CmoCh16G006090 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G006090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionArabinogalactan peptide 22
LocationCmo_Chr16 : 2974820 .. 2976379 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGCCTCTGTACCGTTCAGAGATTTCTCTTAATCGTCTTCTCCATTTCGCCCTTCGAGGAGGGAAAGGGAGATTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCCATTGAAGAAGAAGGCACTGAAAGCCTCTCGATCTGAGAGACGCATCGCAGAGAGAGATCGAGCCTCGGTACTACATTTCTTGCGATTCATCGCCTGAAGAAAGGAGAGGAGAAAATCACAGCACGATTCGGATTCGGAGTCAAATGGCGGTTTCCAGGACGTCTTTTGGATTTGTGGCTGCCGCTGCGCTCATCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGTTAGTTCTCTTCTTAATTTCTATTTCTTTAAGTTTTGTTTTGTATTTTTGTTCTAGATCTGTGTGGACTGTTGATCTCTGGCTTGAAATTAGTTTTGTTTGTTTATTCTTTGTTTCCGGATTATTTTGAGAGTTTCAGTTTCTGAGTTACCAAAACATTGTTTCGGTTTCCGTTTCTTCTTTGTTTCCGGATTATTTTGAGAGTTTCAGTTTCTGAGTTACCAAAACATCGTTTCGGTTTCCGTTTCTTGGTGAATTGTGATTAAAGATATTAAGCGCAAATCTTCACTTTTTTTCCCCTTTAGTTTTGATTGTTTGTTCAAGCCTTGGTGGATCTATTTTCCTACACGTATGTGTATTCTCAATTTTGCGAGAGTTCATTAGCATCAATTTGTGGACCAAATGTTAGAAATGACAAATAATACAGAAGCTATTTTCTTGTATTCGTAACAACGGCATAAAGTTATCTTATAGTTTCTATAAACTATTAATTTGCGAGTGTAATTAAACCTATTGCCATGATTATGAAAAGTAATTCTGTTTGCTATTTGGTTGGCCTGACTACTATTACGTTACCTTTGAGAACAAAGGTGTTTGGTCTTGATGTCTTATCCTCAGAAATTCATTTTAAATAGTTCTTTGAAATGCAAAATCCTAAGGAATTAGGGTTGAAATTCATAGATTTCTTAGTGAACTTAATTGGTATCTTTAAAACGTCAATGCACAGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAAAAGACTGTATCAAGCATTTGGAGAGAACCTCTTTTGATCAAAAGGGAAGGGAATTTAGTTAGAAATGCAAAAGTGGGGTTTGAGGGGACTGGACTTTTTTTCTTATTTTTGCATATTGTAGTTCCTTTGGAACCTCTTTTGATCAAAGAGGAAGAGAATTTAGTTAGAAATGCAAATGGGTCTTGAGGGATTTGGATTCTTTTGCATATTGTAGCAGTTCCTTTGGTGTTTCTGTTTTGTTCTTATTTATAACGATGAAAGTCAGTTGGTGTGGTCTTGTATTGCTGTGTACAGTGTCCTGAGTTTGAATGCGACTCCTGGCTCCCTTTTCATGTTTCTTCTCCTTCTTTTA

