Carg02570 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02570
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Arabinogalactan peptide-like protein
Location	Cucurbita_argyrosperma_scaffold_009 : 681565 .. 683314 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCTGGATTGGTTGAAAGCCACACCGCCATTGCAACGCCGTGGAGAGCAGCCATCGTCGTCTTCGGGATTGAGTAATTCAGTTTGTGTGTTAGTCTCTCTCTCCCGCGCCTCTCCGGAGAGGGAGATTAATTGTCGTCGAACACTATATAACAACAATAACAATGGAGGTCGTTGCTTATAATAAGGTCCCTTATGGCGTTTTAGTCGCTGTTGCTTTTGCTTTGGCTATGCTTTTCCCTGCCTCCGCCGCTGATCCTTCTTTGTCTCCAGCCCAACCTCCCATTGCTAGCGATGGTTTGTTCATTTCATTATTATTGAGAAAAAAAAAAAAAAAAATAAGAACATGTTCGTAATTAATTTCTATGTTTGGAAATTTGCAGGGACGAGCTTAGACCAAGGAATAGCGTACGTGCTGATGTTGTTGGCGTTGCTGCTAACTTACATTATTCATTTAGCAGAGCTTCCAATCAGTTTGTAAAATTAGTGCACAAAATAATTAAATTCAATCCCGAGAGCTCCAATGTAAAAAGTGGGGTTTTTGTTTTCTTTTCCTTCGCAGTTTAATGTCAATTGATGCAATGATCATTTCTTTTTTACCTCAATGCTCCAATGTTGAGTGGTTGGATGATGTTTTTCTAAAGAGTAAAAAAGCTTCCCAGAATAATGTATTGCTCACAAACAACAGAGATCGATCTGCTAGAAACTTCAAAGATTCCCAAAATAATTAGACAAATCTTTCAACTTCAACAAAATTTATTGGATTTGTTTGGAACTAACTCCATGAAGGAATTCTGTCATCATTTTGATAGAATTCAGTCCCGAATCAGACAATGTCTCCTACAAATGGAAACTTCAATTGCTTCCTTCAAGTGCTCTTCTTACCACTTCGTTTTGCTCGTTCTTCATCAGCCAACGAGAACTTTTTCACTTTCTGGCGAAGGATGAAGCAACAAATTCAAGCAAAAGAAAAGAACGGTTACATTTTGTTGCTTATACAGCAAATATGAATATGAATGTGAAGCAAATGTTAAGCGTTTAGAATAGTGAATCTATGTGCCTGGAATGTTGAGGACAAAAAGTTTGAGCCAATCCGAACAAATAATCAAATCAAGAAACCACGCGTTTGAGTATTTTAATCAGCGTTGCAGTGAGAAGTGAATTACAATTACCTGCCATATCCTAAATTGTGAAATCAAAGATCATTCCAGGACACTAGATTGTCATTTCAAGCATAATCCTCGATTTCACGAATCCTAATCTAAACCTAGAAAAATAAATTATCTAATATCAATCACGATTCGGAGAATAACAATCGAACTCCATGGAATAAAAAAATCAATCGATACTCAGCAAATCCTATTCAGAGTGCAAGGCGATCTAATTCGAAAATTCCGAAAAGAAACAAAGCATCAATTGAGTTCATCAAATATCGAAATAAACACGAACAGTTAGGGCAAAAATTGAACAGAGAAAACGAATACCTTACTGAGAACGCATTCTCGCAAAGAATGAAGGAGACGGTAGCATTTCTCTTGATCGAACGGAGACTCCGTAACGCAATTGAGCAAATCGAGAGCTTCTTGAGCGCAAACCGGCTGAGCTTGAGCATCATCCATGGCGGAACAGTAAGTGGATTTCAAAACCAGTGAGCTAGCTGCAGCAGCTTGTTTATGAAGGAATCGCAAAAACAATGGGAAGGCGCATTTGGATTAAGAAAAAAAAAAGGAAACCAAAGCTGCGGCTAAAGG

