Cp4.1LG14g02440 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g02440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionArabinogalactan peptide-like protein
LocationCp4.1LG14 : 2980307 .. 2981178 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTTCCAGGACGTCTTTTGGATTTGTTGCTGCGGCTGCGCTCATCTTTGCTATTTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGTTAGTTCTCTTCTTAATTTCTATTTCTCTAAGTTTTGTTTTGTATTTTTGTTCTAGATCTGTGTGGACTGTTGATCTCTGGCTTGAAATGAGTTTTGTTTGTTTATTCTTTGTTTCCGGATTATTTTGAGAGTTTCAGTTTCTGAGTTACCAAAACATTGTTTCGGTTTCCGTTTCTTGATGAATTGTGATTAAAGATATTAAGCGCAAATCTTCACTTCTTTTCCCCTTTAGTTTTGATTGTTTGTTCAAGCCTTGGTGGATCTATTTTCCTACACGTATTTGTATTCTCAATTTTGCGAGAGGTCATTGGCATCAATTTGTGGACCAAATGTTAGAAATGACAAATAATACAGAAGCTATTTTCTTGTATTCGTAACAACAGCATAAAGTTATCTTATAGTTTCTATAAACTATTAATTTGCGAGTGTAATTAAACCTATTGCCATGATTATGCAAAGTAATTCTGTTTGCTATTTGGTTGGCCTGACTACTATTACGTTACCTTTTAGAACAAAGGTGTTTGGTCTTGATGTCTTATCCTCAGAAGTTCATTTTAAATAGTTCTTTGAAATGCAAAATCCTAAGGAATTAGGGTTGAAATTCATAGATTTCTTAGTGAACTTAATTGGTATCTTTAAAACGTCATTTCACAGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAA

mRNA sequence

ATGGCGGTTTCCAGGACGTCTTTTGGATTTGTTGCTGCGGCTGCGCTCATCTTTGCTATTTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAA

Coding sequence (CDS)

ATGGCGGTTTCCAGGACGTCTTTTGGATTTGTTGCTGCGGCTGCGCTCATCTTTGCTATTTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAA

Protein sequence

MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
BLAST of Cp4.1LG14g02440 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.7e-16
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1

Query: 4  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S   +A  A +FA+  P A  QSLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

BLAST of Cp4.1LG14g02440 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-15
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1

Query: 4  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S    A  + +FA+ L +A  QSLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

BLAST of Cp4.1LG14g02440 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-12
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MA  +     +A   +I  I LP+AQ  S +PAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

BLAST of Cp4.1LG14g02440 vs. TrEMBL
Match: A0A0A0KZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.8e-23
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR+SFG +AA ALIFAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADL 68
          LIHNADL
Sbjct: 61 LIHNADL 67

BLAST of Cp4.1LG14g02440 vs. TrEMBL
Match: A0A067JZA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.0e-17
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1

Query: 1  MAVSRTSFGFVA-AAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALT 60
          MAVSR SFG +A A AL+FAI LP  Q QS APAP+PTSDGTSIDQGIAYVLMLVAL LT
Sbjct: 1  MAVSRVSFGVLAFAVALVFAIALPSVQAQSFAPAPSPTSDGTSIDQGIAYVLMLVALVLT 60

Query: 61 YLIHNAD 67
          YLIH AD
Sbjct: 61 YLIHAAD 67

BLAST of Cp4.1LG14g02440 vs. TrEMBL
Match: A0A087GCU3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G416500 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.5e-15
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          M+VSR  FG +   +++F+I +P+AQ QS APAPAPTSDGT+IDQGIAYVLMLVAL LTY
Sbjct: 1  MSVSRVFFGIITFISIVFSILMPMAQAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

BLAST of Cp4.1LG14g02440 vs. TrEMBL
Match: A9PA79_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13640g PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.5e-15
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1

Query: 11 VAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS 70
          V A  ++FAI LP+AQ Q  APAPAPTSDGTSIDQGIAYVLM+VALALTYLIH ADLS+S
Sbjct: 11 VVALLVVFAIVLPIAQAQ--APAPAPTSDGTSIDQGIAYVLMMVALALTYLIHAADLSHS 69

Query: 71 F 72
          F
Sbjct: 71 F 69

BLAST of Cp4.1LG14g02440 vs. TrEMBL
Match: W9RQA8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012077 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.8e-15
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MA+S+   G  A  AL+ ++  P A  Q+ APAPAPTSDGTSIDQGIAYVLMLVAL LTY
Sbjct: 1  MAISKVLVGVFAVIALVLSVSFPAAMAQATAPAPAPTSDGTSIDQGIAYVLMLVALVLTY 60

Query: 61 LIHNADLSNSF 72
          LIH A++S SF
Sbjct: 61 LIHAANISYSF 71

BLAST of Cp4.1LG14g02440 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 83.6 bits (205), Expect = 5.5e-17
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1

Query: 4  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S   +A  A +FA+  P A  QSLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

BLAST of Cp4.1LG14g02440 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 83.2 bits (204), Expect = 7.2e-17
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          M+ SR  FG     ++IFAI LP+A  QS APAPAPTSDGT+IDQGIAYVLMLVAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

BLAST of Cp4.1LG14g02440 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-16
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1

Query: 4  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S    A  + +FA+ L +A  QSLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

