CmaCh02G014010 (gene) Cucurbita maxima (Rimu)

NameCmaCh02G014010
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 8118724 .. 8120024 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGGGCCTCAAAATGACCGAGTCGCGTGGGGAAACATGCAGTAGCTGCAACATTTCCGGCCATGCCGTTCGAAGCATGCAGCGGGTATAAGACCCAGACCCTGGATTGGTTGAAAGCCACACCGCCATTGCAACGCCGTGGAGAGCAGCCATCGTCGTCTTCGGGATTGAGTAATTCAGTTTGTGTATTAGTCTCTCTCTCCTGCGCCTCTCCGGAGAGGGAGATTAATTGTCGTCGAACACTACATACCAATAACAATGGAGGTCGTTGCTTATATTAAGGTCCCTTATGGCGTTTTAGTCGCTGTTGCTTTTGTTTTGGCTATGCTTTTCCCTGCCTCCGCCGCTGATCCTTCTTTGTCTCCAGCCCAACCTCCCATTGCTAGCGATGGTTTGTTCATTTCATTATTATTGAGAACAAATAAAAAATAAGAACATGCTAGTAATTAATTTCTATGTTTGGAAATTTGCAGGGACGAGCTTAGACCAAGGAATAGCGTACGTGCTGATGTTGTTGGCGTTGCTGCTAACTTACATTATTCATTTAGCAGAGCTTCCAATCAGTTTGTAAAATTAGTGCACAAAATGATTAAATTCAATCCCGAGAGCTCCAATGTAAAAAGGTGGGGTTTTTGTTTTCTTTTTTCTTTGCAGTTTAATGTCAATTGATGCCATGATCATTTCTTTTACCTCAATGCTCCAATGTTGAGTGGTTGGATGATGTTTTTCTAAAGAGTAAAAAAGCTTCCCAGAATAATGTATTGCTCACAAACAACAGAGATCGATCTGCTAGAAAGATTCCCAAAATAATTCTTTCAACTTCAACAAAATTTATTGGATTTGTTTGGAACTAACTCCATGAAGGAATTCAAAGGTGTCATCATTTTGATAGAATTCAGTCCCAAATAAGACAATGTCTCCTACAAATGGAAACTTCAATTGCTTCCTTCAAGTGCTCTTCTTACCACTTGGTTTTGCTCGTTCTTCATCAGCCAACGAGAACTTTTTCACTTTCTGGCGAAGGATGAAGCAACAAATTCAAGGAAAAGAAAACAACAGTTACATTTTGTTGCTTATACAGCAAATATGAATATGAATGTGAAGCAAGTGTTAAGCGTTTAAGTGAATCTATGTAATCTATGTGCCTGGAATGTTGAGGACAAAAAGTTCAAGCCAATCCGAACAAAAAATCAAATCAAGAAACCACGCGTTTGAGTATTTTAATCAGCGTTGCAGTGAGAAGTGAATTACAATTACCTGCCATATCCTAAATTGTGAAACCAAAGATCATTCCAG

mRNA sequence

ATGGATGAGGGCCTCAAAATGACCGAGTCGCGTGGGGAAACATGCAGTAGCTGCAACATTTCCGGCCATGCCGTTCGAAGCATGCAGCGGTCTCTCTCTCCTGCGCCTCTCCGGAGAGGGAGATTAATTGTCGTCGAACACTACATACCAATAACAATGGAGGTCGTTGCTTATATTAAGGTCCCTTATGGCGTTTTAGTCGCTGTTGCTTTTGTTTTGGCTATGCTTTTCCCTGCCTCCGCCGCTGATCCTTCTTTGTCTCCAGCCCAACCTCCCATTGCTAGCGATGGGACGAGCTTAGACCAAGGAATAGCGTACGTGCTGATGTTGTTGGCGTTGCTGCTAACTTACATTATTCATTTAGCAGAGCTTCCAATCAGTTTGTAAAATTAGTGCACAAAATGATTAAATTCAATCCCGAGAGCTCCAATGTAAAAAGGTGTCATCATTTTGATAGAATTCAGTCCCAAATAAGACAATGTCTCCTACAAATGGAAACTTCAATTGCTTCCTTCAAGTGCTCTTCTTACCACTTGGTTTTGCTCGTTCTTCATCAGCCAACGAGAACTTTTTCACTTTCTGGCGAAGGATGAAGCAACAAATTCAAGGAAAAGAAAACAACAGTTACATTTTGTTGCTTATACAGCAAATATGAATATGAATGTGAAGCAAGTGTTAAGCGTTTAAGTGAATCTATGTAATCTATGTGCCTGGAATGTTGAGGACAAAAAGTTCAAGCCAATCCGAACAAAAAATCAAATCAAGAAACCACGCGTTTGAGTATTTTAATCAGCGTTGCAGTGAGAAGTGAATTACAATTACCTGCCATATCCTAAATTGTGAAACCAAAGATCATTCCAG

