CmoCh04G007510 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G007510
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 3740521 .. 3741887 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGTTAGTTCTCTTTCTTTTATGTTTTATTTTGCATTTCTGTTCCAGATCTGTGTGCAATTCTTTGATCTCTGACCTTTGTTTATTCTTTGATTTCGGTAGAATATTTTGGCGTTATTTTTTAGGTTCTGTTTTTGAGTTAATTGGAATTTTGAAAATTTCGTTTCAATTTACGTTTATGAACTGCGACTTAACAAACTTCTCAAATCTTAGCTTATGTCACTTTTTTGTCCCTTCAATTTATTGTGTATCCCTTCAATTTTTTGTGTGTTCAATCAAGCTTTTGGTGGATCCATTTTTGGTACAAGTACCATCAATTTTAGTTATCTGCGGGCCAATTTGAGAAATTTAAAAAGAAAAAAAAAACTATTTTCATGTAACCATAAAAATGGAAAAAAGTTTCTTAATAGTTTCAATAATTAATAAACATCCCATTCCGAAGTGAAATTAAACCAATTGTCATTATCAGACTAAATATATGGTTTTACTTCTTTTTTCTGCACTTTCTAAATTTATCAAGAAATTTAGCTGCATTGCTCCTTGATTAATTAAATCACACGAGCCTTACATTACAATGTTTTCTACTCAATTACTAGGAGCGGTTTGGGCATTGGCTTGGATTGGGTTCTAAATCCACATCCATGTTTGGTTGAAATAACAAACTCTCTTAAAATCTATGGATACCCCTCGAAATCTATGGTCTCCGTTGAAATTACAATAATTGAGGGTCCACCACTTTTGTTTCCATTTTCTCACAATTATGGTGGTTCCTACCATTTTTGCTTGGGTCTCGTCATTTGTTTAATTAAAATGCAGGGTTATATTATCTTAGTTCAAAATATGGTTAATGTTGAAAAATGAAAAGATCAGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGA

mRNA sequence

CCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGA

Coding sequence (CDS)

ATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGA
Homology
[Close]
BLAST of CmoCh04G007510 vs. TrEMBL
Match: A0A0A0KZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD 40
          MAVSR+SFG +AA AL+F IFLPVA P SLAPAPAPTSD
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSD 39

[Close]
BLAST of CmoCh04G007510 vs. TrEMBL
Match: A5AN82_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_039593 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDEGNQLIGMRAMGIDRDIHRSR 60
          MAVSR S   VA  AL++ + LP A  QSLAPAPAPTSD+GN               RSR
Sbjct: 1  MAVSRVSLVVVAXIALLYAVVLPSAXAQSLAPAPAPTSDDGN---------------RSR 60

Query: 61 DSLYLNGGGIGAHISHP 78
          + + ++   +GAHI HP
Sbjct: 61 NCMCVDASRLGAHIPHP 62

[Close]
BLAST of CmoCh04G007510 vs. TrEMBL
Match: V4KL38_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005210mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-06
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDEGNQLIGMRAMGIDRDIHRSR 60
          M+VSR  FG +   ++VF+I LP+AQ QS APAPAP SD     IG +     R+ +R R
Sbjct: 1  MSVSRLFFGVLTIVSIVFSILLPMAQAQSTAPAPAPISDVN---IGAKYC---RNNNRPR 60

Query: 61 DSLYLNGGGIGAHISHP 78
          +S+  + GG G H+S+P
Sbjct: 61 NSMCSHVGGFGPHLSYP 71

[Close]
BLAST of CmoCh04G007510 vs. NCBI nr
Match: gi|449464078|ref|XP_004149756.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD 40
          MAVSR+SFG +AA AL+F IFLPVA P SLAPAPAPTSD
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSD 39