mRNA sequence

ACCCTGGATTGGTTGAAAGCCACACCGCCATTGCAACGCCGTGGAGAGCAGCCATCGTCGTCTTCGGGATTGAGTAATTCAGTTTGTGTGTTAGTCTCTCTCTCCCGCGCCTCTCCGGAGAGGGAGATTAATTGTCGTCGAACACTATATAACAACAATAACAATGGAGGTCGTTGCTTATAATAAGGTCCCTTATGGCGTTTTAGTCGCTGTTGCTTTTGCTTTGGCTATGCTTTTCCCTGCCTCCGCCGCTGATCCTTCTTTGTCTCCAGCCCAACCTCCCATTGCTAGCGATGGGACGAGCTTAGACCAAGGAATAGCGTACGTGCTGATGTTGTTGGCGTTGCTGCTAACTTACATTATTCATTTAGCAGAGCTTCCAATCAGTTTGTAAAATTAGTGCACAAAATAATTAAATTCAATCCCGAGAGCTCCAATGTAAAAAGTGGGGTTTTTGTTTTCTTTTCCTTCGCAGTTTAATGTCAATTGATGCAATGATCATTTCTTTTTTACCTCAATGCTCCAATGTTGAGTGGTTGGATGATGTTTTTCTAAAGAGTAAAAAAGCTTCCCAGAATAATGTATTGCTCACAAACAACAGAGATCGATCTGCTAGAAACTTCAAAGATTCCCAAAATAATTAGACAAATCTTTCAACTTCAACAAAATTTATTGGATTTGTTTGGAACTAACTCCATGAAGGAATTCTGTCATCATTTTGATAGAATTCAGTCCCGAATCAGACAATGTCTCCTACAAATGGAAACTTCAATTGCTTCCTTCAAGTGCTCTTCTTACCACTTCGTTTTGCTCGTTCTTCATCAGCCAACGAGAACTTTTTCACTTTCTGGCGAAGGATGAAGCAACAAATTCAAGCAAAAGAAAAGAACGGTTACATTTTGTTGCTTATACAGCAAATATGAATATGAATGTGAAGCAAATGTTAAGCGTTTAGAATAGTGAATCTATGTGCCTGGAATGTTGAGGACAAAAAGTTTGAGCCAATCCGAACAAATAATCAAATCAAGAAACCACGCGTTTGAGTATTTTAATCAGCGTTGCAGTGAGAAGTGAATTACAATTACCTGCCATATCCTAAATTGTGAAATCAAAGATCATTCCAGGACACTAGATTGTCATTTCAAGCATAATCCTCGATTTCACGAATCCTAATCTAAACCTAGAAAAATAAATTATCTAATATCAATCACGATTCGGAGAATAACAATCGAACTCCATGGAATAAAAAAATCAATCGATACTCAGCAAATCCTATTCAGAGTGCAAGGCGATCTAATTCGAAAATTCCGAAAAGAAACAAAGCATCAATTGAGTTCATCAAATATCGAAATAAACACGAACAGTTAGGGCAAAAATTGAACAGAGAAAACGAATACCTTACTGAGAACGCATTCTCGCAAAGAATGAAGGAGACGGTAGCATTTCTCTTGATCGAACGGAGACTCCGTAACGCAATTGAGCAAATCGAGAGCTTCTTGAGCGCAAACCGGCTGAGCTTGAGCATCATCCATGGCGGAACAGTAAGTGGATTTCAAAACCAGTGAGCTAGCTGCAGCAGCTTGTTTATGAAGGAATCGCAAAAACAATGGGAAGGCGCATTTGGATTAAGAAAAAAAAAAGGAAACCAAAGCTGCGGCTAAAGG

Coding sequence (CDS)

ATGGAGGTCGTTGCTTATAATAAGGTCCCTTATGGCGTTTTAGTCGCTGTTGCTTTTGCTTTGGCTATGCTTTTCCCTGCCTCCGCCGCTGATCCTTCTTTGTCTCCAGCCCAACCTCCCATTGCTAGCGATGGGACGAGCTTAGACCAAGGAATAGCGTACGTGCTGATGTTGTTGGCGTTGCTGCTAACTTACATTATTCATTTAGCAGAGCTTCCAATCAGTTTGTAA

Protein sequence

MEVVAYNKVPYGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

Homology

[Close]

BLAST of Carg02570 vs. NCBI nr
Match: XP_023532560.1 (arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MEVVAYNKVPYGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60
          MEVVAYNKVPYGVLVAVAF LAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA
Sbjct: 1  MEVVAYNKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60