Coding sequence (CDS)

ATGGATGAGGGCCTCAAAATGACCGAGTCGCGTGGGGAAACATGCAGTAGCTGCAACATTTCCGGCCATGCCGTTCGAAGCATGCAGCGGTCTCTCTCTCCTGCGCCTCTCCGGAGAGGGAGATTAATTGTCGTCGAACACTACATACCAATAACAATGGAGGTCGTTGCTTATATTAAGGTCCCTTATGGCGTTTTAGTCGCTGTTGCTTTTGTTTTGGCTATGCTTTTCCCTGCCTCCGCCGCTGATCCTTCTTTGTCTCCAGCCCAACCTCCCATTGCTAGCGATGGGACGAGCTTAGACCAAGGAATAGCGTACGTGCTGATGTTGTTGGCGTTGCTGCTAACTTACATTATTCATTTAGCAGAGCTTCCAATCAGTTTGTAA

Protein sequence

MDEGLKMTESRGETCSSCNISGHAVRSMQRSLSPAPLRRGRLIVVEHYIPITMEVVAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
BLAST of CmaCh02G014010 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.6e-06
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1

Query: 65  VLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 121
           V+   AFV A++ P + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Sbjct: 9   VIALFAFVFAVISPFAGAQ-SLAPAPSP-TSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CmaCh02G014010 vs. TrEMBL
Match: A0A0A0KK44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151510 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1

Query: 53  MEVVAYIKVPYG-VLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLL 112
           M VVA  KVP+G +L  VA VL  L  +SA   SLSPAQPP   DGTS+DQGIAYVLMLL
Sbjct: 1   MAVVA-CKVPFGGILFVVALVLTRL--SSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLL 60

Query: 113 ALLLTYIIHLAELPISL 129
           AL+LTYIIH A+L +SL
Sbjct: 61  ALVLTYIIHSADLYVSL 74

BLAST of CmaCh02G014010 vs. TrEMBL
Match: W9RQA8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012077 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1

Query: 56  VAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLL 115
           +A  KV  GV   +A VL++ FPA+ A  + +PA  P  SDGTS+DQGIAYVLML+AL+L
Sbjct: 1   MAISKVLVGVFAVIALVLSVSFPAAMAQAT-APAPAP-TSDGTSIDQGIAYVLMLVALVL 60

Query: 116 TYIIHLAELPIS 128
           TY+IH A +  S
Sbjct: 61  TYLIHAANISYS 70

BLAST of CmaCh02G014010 vs. TrEMBL
Match: A0A124SBV6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006148 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1

Query: 60  KVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPI-ASDGTSLDQGIAYVLMLLALLLTYI 119
           KV +G+L A   + A+  P +      +PA  P   SDGTS+DQGIAY+LMLLAL+LTYI
Sbjct: 5   KVSFGLLSAFVLIFAITLPTAVHGQPFAPAPAPAPTSDGTSIDQGIAYLLMLLALVLTYI 64