[Close]
BLAST of CmoCh04G007510 vs. NCBI nr
Match: gi|147842149|emb|CAN62643.1| (hypothetical protein VITISV_039593 [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDEGNQLIGMRAMGIDRDIHRSR 60
          MAVSR S   VA  AL++ + LP A  QSLAPAPAPTSD+GN               RSR
Sbjct: 1  MAVSRVSLVVVAXIALLYAVVLPSAXAQSLAPAPAPTSDDGN---------------RSR 60

Query: 61 DSLYLNGGGIGAHISHP 78
          + + ++   +GAHI HP
Sbjct: 61 NCMCVDASRLGAHIPHP 62

The following BLAST results are available for this feature:
BLAST of CmoCh04G007510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZS8_CUCSA8.4e-0779.49Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1[more]
A5AN82_VITVI1.4e-0646.75Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_039593 P... [more]
V4KL38_EUTSA7.1e-0645.45Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005210mg PE=4 SV=1[more]
BLAST of CmoCh04G007510 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464078|ref|XP_004149756.1|1.2e-0679.49PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus][more]
gi|147842149|emb|CAN62643.1|2.0e-0646.75hypothetical protein VITISV_039593 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G007510.1CmoCh04G007510.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G007510CsaV3_4G006390Cucumber (Chinese Long) v3cmocucB0833
CmoCh04G007510Carg13053Silver-seed gourdcarcmoB0058
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G007510Watermelon (97103) v2cmowmbB677
CmoCh04G007510Watermelon (97103) v2cmowmbB733
CmoCh04G007510Watermelon (97103) v2cmowmbB744
CmoCh04G007510Watermelon (97103) v2cmowmbB757
CmoCh04G007510Wax gourdcmowgoB0825
CmoCh04G007510Wax gourdcmowgoB0850
CmoCh04G007510Cucurbita moschata (Rifu)cmocmoB264
CmoCh04G007510Cucurbita moschata (Rifu)cmocmoB285
CmoCh04G007510Cucumber (Gy14) v1cgycmoB0245
CmoCh04G007510Cucumber (Gy14) v1cgycmoB0833
CmoCh04G007510Cucurbita maxima (Rimu)cmacmoB311
CmoCh04G007510Cucurbita maxima (Rimu)cmacmoB337
CmoCh04G007510Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G007510Wild cucumber (PI 183967)cmocpiB715
CmoCh04G007510Wild cucumber (PI 183967)cmocpiB734
CmoCh04G007510Cucumber (Chinese Long) v2cmocuB705
CmoCh04G007510Cucumber (Chinese Long) v2cmocuB728
CmoCh04G007510Melon (DHL92) v3.5.1cmomeB628
CmoCh04G007510Melon (DHL92) v3.5.1cmomeB686
CmoCh04G007510Watermelon (Charleston Gray)cmowcgB637
CmoCh04G007510Watermelon (Charleston Gray)cmowcgB678
CmoCh04G007510Watermelon (97103) v1cmowmB675
CmoCh04G007510Cucurbita pepo (Zucchini)cmocpeB661
CmoCh04G007510Cucurbita pepo (Zucchini)cmocpeB667
CmoCh04G007510Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G007510Bottle gourd (USVL1VR-Ls)cmolsiB611
CmoCh04G007510Bottle gourd (USVL1VR-Ls)cmolsiB693
CmoCh04G007510Melon (DHL92) v3.6.1cmomedB779
CmoCh04G007510Cucumber (Gy14) v2cgybcmoB521
CmoCh04G007510Cucumber (Gy14) v2cgybcmoB639
CmoCh04G007510Melon (DHL92) v3.6.1cmomedB717
CmoCh04G007510Melon (DHL92) v3.6.1cmomedB773
CmoCh04G007510Silver-seed gourdcarcmoB0492
CmoCh04G007510Silver-seed gourdcarcmoB0804
CmoCh04G007510Cucumber (Chinese Long) v3cmocucB0821
CmoCh04G007510Cucumber (Chinese Long) v3cmocucB0860