Query: 61 LLLTYIIHLAELPISL 77
          LLLTYIIHLAELPISL
Sbjct: 61 LLLTYIIHLAELPISL 76

[Close]

BLAST of Carg02570 vs. NCBI nr
Match: XP_022996281.1 (arabinogalactan peptide 22-like [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MEVVAYNKVPYGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60
          MEVVAY KVPYGVLVAVAF LAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA
Sbjct: 1  MEVVAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60

Query: 61 LLLTYIIHLAELPISL 77
          LLLTYIIHLAELPISL
Sbjct: 61 LLLTYIIHLAELPISL 76

[Close]

BLAST of Carg02570 vs. NCBI nr
Match: XP_022146078.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-10
Identity = 48/79 (60.76%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MEVVAYNKVPYGVL--VAVAFALAMLFP--ASAADPSLSPAQPPIASDGTSLDQGIAYVL 60
          M V   N +P G+L  VAVAF L    P  A A   S+SPAQP   SDGTS+DQGIAY L
Sbjct: 1  MVVAVRNYLPLGILVAVAVAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYAL 60

Query: 61 MLLALLLTYIIHLAELPIS 76
          MLLAL+LTYIIH A+L IS
Sbjct: 61 MLLALVLTYIIHSADLSIS 79

[Close]

BLAST of Carg02570 vs. NCBI nr
Match: XP_004143956.1 (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus] >KGN50035.1 hypothetical protein Csa_5G151510 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 1  MEVVAYNKVPY-GVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLL 60
          M VVA  KVP+ G+L  VA  L  L  +SA   SLSPAQPP   DGTS+DQGIAYVLMLL
Sbjct: 1  MAVVAC-KVPFGGILFVVALVLTRL--SSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLL 60

Query: 61 ALLLTYIIHLAELPISL 77
          AL+LTYIIH A+L +SL
Sbjct: 61 ALVLTYIIHSADLYVSL 74

[Close]

BLAST of Carg02570 vs. NCBI nr
Match: XP_008437371.1 (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  MEVVAYNKVPY-GVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLL 60
          M VVA  K+P+ G+L  VA  L  L PA A   SLSPAQPP  SDGTS+DQGIAY LMLL
Sbjct: 1  MAVVAC-KIPFSGILFVVALVLTRLSPACA--QSLSPAQPPATSDGTSIDQGIAYALMLL 60

Query: 61 ALLLTYIIHLAELPISL 77
          AL+LTYIIH A+  +SL
Sbjct: 61 ALVLTYIIHSADRYVSL 74

[Close]

BLAST of Carg02570 vs. TAIR10
Match: AT5G24105.1 (arabinogalactan protein 41)

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-07
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 11 YGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 69
          +GV   V+   A+L P + A  S +PA  P  SDGT++DQGIAYVLML+AL+LTY+IH
Sbjct: 8  FGVSTIVSIIFAILLPMAHAQ-SAAPAPAP-TSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Carg02570 vs. TAIR10
Match: AT3G61640.1 (arabinogalactan protein 20)

HSP 1 Score: 50.8 bits (120), Expect = 4.2e-07
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 13 VLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 69
          V+   AF  A++ P + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Sbjct: 9  VIALFAFVFAVISPFAGAQ-SLAPAPSP-TSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Carg02570 vs. TAIR10
Match: AT2G46330.1 (arabinogalactan protein 16)

HSP 1 Score: 47.4 bits (111), Expect = 4.7e-06
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 18 AFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 69
          +F  A++   + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Sbjct: 14 SFVFAVILSLAGAQ-SLAPAPAP-TSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Carg02570 vs. TAIR10
Match: AT5G53250.1 (arabinogalactan protein 22)

HSP 1 Score: 40.0 bits (92), Expect = 7.4e-04
Identity = 27/61 (44.26%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 8  KVPYGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYII 67
          K P  +L        +L P   A            SDGTS+DQGIAYVLM++AL LTY I
Sbjct: 5  KFPLEILAVFVIISVILLP--IAQXXXXXXXXXXXSDGTSIDQGIAYVLMMVALALTYFI 63

Query: 68 H 69
          H
Sbjct: 65 H 63

[Close]