Query: 120 IHLAELPISL 129
           IH  + P+ L
Sbjct: 65  IHTLDTPVDL 74

BLAST of CmaCh02G014010 vs. TrEMBL
Match: A0A118JTN1_CYNCS (Arabinogalactan peptide, AGP OS=Cynara cardunculus var. scolymus GN=Ccrd_007988 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1

Query: 69  VAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELP 126
           VA + A+ FPA+     L+PA  P  SDGTS+DQGIAYVLML+AL+LTY+IH+ + P
Sbjct: 10  VALIFAIAFPAAVHAQPLAPAPAP-TSDGTSIDQGIAYVLMLVALVLTYVIHILDSP 65

BLAST of CmaCh02G014010 vs. TrEMBL
Match: A0A0V0H965_SOLCH (Putative arabinogalactan peptide 22-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1

Query: 60  KVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYII 119
           K+ +  +VA A V +  FPA  A   L+PA  P ASDGT++DQGIA VLMLLAL +TY++
Sbjct: 7   KLLFSFVVAFALVFSAFFPAVQAQEGLAPAPAP-ASDGTTIDQGIACVLMLLALAVTYLV 66

Query: 120 HLAELP 126
           H A++P
Sbjct: 67  HAADVP 71

BLAST of CmaCh02G014010 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1

Query: 63  YGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 121
           +GV   V+ + A+L P + A  S +PA  P  SDGT++DQGIAYVLML+AL+LTY+IH
Sbjct: 8   FGVSTIVSIIFAILLPMAHAQ-SAAPAPAP-TSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of CmaCh02G014010 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 52.0 bits (123), Expect = 3.2e-07
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1

Query: 65  VLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 121
           V+   AFV A++ P + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Sbjct: 9   VIALFAFVFAVISPFAGAQ-SLAPAPSP-TSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CmaCh02G014010 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 1

Query: 56  VAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLL 115
           +A +K P  +L     +  +L P + +  S SPA  P  SDGTS+DQGIAYVLM++AL L
Sbjct: 1   MASLKFPLEILAVFVIISVILLPIAQSHSS-SPAPAP-TSDGTSIDQGIAYVLMMVALAL 60

Query: 116 TYIIH 121
           TY IH
Sbjct: 61  TYFIH 63

BLAST of CmaCh02G014010 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 1

Query: 70  AFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 121
           +FV A++   + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Sbjct: 14  SFVFAVILSLAGAQ-SLAPAPAP-TSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CmaCh02G014010 vs. NCBI nr
Match: gi|659074005|ref|XP_008437371.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 4.9e-10
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 1

Query: 53  MEVVAYIKVPY-GVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLL 112
           M VVA  K+P+ G+L  VA VL  L PA A   SLSPAQPP  SDGTS+DQGIAY LMLL
Sbjct: 1   MAVVA-CKIPFSGILFVVALVLTRLSPACAQ--SLSPAQPPATSDGTSIDQGIAYALMLL 60

Query: 113 ALLLTYIIHLAELPISL 129
           AL+LTYIIH A+  +SL
Sbjct: 61  ALVLTYIIHSADRYVSL 74

BLAST of CmaCh02G014010 vs. NCBI nr
Match: gi|449452418|ref|XP_004143956.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.9e-10
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1

Query: 53  MEVVAYIKVPYG-VLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLL 112
           M VVA  KVP+G +L  VA VL  L  +SA   SLSPAQPP   DGTS+DQGIAYVLMLL
Sbjct: 1   MAVVA-CKVPFGGILFVVALVLTRL--SSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLL 60

Query: 113 ALLLTYIIHLAELPISL 129
           AL+LTYIIH A+L +SL
Sbjct: 61  ALVLTYIIHSADLYVSL 74

BLAST of CmaCh02G014010 vs. NCBI nr
Match: gi|697188027|ref|XP_009603048.1| (PREDICTED: arabinogalactan peptide 22-like [Nicotiana tomentosiformis])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1

Query: 53  MEVVAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 112
           M ++   KV +G   A A +  +  PA     S +PA  P ASDGT++DQGIAYVLMLLA
Sbjct: 1   MAIIGSSKVLFGFFAAFALIFPIFLPAVQGQESFAPAPAP-ASDGTTIDQGIAYVLMLLA 60