BLAST of Cp4.1LG14g02440 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-14
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MA  +     +A   +I  I LP+AQ  S +PAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

BLAST of Cp4.1LG14g02440 vs. NCBI nr
Match: gi|659102138|ref|XP_008451971.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 8.2e-23
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR+SF  +AA ALIFAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFELLAATALIFAIFLPVAHPLSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADLSNS 71
          LIHNADLSN+
Sbjct: 61 LIHNADLSNN 70

BLAST of Cp4.1LG14g02440 vs. NCBI nr
Match: gi|449464078|ref|XP_004149756.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR+SFG +AA ALIFAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADL 68
          LIHNADL
Sbjct: 61 LIHNADL 67

BLAST of Cp4.1LG14g02440 vs. NCBI nr
Match: gi|720033434|ref|XP_010266430.1| (PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFG VA  ALIFA+ LP  Q QS+APAPAPTSDGTSIDQGIAYVLMLVAL LTY
Sbjct: 1  MAVSRVSFGVVAIVALIFAVALPAVQAQSVAPAPAPTSDGTSIDQGIAYVLMLVALVLTY 60

Query: 61 LIHNADLSN 70
          LIH  D S+
Sbjct: 61 LIHPLDASS 69

BLAST of Cp4.1LG14g02440 vs. NCBI nr
Match: gi|720017497|ref|XP_010261486.1| (PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 1

Query: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFG +A  ALIF+I  P  Q QSLAPAPAPTSDGTSIDQG+AYVLMLVAL LTY
Sbjct: 1  MAVSRVSFGVMAIVALIFSIAFPAVQAQSLAPAPAPTSDGTSIDQGVAYVLMLVALVLTY 60

Query: 61 LIHNADLSN 70
          LIH  D S+
Sbjct: 61 LIHPLDASS 69

BLAST of Cp4.1LG14g02440 vs. NCBI nr
Match: gi|802735165|ref|XP_012086771.1| (PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1

Query: 1  MAVSRTSFGFVA-AAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALT 60
          MAVSR SFG +A A AL+FAI LP  Q QS APAP+PTSDGTSIDQGIAYVLMLVAL LT
Sbjct: 1  MAVSRVSFGVLAFAVALVFAIALPSVQAQSFAPAPSPTSDGTSIDQGIAYVLMLVALVLT 60

Query: 61 YLIHNAD 67
          YLIH AD
Sbjct: 61 YLIHAAD 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGP20_ARATH9.7e-1665.67Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
AGP16_ARATH4.8e-1564.71Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1[more]
AGP22_ARATH1.3e-1263.49Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KZS8_CUCSA9.8e-2389.55Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1[more]
A0A067JZA6_JATCU8.0e-1779.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1[more]
A0A087GCU3_ARAAL7.5e-1569.84Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G416500 PE=4 SV=1[more]
A9PA79_POPTR7.5e-1578.69Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13640g PE=2 SV=1[more]
W9RQA8_9ROSA9.8e-1564.79Uncharacterized protein OS=Morus notabilis GN=L484_012077 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G61640.15.5e-1765.67 arabinogalactan protein 20[more]
AT5G24105.17.2e-1771.43 arabinogalactan protein 41[more]
AT2G46330.12.7e-1664.71 arabinogalactan protein 16[more]
AT5G53250.17.4e-1463.49 arabinogalactan protein 22[more]
Match NameE-valueIdentityDescription
gi|659102138|ref|XP_008451971.1|8.2e-2387.14PREDICTED: arabinogalactan peptide 22-like [Cucumis melo][more]
gi|449464078|ref|XP_004149756.1|1.4e-2289.55PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus][more]
gi|720033434|ref|XP_010266430.1|2.1e-1878.26PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera][more]
gi|720017497|ref|XP_010261486.1|1.4e-1775.36PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera][more]
gi|802735165|ref|XP_012086771.1|1.1e-1679.10PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0042446 hormone biosynthetic process
biological_process GO:0042430 indole-containing compound metabolic process
biological_process GO:0006811 ion transport
biological_process GO:1901362 organic cyclic compound biosynthetic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0050896 response to stimulus
biological_process GO:0044283 small molecule biosynthetic process
biological_process GO:0008150 biological_process
biological_process GO:0044763 single-organism cellular process
cellular_component GO:0005575 cellular_component
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g02440.1Cp4.1LG14g02440.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 31..63
score: 1.8
NoneNo IPR availablePANTHERPTHR33374FAMILY NOT NAMEDcoord: 1..69
score: 6.3
NoneNo IPR availablePANTHERPTHR33374:SF2ARABINOGALACTAN PEPTIDE 22-RELATEDcoord: 1..69
score: 6.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g02440Cp4.1LG01g00370Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g02440Cucurbita pepo (Zucchini)cpecpeB196
Cp4.1LG14g02440Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g02440Melon (DHL92) v3.5.1cpemeB196
Cp4.1LG14g02440Cucumber (Gy14) v2cgybcpeB324
Cp4.1LG14g02440Cucumber (Gy14) v2cgybcpeB619
Cp4.1LG14g02440Melon (DHL92) v3.6.1cpemedB217
Cp4.1LG14g02440Melon (DHL92) v3.6.1cpemedB230
Cp4.1LG14g02440Cucumber (Chinese Long) v3cpecucB0254