BLAST of Carg02570 vs. Swiss-Prot
Match: sp|Q8L9T8|AGP41_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.8e-06
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 11 YGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 69
          +GV   V+   A+L P + A  S +PA  P  SDGT++DQGIAYVLML+AL+LTY+IH
Sbjct: 8  FGVSTIVSIIFAILLPMAHAQ-SAAPAPAP-TSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Carg02570 vs. Swiss-Prot
Match: sp|Q9M373|AGP20_ARATH (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.6e-06
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 13 VLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 69
          V+   AF  A++ P + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Sbjct: 9  VIALFAFVFAVISPFAGAQ-SLAPAPSP-TSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Carg02570 vs. Swiss-Prot
Match: sp|O82337|AGP16_ARATH (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 8.4e-05
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 18 AFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH 69
          +F  A++   + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Sbjct: 14 SFVFAVILSLAGAQ-SLAPAPAP-TSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Carg02570 vs. TrEMBL
Match: tr|A0A0A0KK44|A0A0A0KK44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.4e-10
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 1  MEVVAYNKVPY-GVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLL 60
          M VVA  KVP+ G+L  VA  L  L  +SA   SLSPAQPP   DGTS+DQGIAYVLMLL
Sbjct: 1  MAVVAC-KVPFGGILFVVALVLTRL--SSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLL 60

Query: 61 ALLLTYIIHLAELPISL 77
          AL+LTYIIH A+L +SL
Sbjct: 61 ALVLTYIIHSADLYVSL 74

[Close]

BLAST of Carg02570 vs. TrEMBL
Match: tr|A0A1S3ATI9|A0A1S3ATI9_CUCME (arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  MEVVAYNKVPY-GVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLL 60
          M VVA  K+P+ G+L  VA  L  L PA A   SLSPAQPP  SDGTS+DQGIAY LMLL
Sbjct: 1  MAVVAC-KIPFSGILFVVALVLTRLSPACA--QSLSPAQPPATSDGTSIDQGIAYALMLL 60

Query: 61 ALLLTYIIHLAELPISL 77
          AL+LTYIIH A+  +SL
Sbjct: 61 ALVLTYIIHSADRYVSL 74

[Close]

BLAST of Carg02570 vs. TrEMBL
Match: tr|A0A1S3ZMZ3|A0A1S3ZMZ3_TOBAC (arabinogalactan peptide 22-like OS=Nicotiana tabacum OX=4097 GN=LOC107788579 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-07
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1  MEVVAYNKVPYGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60
          M ++  +KV +G   A A   ++  PA     S +PA  P ASDGT++DQGIAYVLMLLA
Sbjct: 1  MAIIGSSKVLFGFFAAFALIFSIFLPAVQGQESFAPAPAP-ASDGTTIDQGIAYVLMLLA 60

Query: 61 LLLTYIIHLAELPISL 77
          L +TY+IH A++P  +
Sbjct: 61 LAITYLIHAADVPFGV 75

[Close]

BLAST of Carg02570 vs. TrEMBL
Match: tr|A0A2J6KZN9|A0A2J6KZN9_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X11901 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-07
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 4  VAYNKVPYGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLL 63
          +A +K+P GV+ A A   A+ FPA+     L+PA  P  SDGTS+DQGIAY+LML+AL+L
Sbjct: 1  MAASKIPSGVVSAFALIFAIAFPAAVHGQPLAPAPAP-TSDGTSIDQGIAYLLMLVALVL 60

Query: 64 TYIIHLAELPISL 77
          TY++H  + P ++
Sbjct: 61 TYVMHNLDSPFTV 72

[Close]

BLAST of Carg02570 vs. TrEMBL
Match: tr|A0A1S3YL11|A0A1S3YL11_TOBAC (arabinogalactan peptide 22-like OS=Nicotiana tabacum OX=4097 GN=LOC107777421 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 1  MEVVAYNKVPYGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60
          M ++  +KV +G   A A   ++  P      S +PA  P ASDGT++DQGIAYVLMLLA
Sbjct: 1  MAIIGSSKVLFGFFAAFALIFSIFLPTVQGQESFAPAPAP-ASDGTTIDQGIAYVLMLLA 60

