCTTCTCCCCTTCAATTTTGTACCCAAATAACATAAAAAATATTCTCTTCTTAATGTTACTAATATATTT

mRNA sequence

AAAAGCTAACCCTATAAAAGGGCACACCCTGGGAAGTTTGTATCCCCTCGTTTGCCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAACTTCTAGAAGCATAATATAGTATTTGGGAGTTTAGTTAGAAGTGGCAATGGGTTCTTCTCTTGCTGCATCCTTTCCTGTTTCTGTTTTATTTATTTATGAGATCATCATCATCATCATCCTCACACATTTCTTCTATGTACATTCTCCTCATTTTTAAATGACATTTATTGGCTTTCCCTTTTTCCCCCTTTCTTCTCCCCTTCAATTTTGTACCCAAATAACATAAAAAATATTCTCTTCTTAATGTTACTAATATATTT

Coding sequence (CDS)

ATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAACTTCTAG

Protein sequence

MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
Homology
[Close]
BLAST of Carg13053 vs. NCBI nr
Match: XP_022941572.1 (arabinogalactan peptide 22-like [Cucurbita moschata])

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-29
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY
Sbjct: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60

Query: 61 LIHSADLASSSSSNF 76
          LIHSADL SSSSSNF
Sbjct: 61 LIHSADLVSSSSSNF 75

[Close]
BLAST of Carg13053 vs. NCBI nr
Match: XP_023522233.1 (arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 9.2e-29
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY
Sbjct: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60

Query: 61 LIHSADLASSSSSNF 76
          LIHSADLASSSSS+F
Sbjct: 61 LIHSADLASSSSSSF 75

[Close]
BLAST of Carg13053 vs. NCBI nr
Match: XP_022985432.1 (arabinogalactan peptide 20 [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHSADLASS 71
          LIH+ADL+SS
Sbjct: 61 LIHNADLSSS 70

[Close]
BLAST of Carg13053 vs. NCBI nr
Match: XP_022931316.1 (arabinogalactan peptide 22-like [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-23
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHSADLASS 71
          LIH+ADL++S
Sbjct: 61 LIHNADLSNS 70

[Close]
BLAST of Carg13053 vs. NCBI nr
Match: XP_022136454.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSRASFGFVAAAAL+F IFLPVA P SL PAPAP+SDGTSIDQGIAY+LM VALALTY
Sbjct: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHSADLASS 71
          LIH+ADL++S
Sbjct: 61 LIHNADLSNS 70

[Close]
BLAST of Carg13053 vs. TAIR10
Match: AT3G61640.1 (arabinogalactan protein 20)

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-16
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 4  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH 63
          SR S   +A  A VF +  P A  QSLAPAP+PTSDGTSIDQGIAY+LM VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 SADLASSSSSNF 76
            D +SSS + F
Sbjct: 63 PLDASSSSYTFF 74

[Close]
BLAST of Carg13053 vs. TAIR10
Match: AT5G24105.1 (arabinogalactan protein 41)

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-15
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          M+ SR  FG     +++F I LP+A  QS APAPAPTSDGT+IDQGIAY+LM VAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]
BLAST of Carg13053 vs. TAIR10
Match: AT2G46330.1 (arabinogalactan protein 16)

HSP 1 Score: 76.6 bits (187), Expect = 7.1e-15
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 4  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH 63
          SR S    A  + VF + L +A  QSLAPAPAPTSDGTSIDQGIAY+LM VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 SADLASSSS 73
            D +SS S
Sbjct: 63 PLDASSSYS 71

[Close]
BLAST of Carg13053 vs. TAIR10
Match: AT5G53250.1 (arabinogalactan protein 22)

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MA  +     +A   ++  I LP+AQ           SDGTSIDQGIAY+LM VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQXXXXXXXXXXXSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

[Close]
BLAST of Carg13053 vs. Swiss-Prot
Match: sp|Q9M373|AGP20_ARATH (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.2e-15
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 4  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH 63
          SR S   +A  A VF +  P A  QSLAPAP+PTSDGTSIDQGIAY+LM VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 SADLASSSSSNF 76
            D +SSS + F
Sbjct: 63 PLDASSSSYTFF 74

[Close]
BLAST of Carg13053 vs. Swiss-Prot
Match: sp|Q8L9T8|AGP41_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-14
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          M+ SR  FG     +++F I LP+A  QS APAPAPTSDGT+IDQGIAY+LM VAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]
BLAST of Carg13053 vs. Swiss-Prot
Match: sp|O82337|AGP16_ARATH (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-13
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 4  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH 63
          SR S    A  + VF + L +A  QSLAPAPAPTSDGTSIDQGIAY+LM VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 SADLASSSS 73
            D +SS S
Sbjct: 63 PLDASSSYS 71

[Close]
BLAST of Carg13053 vs. Swiss-Prot
Match: sp|Q9FK16|AGP22_ARATH (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MA  +     +A   ++  I LP+AQ           SDGTSIDQGIAY+LM VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQXXXXXXXXXXXSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

[Close]
BLAST of Carg13053 vs. TrEMBL
Match: tr|A0A0A0KZS8|A0A0A0KZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051380 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSR+SFG +AA AL+F IFLPVA P SLAPAPAPTSDGTSIDQGIAY+LM VALALTY
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHSADL 68
          LIH+ADL
Sbjct: 61 LIHNADL 67

[Close]
BLAST of Carg13053 vs. TrEMBL
Match: tr|A0A1S3BS55|A0A1S3BS55_CUCME (arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103493115 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSR+SF  +AA AL+F IFLPVA P SLAPAPAPTSDGTSIDQGIAY+LM VALALTY
Sbjct: 1  MAVSRSSFELLAATALIFAIFLPVAHPLSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHSADLASS 71
          LIH+ADL+++
Sbjct: 61 LIHNADLSNN 70

[Close]
BLAST of Carg13053 vs. TrEMBL
Match: tr|A0A2P4N2B7|A0A2P4N2B7_QUESU (Arabinogalactan peptide 20 OS=Quercus suber OX=58331 GN=CFP56_23693 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-17
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAV+R S G VA   L+F IFLP   PQ+LAPAPAPTSDGTSIDQGIAY+LM VAL LTY
Sbjct: 1  MAVTRISLGVVAVLVLLFAIFLPSVHPQNLAPAPAPTSDGTSIDQGIAYVLMAVALVLTY 60

Query: 61 LIHSADLA 69
          LIHSAD++
Sbjct: 61 LIHSADMS 68

[Close]
BLAST of Carg13053 vs. TrEMBL
Match: tr|A0A1U8AFS3|A0A1U8AFS3_NELNU (arabinogalactan peptide 20-like OS=Nelumbo nucifera OX=4432 GN=LOC104603947 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSR SFG VA  AL+F + LP  Q QS+APAPAPTSDGTSIDQGIAY+LM VAL LTY
Sbjct: 1  MAVSRVSFGVVAIVALIFAVALPAVQAQSVAPAPAPTSDGTSIDQGIAYVLMLVALVLTY 60

Query: 61 LIHSADLASSSSSNF 76
          LIH  D   +SS NF
Sbjct: 61 LIHPLD---ASSYNF 72

[Close]
BLAST of Carg13053 vs. TrEMBL
Match: tr|A0A1U8A8P5|A0A1U8A8P5_NELNU (arabinogalactan peptide 20-like OS=Nelumbo nucifera OX=4432 GN=LOC104600308 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-16
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60
          MAVSR SFG +A  AL+F+I  P  Q QSLAPAPAPTSDGTSIDQG+AY+LM VAL LTY
Sbjct: 1  MAVSRVSFGVMAIVALIFSIAFPAVQAQSLAPAPAPTSDGTSIDQGVAYVLMLVALVLTY 60