mRNA sequence

ACTGCCTCTGTACCGTTCAGAGATTTCTCTTAATCGTCTTCTCCATTTCGCCCTTCGAGGAGGGAAAGGGAGATTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCCATTGAAGAAGAAGGCACTGAAAGCCTCTCGATCTGAGAGACGCATCGCAGAGAGAGATCGAGCCTCGGTACTACATTTCTTGCGATTCATCGCCTGAAGAAAGGAGAGGAGAAAATCACAGCACGATTCGGATTCGGAGTCAAATGGCGGTTTCCAGGACGTCTTTTGGATTTGTGGCTGCCGCTGCGCTCATCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAAAAGACTGTATCAAGCATTTGGAGAGAACCTCTTTTGATCAAAAGGGAAGGGAATTTAGTTAGAAATGCAAAAGTGGGGTTTGAGGGGACTGGACTTTTTTTCTTATTTTTGCATATTGTAGTTCCTTTGGAACCTCTTTTGATCAAAGAGGAAGAGAATTTAGTTAGAAATGCAAATGGGTCTTGAGGGATTTGGATTCTTTTGCATATTGTAGCAGTTCCTTTGGTGTTTCTGTTTTGTTCTTATTTATAACGATGAAAGTCAGTTGGTGTGGTCTTGTATTGCTGTGTACAGTGTCCTGAGTTTGAATGCGACTCCTGGCTCCCTTTTCATGTTTCTTCTCCTTCTTTTA

Coding sequence (CDS)

ATGGCGGTTTCCAGGACGTCTTTTGGATTTGTGGCTGCCGCTGCGCTCATCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAA
Homology
[Close]
BLAST of CmoCh16G006090 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.7e-16
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 4  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S   +A  A +FA+  P A  QSLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

[Close]
BLAST of CmoCh16G006090 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-15
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1 

Query: 4  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S    A  + +FA+ L +A  QSLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

[Close]
BLAST of CmoCh16G006090 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-12
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MA  +     +A   +I  I LP+AQ  S +PAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

[Close]
BLAST of CmoCh16G006090 vs. TrEMBL
Match: A0A0A0KZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.8e-23
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR+SFG +AA ALIFAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADL 68
          LIHNADL
Sbjct: 61 LIHNADL 67

[Close]
BLAST of CmoCh16G006090 vs. TrEMBL
Match: A0A067JZA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.0e-17
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 1  MAVSRTSFGFVA-AAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALT 60
          MAVSR SFG +A A AL+FAI LP  Q QS APAP+PTSDGTSIDQGIAYVLMLVAL LT
Sbjct: 1  MAVSRVSFGVLAFAVALVFAIALPSVQAQSFAPAPSPTSDGTSIDQGIAYVLMLVALVLT 60

Query: 61 YLIHNAD 67
          YLIH AD
Sbjct: 61 YLIHAAD 67

[Close]
BLAST of CmoCh16G006090 vs. TrEMBL
Match: A0A087GCU3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G416500 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.5e-15
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          M+VSR  FG +   +++F+I +P+AQ QS APAPAPTSDGT+IDQGIAYVLMLVAL LTY
Sbjct: 1  MSVSRVFFGIITFISIVFSILMPMAQAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]
BLAST of CmoCh16G006090 vs. TrEMBL
Match: A9PA79_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13640g PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.5e-15
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 11 VAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS 70
          V A  ++FAI LP+AQ Q  APAPAPTSDGTSIDQGIAYVLM+VALALTYLIH ADLS+S
Sbjct: 11 VVALLVVFAIVLPIAQAQ--APAPAPTSDGTSIDQGIAYVLMMVALALTYLIHAADLSHS 69

Query: 71 F 72
          F
Sbjct: 71 F 69

[Close]
BLAST of CmoCh16G006090 vs. TrEMBL
Match: W9RQA8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012077 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.8e-15
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MA+S+   G  A  AL+ ++  P A  Q+ APAPAPTSDGTSIDQGIAYVLMLVAL LTY
Sbjct: 1  MAISKVLVGVFAVIALVLSVSFPAAMAQATAPAPAPTSDGTSIDQGIAYVLMLVALVLTY 60

Query: 61 LIHNADLSNSF 72
          LIH A++S SF
Sbjct: 61 LIHAANISYSF 71

[Close]
BLAST of CmoCh16G006090 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 83.6 bits (205), Expect = 5.5e-17
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 4  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S   +A  A +FA+  P A  QSLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

[Close]
BLAST of CmoCh16G006090 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 83.2 bits (204), Expect = 7.2e-17
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          M+ SR  FG     ++IFAI LP+A  QS APAPAPTSDGT+IDQGIAYVLMLVAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]
BLAST of CmoCh16G006090 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-16
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1 

