CSPI05G04790 (gene) Wild cucumber (PI 183967)

NameCSPI05G04790
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionArabinogalactan peptide-like protein
LocationChr5 : 4588372 .. 4589528 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTATATTGATCCATGATAGACTATTTGAAGAAAATCCAATAAAAGGGTATGAAAAGGGCGATTTAAACGGACATGGCAGTTGGTAGTTACAACATTCCAAAGCAAATGAGGCTATAAAATCCATAGCCCCATTGATTGAGAAGCAGACCGCCATTGCCACGCCGTCGTTCTTCTACACAGGGACTGTCAAATTGGAGGGTTTGGCTAGCCCTCTCCCCCCATCCCCTTTTGACAGTTTCAAATCATTTATCAATTCACGGCCTAAATACACTTTAATTTTCTAATAATATCTCTCTCTGCTACGCCTCTCCGGACCTTTTCTTCTTAACCTTTTCAATTCTTGAGAGACGTTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGAGAGAGATCTCATTCCTTCTTCCTTTACTAATTTTCCATTACAAGCTTCTCCTTTTTTTTCAACATGGCGGTCGTTGCTTGTAAGGTCCCTTTTGGTGGCATTTTGTTTGTTGTTGCTTTAGTTTTGACCAGGCTTTCCTCTGCTTATGCTCAATCGTTGTCTCCGGCTCAACCACCTGCTACTGGCGATGGTAACTTCTTCATCTTCGTCTGATCATTTTTTAACCACACTTTTTATAACCATTTTTGTTCATCTTAACTGATGGAAAATTGTTGTAATTTTGATTTGTAGGAACAAGCATAGATCAGGGGATTGCCTATGTATTGATGTTGTTGGCGTTGGTGCTCACCTACATTATCCATTCAGCGGATCTTTACGTCAGTTTATAAATTCCTTCACAAAACTAATTCAGATTCAGATTCAGATTTCAAATGGGGTTGAAGAATTTATGATAGGAAAATATGATCTCATGGACTAAACTTTACATGTAAATTAATGAAAATGATGATTTCTTTTACCTCAATGGTGGATTTTTCTTGTCCATCTTCCCTTGTCAGTTTTGTTTCTTTTTAAATTAACTATTGTTAATAAAGCAGACATTTTTAGCGTTCATGTCATATTTATTAGAACAATTGTTGAATAGATAAAAAAAGGCCGTCGTGTCGGTGCCATGTTGGTCCAAGAGACCAACTTAAATATTGTGCTTAGCATAACAGATTAGAATGATTGAACGAAACAAACATAATTGATATCCATAAGCTTC

mRNA sequence

ATGGCGGTCGTTGCTTGTAAGGTCCCTTTTGGTGGCATTTTGTTTGTTGTTGCTTTAGTTTTGACCAGGCTTTCCTCTGCTTATGCTCAATCGTTGTCTCCGGCTCAACCACCTGCTACTGGCGATGGAACAAGCATAGATCAGGGGATTGCCTATGTATTGATGTTGTTGGCGTTGGTGCTCACCTACATTATCCATTCAGCGGATCTTTACGTCAGTTTATAA

Coding sequence (CDS)

ATGGCGGTCGTTGCTTGTAAGGTCCCTTTTGGTGGCATTTTGTTTGTTGTTGCTTTAGTTTTGACCAGGCTTTCCTCTGCTTATGCTCAATCGTTGTCTCCGGCTCAACCACCTGCTACTGGCGATGGAACAAGCATAGATCAGGGGATTGCCTATGTATTGATGTTGTTGGCGTTGGTGCTCACCTACATTATCCATTCAGCGGATCTTTACGTCAGTTTATAA
BLAST of CSPI05G04790 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1

Query: 15 FVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD 70
          FV A++L   S A AQSL+PA  P T DGTSIDQGIAY+LM++ALVLTY+IH  D
Sbjct: 15 FVFAVIL---SLAGAQSLAPAPAP-TSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65

BLAST of CSPI05G04790 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1

Query: 13 ILFVVALVLTRLSS-AYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD 70
          ++ + A V   +S  A AQSL+PA  P T DGTSIDQGIAY+LM++ALVLTY+IH  D
Sbjct: 9  VIALFAFVFAVISPFAGAQSLAPAPSP-TSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65