Query: 61 LIHSADLAS 70
          LIH  D +S
Sbjct: 61 LIHPLDASS 69

The following BLAST results are available for this feature:
BLAST of Carg13053 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941572.17.1e-2998.67arabinogalactan peptide 22-like [Cucurbita moschata][more]
XP_023522233.19.2e-2998.67arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo][more]
XP_022985432.11.2e-2390.00arabinogalactan peptide 20 [Cucurbita maxima][more]
XP_022931316.12.6e-2388.57arabinogalactan peptide 22-like [Cucurbita moschata][more]
XP_022136454.11.4e-2184.29arabinogalactan peptide 22-like [Momordica charantia][more]
BLAST of Carg13053 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61640.12.9e-1663.89arabinogalactan protein 20[more]
AT5G24105.12.4e-1565.08arabinogalactan protein 41[more]
AT2G46330.17.1e-1565.22arabinogalactan protein 16[more]
AT5G53250.11.1e-0749.21arabinogalactan protein 22[more]
BLAST of Carg13053 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M373|AGP20_ARATH5.2e-1563.89Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1[more]
sp|Q8L9T8|AGP41_ARATH4.4e-1465.08Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1[more]
sp|O82337|AGP16_ARATH1.3e-1365.22Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1[more]
sp|Q9FK16|AGP22_ARATH2.0e-0649.21Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1[more]
BLAST of Carg13053 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZS8|A0A0A0KZS8_CUCSA1.8e-2083.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051380 PE=4 SV=1[more]
tr|A0A1S3BS55|A0A1S3BS55_CUCME1.5e-1978.57arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103493115 PE=4 SV=... [more]
tr|A0A2P4N2B7|A0A2P4N2B7_QUESU3.1e-1773.53Arabinogalactan peptide 20 OS=Quercus suber OX=58331 GN=CFP56_23693 PE=4 SV=1[more]
tr|A0A1U8AFS3|A0A1U8AFS3_NELNU2.0e-1670.67arabinogalactan peptide 20-like OS=Nelumbo nucifera OX=4432 GN=LOC104603947 PE=4... [more]
tr|A0A1U8A8P5|A0A1U8A8P5_NELNU4.5e-1671.01arabinogalactan peptide 20-like OS=Nelumbo nucifera OX=4432 GN=LOC104600308 PE=4... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13053-RACarg13053-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan protein 16/20/22/41PFAMPF06376AGPcoord: 31..63
e-value: 5.4E-17
score: 61.2
IPR009424Arabinogalactan protein 16/20/22/41PANTHERPTHR33374FAMILY NOT NAMEDcoord: 1..71
NoneNo IPR availablePANTHERPTHR33374:SF9SUBFAMILY NOT NAMEDcoord: 1..71

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13053Cla010927Watermelon (97103) v1carwmB0045
Carg13053Cla011387Watermelon (97103) v1carwmB0049
Carg13053Csa5G151510Cucumber (Chinese Long) v2carcuB0048
Carg13053Csa4G051380Cucumber (Chinese Long) v2carcuB0044
Carg13053ClCG07G014860Watermelon (Charleston Gray)carwcgB0047
Carg13053ClCG01G002070Watermelon (Charleston Gray)carwcgB0044
Carg13053CSPI05G04790Wild cucumber (PI 183967)carcpiB0052
Carg13053CSPI04G06190Wild cucumber (PI 183967)carcpiB0048
Carg13053Cucsa.107210Cucumber (Gy14) v1carcgyB0049
Carg13053CmaCh15G012660Cucurbita maxima (Rimu)carcmaB0051
Carg13053CmaCh04G007060Cucurbita maxima (Rimu)carcmaB0055
Carg13053CmaCh16G005600Cucurbita maxima (Rimu)carcmaB0054
Carg13053CmoCh16G006090Cucurbita moschata (Rifu)carcmoB0056
Carg13053CmoCh15G013360Cucurbita moschata (Rifu)carcmoB0053
Carg13053CmoCh04G007510Cucurbita moschata (Rifu)carcmoB0058
Carg13053Lsi07G006990Bottle gourd (USVL1VR-Ls)carlsiB040
Carg13053Lsi09G001900Bottle gourd (USVL1VR-Ls)carlsiB038
Carg13053Cp4.1LG14g02440Cucurbita pepo (Zucchini)carcpeB0058
Carg13053Cp4.1LG13g01080Cucurbita pepo (Zucchini)carcpeB0056
Carg13053Cp4.1LG01g00370Cucurbita pepo (Zucchini)carcpeB0061
Carg13053CsGy4G006110Cucumber (Gy14) v2carcgybB0044
Carg13053CsGy5G002090Cucumber (Gy14) v2carcgybB0048
Carg13053MELO3C032818.2Melon (DHL92) v3.6.1carmedB0046
Carg13053MELO3C034006.2Melon (DHL92) v3.6.1carmedB0041
Carg13053CsaV3_5G002200Cucumber (Chinese Long) v3carcucB0053
Carg13053CsaV3_4G006390Cucumber (Chinese Long) v3carcucB0049
Carg13053Cla97C07G141780Watermelon (97103) v2carwmbB0044
Carg13053Bhi01G002276Wax gourdcarwgoB0049
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg13053Carg21266Silver-seed gourdcarcarB048
Carg13053Carg22236Silver-seed gourdcarcarB049
The following block(s) are covering this gene:
GeneOrganismBlock
Carg13053Cucumber (Gy14) v1carcgyB0056
Carg13053Melon (DHL92) v3.5.1carmeB0040
Carg13053Melon (DHL92) v3.5.1carmeB0045
Carg13053Watermelon (97103) v2carwmbB0041
Carg13053Wax gourdcarwgoB0048