Query: 61 LLLTYIIHLAELPISL 77
          L +TY+IH A++P  +
Sbjct: 61 LAVTYLIHAADVPFGV 75

The following BLAST results are available for this feature:

BLAST of Carg02570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532560.1	1.2e-28	98.68	arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996281.1	1.4e-27	97.37	arabinogalactan peptide 22-like [Cucurbita maxima]	[more]
XP_022146078.1	7.5e-10	60.76	arabinogalactan peptide 22-like [Momordica charantia]	[more]
XP_004143956.1	1.3e-09	64.94	PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus] >KGN50035.1 hypothe...	[more]
XP_008437371.1	1.7e-09	63.64	PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]	[more]

BLAST of Carg02570 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24105.1	3.2e-07	55.17	arabinogalactan protein 41	[more]
AT3G61640.1	4.2e-07	55.36	arabinogalactan protein 20	[more]
AT2G46330.1	4.7e-06	54.90	arabinogalactan protein 16	[more]
AT5G53250.1	7.4e-04	44.26	arabinogalactan protein 22	[more]

BLAST of Carg02570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9T8\|AGP41_ARATH	5.8e-06	55.17	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
sp\|Q9M373\|AGP20_ARATH	7.6e-06	55.36	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
sp\|O82337\|AGP16_ARATH	8.4e-05	54.90	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]

BLAST of Carg02570 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KK44\|A0A0A0KK44_CUCSA	8.4e-10	64.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1	[more]
tr\|A0A1S3ATI9\|A0A1S3ATI9_CUCME	1.1e-09	63.64	arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=...	[more]
tr\|A0A1S3ZMZ3\|A0A1S3ZMZ3_TOBAC	3.9e-07	47.37	arabinogalactan peptide 22-like OS=Nicotiana tabacum OX=4097 GN=LOC107788579 PE=...	[more]
tr\|A0A2J6KZN9\|A0A2J6KZN9_LACSA	8.7e-07	49.32	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X11901 PE=4 SV=1	[more]
tr\|A0A1S3YL11\|A0A1S3YL11_TOBAC	1.5e-06	46.05	arabinogalactan peptide 22-like OS=Nicotiana tabacum OX=4097 GN=LOC107777421 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009424	AGP16/20/22/41

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02570-RA	Carg02570-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 35..68 e-value: 3.7E-15 score: 55.4
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	FAMILY NOT NAMED	coord: 5..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02570	Cla011387	Watermelon (97103) v1	carwmB0925
Carg02570	Csa5G151510	Cucumber (Chinese Long) v2	carcuB0939
Carg02570	ClCG01G002070	Watermelon (Charleston Gray)	carwcgB0898
Carg02570	CSPI05G04790	Wild cucumber (PI 183967)	carcpiB0961
Carg02570	CmaCh02G014010	Cucurbita maxima (Rimu)	carcmaB1268
Carg02570	CmaCh15G012660	Cucurbita maxima (Rimu)	carcmaB1261
Carg02570	CmoCh02G014340	Cucurbita moschata (Rifu)	carcmoB1237
Carg02570	CmoCh15G013360	Cucurbita moschata (Rifu)	carcmoB1230
Carg02570	Lsi09G001900	Bottle gourd (USVL1VR-Ls)	carlsiB836
Carg02570	Cp4.1LG13g01080	Cucurbita pepo (Zucchini)	carcpeB1271
Carg02570	Cp4.1LG05g02980	Cucurbita pepo (Zucchini)	carcpeB1282
Carg02570	CsGy5G002090	Cucumber (Gy14) v2	carcgybB0912
Carg02570	MELO3C034006.2	Melon (DHL92) v3.6.1	carmedB0910
Carg02570	CsaV3_5G002200	Cucumber (Chinese Long) v3	carcucB0963

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02570	Carg21266	Silver-seed gourd	carcarB386

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02570	Silver-seed gourd	carcarB448
Carg02570	Cucumber (Gy14) v1	carcgyB1043
Carg02570	Melon (DHL92) v3.5.1	carmeB0903
Carg02570	Watermelon (97103) v1	carwmB0922
Carg02570	Watermelon (97103) v2	carwmbB0963
Carg02570	Wax gourd	carwgoB1062
Carg02570	Wax gourd	carwgoB1068