CSPI05G04790 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTATATTGATCCATGATAGACTATTTGAAGAAAATCCAATAAAAGGGTATGAAAAGGGCGATTTAAACGGACATGGCAGTTGGTAGTTACAACATTCCAAAGCAAATGAGGCTATAAAATCCATAGCCCCATTGATTGAGAAGCAGACCGCCATTGCCACGCCGTCGTTCTTCTACACAGGGACTGTCAAATTGGAGGGTTTGGCTAGCCCTCTCCCCCCATCCCCTTTTGACAGTTTCAAATCATTTATCAATTCACGGCCTAAATACACTTTAATTTTCTAATAATATCTCTCTCTGCTACGCCTCTCCGGACCTTTTCTTCTTAACCTTTTCAATTCTTGAGAGACGTTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGAGAGAGATCTCATTCCTTCTTCCTTTACTAATTTTCCATTACAAGCTTCTCCTTTTTTTTCAACATGGCGGTCGTTGCTTGTAAGGTCCCTTTTGGTGGCATTTTGTTTGTTGTTGCTTTAGTTTTGACCAGGCTTTCCTCTGCTTATGCTCAATCGTTGTCTCCGGCTCAACCACCTGCTACTGGCGATGGTAACTTCTTCATCTTCGTCTGATCATTTTTTAACCACACTTTTTATAACCATTTTTGTTCATCTTAACTGATGGAAAATTGTTGTAATTTTGATTTGTAGGAACAAGCATAGATCAGGGGATTGCCTATGTATTGATGTTGTTGGCGTTGGTGCTCACCTACATTATCCATTCAGCGGATCTTTACGTCAGTTTATAAATTCCTTCACAAAACTAATTCAGATTCAGATTCAGATTTCAAATGGGGTTGAAGAATTTATGATAGGAAAATATGATCTCATGGACTAAACTTTACATGTAAATTAATGAAAATGATGATTTCTTTTACCTCAATGGTGGATTTTTCTTGTCCATCTTCCCTTGTCAGTTTTGTTTCTTTTTAAATTAACTATTGTTAATAAAGCAGACATTTTTAGCGTTCATGTCATATTTATTAGAACAATTGTTGAATAGATAAAAAAAGGCCGTCGTGTCGGTGCCATGTTGGTCCAAGAGACCAACTTAAATATTGTGCTTAGCATAACAGATTAGAATGATTGAACGAAACAAACATAATTGATATCCATAAGCTTC ATGGCGGTCGTTGCTTGTAAGGTCCCTTTTGGTGGCATTTTGTTTGTTGTTGCTTTAGTTTTGACCAGGCTTTCCTCTGCTTATGCTCAATCGTTGTCTCCGGCTCAACCACCTGCTACTGGCGATGGAACAAGCATAGATCAGGGGATTGCCTATGTATTGATGTTGTTGGCGTTGGTGCTCACCTACATTATCCATTCAGCGGATCTTTACGTCAGTTTATAA ATGGCGGTCGTTGCTTGTAAGGTCCCTTTTGGTGGCATTTTGTTTGTTGTTGCTTTAGTTTTGACCAGGCTTTCCTCTGCTTATGCTCAATCGTTGTCTCCGGCTCAACCACCTGCTACTGGCGATGGAACAAGCATAGATCAGGGGATTGCCTATGTATTGATGTTGTTGGCGTTGGTGCTCACCTACATTATCCATTCAGCGGATCTTTACGTCAGTTTATAA
BLAST of CSPI05G04790 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08 Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1
BLAST of CSPI05G04790 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07 Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1
BLAST of CSPI05G04790 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 5.6e-06 Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 1
BLAST of CSPI05G04790 vs. TrEMBL
Match: A0A0A0KK44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151510 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 1.1e-29 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
BLAST of CSPI05G04790 vs. TrEMBL
Match: A0A067JZA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 5.9e-10 Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
BLAST of CSPI05G04790 vs. TrEMBL
Match: B6T2G3_MAIZE (AGP16 OS=Zea mays PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 8.5e-09 Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
BLAST of CSPI05G04790 vs. TrEMBL
Match: B4FD31_MAIZE (AGP16 OS=Zea mays GN=Zm.81108 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 8.5e-09 Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
BLAST of CSPI05G04790 vs. TrEMBL
Match: V7CMG6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G162600g PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08 Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1
BLAST of CSPI05G04790 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16) HSP 1 Score: 60.1 bits (144), Expect = 6.8e-10 Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1
BLAST of CSPI05G04790 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41) HSP 1 Score: 58.5 bits (140), Expect = 2.0e-09 Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
BLAST of CSPI05G04790 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20) HSP 1 Score: 56.6 bits (135), Expect = 7.6e-09 Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1
BLAST of CSPI05G04790 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22) HSP 1 Score: 51.2 bits (121), Expect = 3.2e-07 Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 1
BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|449452418|ref|XP_004143956.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus]) HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|659074005|ref|XP_008437371.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]) HSP 1 Score: 122.5 bits (306), Expect = 3.2e-25 Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 1
BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|802735165|ref|XP_012086771.1| (PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]) HSP 1 Score: 71.2 bits (173), Expect = 8.4e-10 Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|194691880|gb|ACF80024.1| (unknown [Zea mays]) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08 Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|226529284|ref|NP_001148394.1| (AGP16 precursor [Zea mays]) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08 Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |