CmaCh15G012660 (gene) Cucurbita maxima (Rimu)

NameCmaCh15G012660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionArabinogalactan peptide 16
LocationCma_Chr15 : 8049045 .. 8049840 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATAGACCATTTCAAACAAACCCCCCAAAAAAGAAACTTTGAAACCAGAGATTCACACGCCATTGCAGTTGCAACGTTAAGGCCTGGAGACCAAATGGGCGCTATAAAATCCAGAGCCTCATTTGATTGAGAGCCACACCGCCATTGCCACGCCGTCGTCGCTGTCTCCGGAACTGTCAACTGGCCGGTGGCCCTCAACCACCCCTCCCTTTTGACAGCTTCAAATCATCAACTCGGCCTATTTAATCTCTCTCTGCTGCGGCTCTCCGGAGCCCCTGCAGGAGGTTTCGTCTCAACTTCTTACATTTCTGAGAGACGTTGCAGAGAGAGATTTCGTTCTTCCATTTCAAATTATCTTGTTTTTTCACCTAGAAGCTTCTTCTTCCTTTAACAATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTTTTATTTGGTGTTGTTTTTGTTTTGGCTATGCTTCTCCCTGCTTCTGCTCAATCTCTGGCTCCGGCCCAACCTCCTGCTGCTAGCGATGGTTAGTTCTTCTTCTTCTTCTTCCTCATTTGAATCATGGTTTTCAAGTTCTCCACCTATGAATTTCATAAATGATGACAATTATTGTTATGCTAATTTGCAGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCTAAATTTCATCCACAAAATAACTAGATTCAGATATCACAGAGCTGGAATTTAAAAATGGGGTTCAAGAATTTATCACTTTT

mRNA sequence

CCATAGACCATTTCAAACAAACCCCCCAAAAAAGAAACTTTGAAACCAGAGATTCACACGCCATTGCAGTTGCAACGTTAAGGCCTGGAGACCAAATGGGCGCTATAAAATCCAGAGCCTCATTTGATTGAGAGCCACACCGCCATTGCCACGCCGTCGTCGCTGTCTCCGGAACTGTCAACTGGCCGGTGGCCCTCAACCACCCCTCCCTTTTGACAGCTTCAAATCATCAACTCGGCCTATTTAATCTCTCTCTGCTGCGGCTCTCCGGAGCCCCTGCAGGAGGTTTCGTCTCAACTTCTTACATTTCTGAGAGACGTTGCAGAGAGAGATTTCGTTCTTCCATTTCAAATTATCTTGTTTTTTCACCTAGAAGCTTCTTCTTCCTTTAACAATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTTTTATTTGGTGTTGTTTTTGTTTTGGCTATGCTTCTCCCTGCTTCTGCTCAATCTCTGGCTCCGGCCCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCTAAATTTCATCCACAAAATAACTAGATTCAGATATCACAGAGCTGGAATTTAAAAATGGGGTTCAAGAATTTATCACTTTT

Coding sequence (CDS)

ATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTTTTATTTGGTGTTGTTTTTGTTTTGGCTATGCTTCTCCCTGCTTCTGCTCAATCTCTGGCTCCGGCCCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCTAA

Protein sequence

MAVVANKIPFGVLFGVVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
BLAST of CmaCh15G012660 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-10
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 1

Query: 6  NKIPFGVLFGVVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH 65
          N +    LF  VF + + L A AQSLAPA  P  SDGTSIDQGIAY+LM++ALVLTY+IH
Sbjct: 5  NSVTGFALFSFVFAVILSL-AGAQSLAPAPAPT-SDGTSIDQGIAYLLMVVALVLTYLIH 64

Query: 66 SADLSISF 74
            D S S+
Sbjct: 65 PLDASSSY 70

BLAST of CmaCh15G012660 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-09
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1

Query: 4  VANKIPFGVLFGVVFVLAMLLP-ASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTY 63
          +A++    V+    FV A++ P A AQSLAPA  P  SDGTSIDQGIAY+LM++ALVLTY
Sbjct: 1  MASRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPT-SDGTSIDQGIAYLLMVVALVLTY 60

Query: 64 IIHSADLSIS 73
          +IH  D S S
Sbjct: 61 LIHPLDASSS 69

BLAST of CmaCh15G012660 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-07
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query: 7  KIPFGVLFGVVFVLAMLLP-ASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH 66
          K P  +L   V +  +LLP A + S +PA  P  SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 5  KFPLEILAVFVIISVILLPIAQSHSSSPAPAPT-SDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of CmaCh15G012660 vs. TrEMBL
Match: A0A0A0KK44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151510 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-17
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 1