Query: 113 LLLTYIIHLAELPISL 129
           L +TY+IH A++P  +
Sbjct: 61  LAITYLIHAADVPFGV 75

BLAST of CmaCh02G014010 vs. NCBI nr
Match: gi|703131893|ref|XP_010104993.1| (hypothetical protein L484_012077 [Morus notabilis])

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1

Query: 56  VAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLL 115
           +A  KV  GV   +A VL++ FPA+ A  + +PA  P  SDGTS+DQGIAYVLML+AL+L
Sbjct: 1   MAISKVLVGVFAVIALVLSVSFPAAMAQAT-APAPAP-TSDGTSIDQGIAYVLMLVALVL 60

Query: 116 TYIIHLAELPIS 128
           TY+IH A +  S
Sbjct: 61  TYLIHAANISYS 70

BLAST of CmaCh02G014010 vs. NCBI nr
Match: gi|698532993|ref|XP_009763316.1| (PREDICTED: arabinogalactan peptide 22-like [Nicotiana sylvestris])

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query: 53  MEVVAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 112
           M ++   KV +G   A A + ++  P      S +PA  P ASDGT++DQGIAYVLMLLA
Sbjct: 1   MAIIGSSKVLFGFFAAFALIFSIFLPTVQGQESFAPAPAP-ASDGTTIDQGIAYVLMLLA 60

Query: 113 LLLTYIIHLAELPISL 129
           L +TY+IH A++P  +
Sbjct: 61  LAVTYLIHAADVPFGV 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGP20_ARATH5.6e-0657.14Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KK44_CUCSA3.4e-1066.23Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151510 PE=4 SV=1[more]
W9RQA8_9ROSA3.0e-0654.17Uncharacterized protein OS=Morus notabilis GN=L484_012077 PE=4 SV=1[more]
A0A124SBV6_CYNCS3.9e-0650.00Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006148 PE=4 ... [more]
A0A118JTN1_CYNCS3.9e-0657.89Arabinogalactan peptide, AGP OS=Cynara cardunculus var. scolymus GN=Ccrd_007988 ... [more]
A0A0V0H965_SOLCH3.9e-0653.03Putative arabinogalactan peptide 22-like OS=Solanum chacoense PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G24105.11.9e-0755.17 arabinogalactan protein 41[more]
AT3G61640.13.2e-0757.14 arabinogalactan protein 20[more]
AT5G53250.12.1e-0649.23 arabinogalactan protein 22[more]
AT2G46330.12.7e-0656.86 arabinogalactan protein 16[more]
Match NameE-valueIdentityDescription
gi|659074005|ref|XP_008437371.1|4.9e-1064.94PREDICTED: arabinogalactan peptide 22-like [Cucumis melo][more]
gi|449452418|ref|XP_004143956.1|4.9e-1066.23PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus][more]
gi|697188027|ref|XP_009603048.1|1.9e-0647.37PREDICTED: arabinogalactan peptide 22-like [Nicotiana tomentosiformis][more]
gi|703131893|ref|XP_010104993.1|4.3e-0654.17hypothetical protein L484_012077 [Morus notabilis][more]
gi|698532993|ref|XP_009763316.1|4.3e-0646.05PREDICTED: arabinogalactan peptide 22-like [Nicotiana sylvestris][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G014010.1CmaCh02G014010.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 87..120
score: 1.1
NoneNo IPR availablePANTHERPTHR33374FAMILY NOT NAMEDcoord: 55..120
score: 5.2

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G014010Csa5G151510Cucumber (Chinese Long) v2cmacuB608
CmaCh02G014010CSPI05G04790Wild cucumber (PI 183967)cmacpiB614
CmaCh02G014010Carg21266Silver-seed gourdcarcmaB0508
CmaCh02G014010Carg02570Silver-seed gourdcarcmaB1268
The following gene(s) are paralogous to this gene:

None