BLAST of CSPI05G04790 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.6e-06
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 1

Query: 3  VVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLT 62
          + + K P   +   V + +  L  A + S SPA  P T DGTSIDQGIAYVLM++AL LT
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAP-TSDGTSIDQGIAYVLMMVALALT 60

Query: 63 YIIH 67
          Y IH
Sbjct: 61 YFIH 63

BLAST of CSPI05G04790 vs. TrEMBL
Match: A0A0A0KK44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151510 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-29
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60
          MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV
Sbjct: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLYVSL 75
          LTYIIHSADLYVSL
Sbjct: 61 LTYIIHSADLYVSL 74

BLAST of CSPI05G04790 vs. TrEMBL
Match: A0A067JZA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.9e-10
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1

Query: 7  KVPFGGILFVVALVLT-RLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYII 66
          +V FG + F VALV    L S  AQS +PA  P T DGTSIDQGIAYVLML+ALVLTY+I
Sbjct: 5  RVSFGVLAFAVALVFAIALPSVQAQSFAPAPSP-TSDGTSIDQGIAYVLMLVALVLTYLI 64

Query: 67 HSAD 70
          H+AD
Sbjct: 65 HAAD 67

BLAST of CSPI05G04790 vs. TrEMBL
Match: B6T2G3_MAIZE (AGP16 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-09
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1

Query: 9  PFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSA 68
          P  G   V+ + +    +A A +L+PA  PAT DGTS+DQGIAYVLML+ALVLTY+IH  
Sbjct: 3  PISGATAVLVMAVVATLAAAANALAPAPAPATSDGTSVDQGIAYVLMLVALVLTYLIHPL 62

Query: 69 D 70
          D
Sbjct: 63 D 63

BLAST of CSPI05G04790 vs. TrEMBL
Match: B4FD31_MAIZE (AGP16 OS=Zea mays GN=Zm.81108 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-09
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1

Query: 9  PFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSA 68
          P  G   V+ + +    +A A +L+PA  PAT DGTS+DQGIAYVLML+ALVLTY+IH  
Sbjct: 3  PISGATAVLVMAVVATLAAAANALAPAPAPATSDGTSVDQGIAYVLMLVALVLTYLIHPL 62

Query: 69 D 70
          D
Sbjct: 63 D 63

BLAST of CSPI05G04790 vs. TrEMBL
Match: V7CMG6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G162600g PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1

Query: 1  MAVVACKVPFGGILFVVALVLTRLS--SAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLA 60
          MA+      FG +  +++L+ T     SA+AQSL PA PP T DGTSIDQG+AYVLM+LA
Sbjct: 1  MAIFRFSFGFGLLALLLSLIFTLYVPLSAHAQSLPPAPPP-TSDGTSIDQGVAYVLMMLA 60

Query: 61 LVLTYIIHSADLY 72
          L LTY+IHS+ ++
Sbjct: 61 LALTYLIHSSSVF 72

BLAST of CSPI05G04790 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 60.1 bits (144), Expect = 6.8e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1

Query: 15 FVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD 70
          FV A++L   S A AQSL+PA  P T DGTSIDQGIAY+LM++ALVLTY+IH  D
Sbjct: 15 FVFAVIL---SLAGAQSLAPAPAP-TSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65

BLAST of CSPI05G04790 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-09
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1

Query: 10 FGGILFVVALVLT-RLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH 67
          F G+  +V+++    L  A+AQS +PA  P T DGT+IDQGIAYVLML+ALVLTY+IH
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQSAAPAPAP-TSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of CSPI05G04790 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 56.6 bits (135), Expect = 7.6e-09
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1

Query: 13 ILFVVALVLTRLSS-AYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD 70
          ++ + A V   +S  A AQSL+PA  P T DGTSIDQGIAY+LM++ALVLTY+IH  D
Sbjct: 9  VIALFAFVFAVISPFAGAQSLAPAPSP-TSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65

BLAST of CSPI05G04790 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-07
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 1

Query: 3  VVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLT 62
          + + K P   +   V + +  L  A + S SPA  P T DGTSIDQGIAYVLM++AL LT
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAP-TSDGTSIDQGIAYVLMMVALALT 60