Query: 4  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S    A  + +FA+ L +A  QSLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

[Close]
BLAST of CmoCh16G006090 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-14
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MA  +     +A   +I  I LP+AQ  S +PAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

[Close]
BLAST of CmoCh16G006090 vs. NCBI nr
Match: gi|659102138|ref|XP_008451971.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 8.2e-23
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR+SF  +AA ALIFAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFELLAATALIFAIFLPVAHPLSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADLSNS 71
          LIHNADLSN+
Sbjct: 61 LIHNADLSNN 70

[Close]
BLAST of CmoCh16G006090 vs. NCBI nr
Match: gi|449464078|ref|XP_004149756.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR+SFG +AA ALIFAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADL 68
          LIHNADL
Sbjct: 61 LIHNADL 67

[Close]
BLAST of CmoCh16G006090 vs. NCBI nr
Match: gi|720033434|ref|XP_010266430.1| (PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFG VA  ALIFA+ LP  Q QS+APAPAPTSDGTSIDQGIAYVLMLVAL LTY
Sbjct: 1  MAVSRVSFGVVAIVALIFAVALPAVQAQSVAPAPAPTSDGTSIDQGIAYVLMLVALVLTY 60

Query: 61 LIHNADLSN 70
          LIH  D S+
Sbjct: 61 LIHPLDASS 69

[Close]
BLAST of CmoCh16G006090 vs. NCBI nr
Match: gi|720017497|ref|XP_010261486.1| (PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFG +A  ALIF+I  P  Q QSLAPAPAPTSDGTSIDQG+AYVLMLVAL LTY
Sbjct: 1  MAVSRVSFGVMAIVALIFSIAFPAVQAQSLAPAPAPTSDGTSIDQGVAYVLMLVALVLTY 60

Query: 61 LIHNADLSN 70
          LIH  D S+
Sbjct: 61 LIHPLDASS 69

[Close]
BLAST of CmoCh16G006090 vs. NCBI nr
Match: gi|802735165|ref|XP_012086771.1| (PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 1  MAVSRTSFGFVA-AAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALT 60
          MAVSR SFG +A A AL+FAI LP  Q QS APAP+PTSDGTSIDQGIAYVLMLVAL LT
Sbjct: 1  MAVSRVSFGVLAFAVALVFAIALPSVQAQSFAPAPSPTSDGTSIDQGIAYVLMLVALVLT 60