Query: 1  MAVVANKIPFG-VLFGVVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA K+PFG +LF V  VL  L  A AQSL+PAQPPA  DGTSIDQGIAYVLMLLALV
Sbjct: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLSIS 73
          LTYIIHSADL +S
Sbjct: 61 LTYIIHSADLYVS 73

BLAST of CmaCh15G012660 vs. TrEMBL
Match: A0A0D9VEH9_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-10
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1  MAVVANKIPFGVLFGVVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60
          MA  A++ PF V+   VFV+ +++PA+A + APA  P  SDGTSIDQGIAY+LML+ALVL
Sbjct: 1  MAAAASRAPFRVVALAVFVVGIVMPAAAVAQAPAPAPV-SDGTSIDQGIAYILMLVALVL 60

Query: 61 TYIIHSADLS 71
          TY+IH  D S
Sbjct: 61 TYLIHPLDAS 69

BLAST of CmaCh15G012660 vs. TrEMBL
Match: B9RCN6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691010 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-10
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1

Query: 16 VVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF 74
          V  + A+ LP  AQS APA  P  SDGTSIDQGIAYVLML+ALVLTY+IH+ADL+ SF
Sbjct: 12 VALIFAIALPVQAQSSAPAPAPT-SDGTSIDQGIAYVLMLVALVLTYLIHAADLTCSF 68

BLAST of CmaCh15G012660 vs. TrEMBL
Match: A0A067JZA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1

Query: 3  VVANKIPFGVL-FGVVFVLAMLLPA-SAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 62
          +  +++ FGVL F V  V A+ LP+  AQS APA  P  SDGTSIDQGIAYVLML+ALVL
Sbjct: 1  MAVSRVSFGVLAFAVALVFAIALPSVQAQSFAPAPSPT-SDGTSIDQGIAYVLMLVALVL 60

Query: 63 TYIIHSAD 69
          TY+IH+AD
Sbjct: 61 TYLIHAAD 67

BLAST of CmaCh15G012660 vs. TrEMBL
Match: A0A0E0PYE4_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-09
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1

Query: 11  GVLFGVVFVLAMLLPASAQSLAPAQPPA---ASDGTSIDQGIAYVLMLLALVLTYIIHSA 70
           G+    V V+ + +PASA + APAQPPA   +SDGTSIDQGIAYVLML+ALVLTY+IH  
Sbjct: 106 GLAAVAVVVVGIAMPASASAAAPAQPPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPL 165

BLAST of CmaCh15G012660 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-11
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 1

Query: 6  NKIPFGVLFGVVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH 65
          N +    LF  VF + + L A AQSLAPA  P  SDGTSIDQGIAY+LM++ALVLTY+IH
Sbjct: 5  NSVTGFALFSFVFAVILSL-AGAQSLAPAPAPT-SDGTSIDQGIAYLLMVVALVLTYLIH 64

Query: 66 SADLSISF 74
            D S S+
Sbjct: 65 PLDASSSY 70

BLAST of CmaCh15G012660 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1

Query: 6  NKIPFGVLFGVVFVLAMLLP-ASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYII 65
          +++ FGV   V  + A+LLP A AQS APA  P  SDGT+IDQGIAYVLML+ALVLTY+I
Sbjct: 4  SRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPT-SDGTTIDQGIAYVLMLVALVLTYLI 63

BLAST of CmaCh15G012660 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1

Query: 4  VANKIPFGVLFGVVFVLAMLLP-ASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTY 63
          +A++    V+    FV A++ P A AQSLAPA  P  SDGTSIDQGIAY+LM++ALVLTY
Sbjct: 1  MASRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPT-SDGTSIDQGIAYLLMVVALVLTY 60

Query: 64 IIHSADLSIS 73
          +IH  D S S
Sbjct: 61 LIHPLDASSS 69

BLAST of CmaCh15G012660 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-08
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query: 7  KIPFGVLFGVVFVLAMLLP-ASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH 66
          K P  +L   V +  +LLP A + S +PA  P  SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 5  KFPLEILAVFVIISVILLPIAQSHSSSPAPAPT-SDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of CmaCh15G012660 vs. NCBI nr
Match: gi|659074005|ref|XP_008437371.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1

Query: 1  MAVVANKIPF-GVLFGVVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA KIPF G+LF V  VL  L PA AQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSADLSIS 73
          LTYIIHSAD  +S
Sbjct: 61 LTYIIHSADRYVS 73

BLAST of CmaCh15G012660 vs. NCBI nr
Match: gi|449452418|ref|XP_004143956.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-17
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 1

Query: 1  MAVVANKIPFG-VLFGVVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA K+PFG +LF V  VL  L  A AQSL+PAQPPA  DGTSIDQGIAYVLMLLALV
Sbjct: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLSIS 73
          LTYIIHSADL +S
Sbjct: 61 LTYIIHSADLYVS 73

BLAST of CmaCh15G012660 vs. NCBI nr
Match: gi|255537709|ref|XP_002509921.1| (PREDICTED: arabinogalactan peptide 22 [Ricinus communis])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1

Query: 16 VVFVLAMLLPASAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF 74
          V  + A+ LP  AQS APA  P  SDGTSIDQGIAYVLML+ALVLTY+IH+ADL+ SF
Sbjct: 12 VALIFAIALPVQAQSSAPAPAPT-SDGTSIDQGIAYVLMLVALVLTYLIHAADLTCSF 68

BLAST of CmaCh15G012660 vs. NCBI nr
Match: gi|802735165|ref|XP_012086771.1| (PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1

Query: 3  VVANKIPFGVL-FGVVFVLAMLLPA-SAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 62
          +  +++ FGVL F V  V A+ LP+  AQS APA  P  SDGTSIDQGIAYVLML+ALVL
Sbjct: 1  MAVSRVSFGVLAFAVALVFAIALPSVQAQSFAPAPSPT-SDGTSIDQGIAYVLMLVALVL 60

Query: 63 TYIIHSAD 69
          TY+IH+AD
Sbjct: 61 TYLIHAAD 67

BLAST of CmaCh15G012660 vs. NCBI nr
Match: gi|502139093|ref|XP_004503642.1| (PREDICTED: arabinogalactan peptide 16-like [Cicer arietinum])

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-09
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1

Query: 3  VVANKIPFGVLFGVVFVLAML-----LPAS--AQSLAPAQPPAASDGTSIDQGIAYVLML 62
          + A K  FG  FGVV +LA L     LPA+  +QSLAPA  P  SDG+S+DQGIAY+LML
Sbjct: 1  MAAPKHSFG--FGVVAMLATLIFALSLPAAVHSQSLAPAPAPT-SDGSSVDQGIAYLLML 60

Query: 63 LALVLTYIIHSADLSISF 74
          LALVLTYIIHSAD+S +F
Sbjct: 61 LALVLTYIIHSADISSTF 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGP16_ARATH8.2e-1058.82Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1[more]
AGP20_ARATH3.1e-0957.14Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
AGP22_ARATH5.0e-0756.67Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KK44_CUCSA3.7e-1776.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151510 PE=4 SV=1[more]
A0A0D9VEH9_9ORYZ3.3e-1058.57Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
B9RCN6_RICCO7.5e-1068.97Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691010 PE=4 SV=1[more]
A0A067JZA6_JATCU1.3e-0963.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1[more]
A0A0E0PYE4_ORYRU2.2e-0963.49Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46330.14.6e-1158.82 arabinogalactan protein 16[more]
AT5G24105.11.8e-1063.93 arabinogalactan protein 41[more]
AT3G61640.11.8e-1057.14 arabinogalactan protein 20[more]
AT5G53250.12.8e-0856.67 arabinogalactan protein 22[more]
Match NameE-valueIdentityDescription
gi|659074005|ref|XP_008437371.1|1.8e-1778.08PREDICTED: arabinogalactan peptide 22-like [Cucumis melo][more]
gi|449452418|ref|XP_004143956.1|5.3e-1776.71PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus][more]
gi|255537709|ref|XP_002509921.1|1.1e-0968.97PREDICTED: arabinogalactan peptide 22 [Ricinus communis][more]
gi|802735165|ref|XP_012086771.1|1.8e-0963.24PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas][more]
gi|502139093|ref|XP_004503642.1|2.4e-0962.82PREDICTED: arabinogalactan peptide 16-like [Cicer arietinum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G012660.1CmaCh15G012660.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 32..65
score: 3.2
NoneNo IPR availablePANTHERPTHR33374FAMILY NOT NAMEDcoord: 1..73
score: 1.6
NoneNo IPR availablePANTHERPTHR33374:SF6ARABINOGALACTAN PEPTIDE 16-RELATEDcoord: 1..73
score: 1.6

The following gene(s) are paralogous to this gene:

None