Query: 63 YIIH 67
          Y IH
Sbjct: 61 YFIH 63

BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|449452418|ref|XP_004143956.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60
          MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV
Sbjct: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLYVSL 75
          LTYIIHSADLYVSL
Sbjct: 61 LTYIIHSADLYVSL 74

BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|659074005|ref|XP_008437371.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.2e-25
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60
          MAVVACK+PF GILFVVALVLTRLS A AQSLSPAQPPAT DGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSADLYVSL 75
          LTYIIHSAD YVSL
Sbjct: 61 LTYIIHSADRYVSL 74

BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|802735165|ref|XP_012086771.1| (PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas])

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-10
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1

Query: 7  KVPFGGILFVVALVLT-RLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYII 66
          +V FG + F VALV    L S  AQS +PA  P T DGTSIDQGIAYVLML+ALVLTY+I
Sbjct: 5  RVSFGVLAFAVALVFAIALPSVQAQSFAPAPSP-TSDGTSIDQGIAYVLMLVALVLTYLI 64

Query: 67 HSAD 70
          H+AD
Sbjct: 65 HAAD 67

BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|194691880|gb|ACF80024.1| (unknown [Zea mays])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1

Query: 9  PFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSA 68
          P  G   V+ + +    +A A +L+PA  PAT DGTS+DQGIAYVLML+ALVLTY+IH  
Sbjct: 3  PISGATAVLVMAVVATLAAAANALAPAPAPATSDGTSVDQGIAYVLMLVALVLTYLIHPL 62

Query: 69 D 70
          D
Sbjct: 63 D 63

BLAST of CSPI05G04790 vs. NCBI nr
Match: gi|226529284|ref|NP_001148394.1| (AGP16 precursor [Zea mays])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1

Query: 9  PFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSA 68
          P  G   V+ + +    +A A +L+PA  PAT DGTS+DQGIAYVLML+ALVLTY+IH  
Sbjct: 3  PISGATAVLVMAVVATLAAAANALAPAPAPATSDGTSVDQGIAYVLMLVALVLTYLIHPL 62

Query: 69 D 70
          D
Sbjct: 63 D 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGP16_ARATH1.2e-0865.45Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1[more]
AGP20_ARATH1.3e-0758.62Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
AGP22_ARATH5.6e-0650.00Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KK44_CUCSA1.1e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151510 PE=4 SV=1[more]
A0A067JZA6_JATCU5.9e-1065.63Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1[more]
B6T2G3_MAIZE8.5e-0955.74AGP16 OS=Zea mays PE=2 SV=1[more]
B4FD31_MAIZE8.5e-0955.74AGP16 OS=Zea mays GN=Zm.81108 PE=2 SV=1[more]
V7CMG6_PHAVU1.4e-0853.42Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G162600g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46330.16.8e-1065.45 arabinogalactan protein 16[more]
AT5G24105.12.0e-0958.62 arabinogalactan protein 41[more]
AT3G61640.17.6e-0958.62 arabinogalactan protein 20[more]
AT5G53250.13.2e-0750.00 arabinogalactan protein 22[more]
Match NameE-valueIdentityDescription
gi|449452418|ref|XP_004143956.1|1.6e-29100.00PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus][more]
gi|659074005|ref|XP_008437371.1|3.2e-2590.54PREDICTED: arabinogalactan peptide 22-like [Cucumis melo][more]
gi|802735165|ref|XP_012086771.1|8.4e-1065.63PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas][more]
gi|194691880|gb|ACF80024.1|1.2e-0855.74unknown [Zea mays][more]
gi|226529284|ref|NP_001148394.1|1.2e-0855.74AGP16 precursor [Zea mays][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006811 ion transport
biological_process GO:0050896 response to stimulus
biological_process GO:0044763 single-organism cellular process
biological_process GO:0009612 response to mechanical stimulus
cellular_component GO:0005575 cellular_component
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G04790.1CSPI05G04790.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 34..66
score: 4.3
NoneNo IPR availablePANTHERPTHR33374FAMILY NOT NAMEDcoord: 3..70
score: 6.7
NoneNo IPR availablePANTHERPTHR33374:SF6ARABINOGALACTAN PEPTIDE 16-RELATEDcoord: 3..70
score: 6.7