Query: 61 YLIHNAD 67
          YLIH AD
Sbjct: 61 YLIHAAD 67

The following BLAST results are available for this feature:
BLAST of CmoCh16G006090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP20_ARATH9.7e-1665.67Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
AGP16_ARATH4.8e-1564.71Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1[more]
AGP22_ARATH1.3e-1263.49Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1[more]
BLAST of CmoCh16G006090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZS8_CUCSA9.8e-2389.55Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1[more]
A0A067JZA6_JATCU8.0e-1779.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1[more]
A0A087GCU3_ARAAL7.5e-1569.84Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G416500 PE=4 SV=1[more]
A9PA79_POPTR7.5e-1578.69Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13640g PE=2 SV=1[more]
W9RQA8_9ROSA9.8e-1564.79Uncharacterized protein OS=Morus notabilis GN=L484_012077 PE=4 SV=1[more]
BLAST of CmoCh16G006090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61640.15.5e-1765.67 arabinogalactan protein 20[more]
AT5G24105.17.2e-1771.43 arabinogalactan protein 41[more]
AT2G46330.12.7e-1664.71 arabinogalactan protein 16[more]
AT5G53250.17.4e-1463.49 arabinogalactan protein 22[more]
BLAST of CmoCh16G006090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102138|ref|XP_008451971.1|8.2e-2387.14PREDICTED: arabinogalactan peptide 22-like [Cucumis melo][more]
gi|449464078|ref|XP_004149756.1|1.4e-2289.55PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus][more]
gi|720033434|ref|XP_010266430.1|2.1e-1878.26PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera][more]
gi|720017497|ref|XP_010261486.1|1.4e-1775.36PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera][more]
gi|802735165|ref|XP_012086771.1|1.1e-1679.10PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006811 ion transport
biological_process GO:0050896 response to stimulus
biological_process GO:0044763 single-organism cellular process
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G006090.1CmoCh16G006090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 31..63
score: 1.8
NoneNo IPR availablePANTHERPTHR33374FAMILY NOT NAMEDcoord: 1..69
score: 6.3
NoneNo IPR availablePANTHERPTHR33374:SF2ARABINOGALACTAN PEPTIDE 22-RELATEDcoord: 1..69
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G006090Cucsa.107210Cucumber (Gy14) v1cgycmoB0244
CmoCh16G006090CmaCh16G005600Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G006090CmaCh04G007060Cucurbita maxima (Rimu)cmacmoB700
CmoCh16G006090Cla010927Watermelon (97103) v1cmowmB304
CmoCh16G006090Csa4G051380Cucumber (Chinese Long) v2cmocuB325
CmoCh16G006090Csa5G151510Cucumber (Chinese Long) v2cmocuB330
CmoCh16G006090ClCG07G014860Watermelon (Charleston Gray)cmowcgB296
CmoCh16G006090CSPI04G06190Wild cucumber (PI 183967)cmocpiB332
CmoCh16G006090CSPI05G04790Wild cucumber (PI 183967)cmocpiB338
CmoCh16G006090Lsi07G006990Bottle gourd (USVL1VR-Ls)cmolsiB314
CmoCh16G006090Cp4.1LG14g02440Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G006090Cp4.1LG01g00370Cucurbita pepo (Zucchini)cmocpeB313
CmoCh16G006090MELO3C032818.2Melon (DHL92) v3.6.1cmomedB336
CmoCh16G006090CsaV3_4G006390Cucumber (Chinese Long) v3cmocucB0388
CmoCh16G006090CsaV3_5G002200Cucumber (Chinese Long) v3cmocucB0400
CmoCh16G006090Cla97C07G141780Watermelon (97103) v2cmowmbB338
CmoCh16G006090Bhi01G002276Wax gourdcmowgoB0433
CmoCh16G006090CsGy4G006110Cucumber (Gy14) v2cgybcmoB467
CmoCh16G006090Carg22236Silver-seed gourdcarcmoB0803
CmoCh16G006090Carg21266Silver-seed gourdcarcmoB0489
CmoCh16G006090Carg13053Silver-seed gourdcarcmoB0056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G006090Cucumber (Gy14) v2cgybcmoB309
CmoCh16G006090Cucumber (Gy14) v2cgybcmoB596
CmoCh16G006090Melon (DHL92) v3.6.1cmomedB314
CmoCh16G006090Cucumber (Chinese Long) v3cmocucB0403
CmoCh16G006090Watermelon (97103) v2cmowmbB311
CmoCh16G006090Watermelon (97103) v2cmowmbB330
CmoCh16G006090Wax gourdcmowgoB0423
CmoCh16G006090Cucurbita moschata (Rifu)cmocmoB238
CmoCh16G006090Cucurbita moschata (Rifu)cmocmoB285
CmoCh16G006090Cucumber (Gy14) v1cgycmoB0825
CmoCh16G006090Cucurbita maxima (Rimu)cmacmoB290
CmoCh16G006090Melon (DHL92) v3.5.1cmomeB277
CmoCh16G006090Melon (DHL92) v3.5.1cmomeB294
CmoCh16G006090Watermelon (Charleston Gray)cmowcgB284
CmoCh16G006090Watermelon (97103) v1cmowmB313
CmoCh16G006090Bottle gourd (USVL1VR-Ls)cmolsiB288
CmoCh16G006090Bottle gourd (USVL1VR-Ls)cmolsiB310