CmoCh04G007510.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G007510.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 3740521 .. 3741887 (+)
Sequence length500
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGTTAGTTCTCTTTCTTTTATGTTTTATTTTGCATTTCTGTTCCAGATCTGTGTGCAATTCTTTGATCTCTGACCTTTGTTTATTCTTTGATTTCGGTAGAATATTTTGGCGTTATTTTTTAGGTTCTGTTTTTGAGTTAATTGGAATTTTGAAAATTTCGTTTCAATTTACGTTTATGAACTGCGACTTAACAAACTTCTCAAATCTTAGCTTATGTCACTTTTTTGTCCCTTCAATTTATTGTGTATCCCTTCAATTTTTTGTGTGTTCAATCAAGCTTTTGGTGGATCCATTTTTGGTACAAGTACCATCAATTTTAGTTATCTGCGGGCCAATTTGAGAAATTTAAAAAGAAAAAAAAAACTATTTTCATGTAACCATAAAAATGGAAAAAAGTTTCTTAATAGTTTCAATAATTAATAAACATCCCATTCCGAAGTGAAATTAAACCAATTGTCATTATCAGACTAAATATATGGTTTTACTTCTTTTTTCTGCACTTTCTAAATTTATCAAGAAATTTAGCTGCATTGCTCCTTGATTAATTAAATCACACGAGCCTTACATTACAATGTTTTCTACTCAATTACTAGGAGCGGTTTGGGCATTGGCTTGGATTGGGTTCTAAATCCACATCCATGTTTGGTTGAAATAACAAACTCTCTTAAAATCTATGGATACCCCTCGAAATCTATGGTCTCCGTTGAAATTACAATAATTGAGGGTCCACCACTTTTGTTTCCATTTTCTCACAATTATGGTGGTTCCTACCATTTTTGCTTGGGTCTCGTCATTTGTTTAATTAAAATGCAGGGTTATATTATCTTAGTTCAAAATATGGTTAATGTTGAAAAATGAAAAGATCAGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGA

mRNA sequence

CCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGA

Coding sequence (CDS)

ATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGA
Homology
[Close]
BLAST of CmoCh04G007510.1 vs. TrEMBL
Match: A0A0A0KZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD 40
          MAVSR+SFG +AA AL+F IFLPVA P SLAPAPAPTSD
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSD 39

[Close]
BLAST of CmoCh04G007510.1 vs. TrEMBL
Match: A5AN82_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_039593 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDEGNQLIGMRAMGIDRDIHRSR 60
          MAVSR S   VA  AL++ + LP A  QSLAPAPAPTSD+GN               RSR
Sbjct: 1  MAVSRVSLVVVAXIALLYAVVLPSAXAQSLAPAPAPTSDDGN---------------RSR 60

Query: 61 DSLYLNGGGIGAHISHP 78
          + + ++   +GAHI HP
Sbjct: 61 NCMCVDASRLGAHIPHP 62

[Close]
BLAST of CmoCh04G007510.1 vs. TrEMBL
Match: V4KL38_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005210mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-06
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDEGNQLIGMRAMGIDRDIHRSR 60
          M+VSR  FG +   ++VF+I LP+AQ QS APAPAP SD     IG +     R+ +R R
Sbjct: 1  MSVSRLFFGVLTIVSIVFSILLPMAQAQSTAPAPAPISDVN---IGAKYC---RNNNRPR 60

Query: 61 DSLYLNGGGIGAHISHP 78
          +S+  + GG G H+S+P
Sbjct: 61 NSMCSHVGGFGPHLSYP 71

[Close]
BLAST of CmoCh04G007510.1 vs. NCBI nr
Match: gi|449464078|ref|XP_004149756.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSD 40
          MAVSR+SFG +AA AL+F IFLPVA P SLAPAPAPTSD
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSD 39

[Close]
BLAST of CmoCh04G007510.1 vs. NCBI nr
Match: gi|147842149|emb|CAN62643.1| (hypothetical protein VITISV_039593 [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDEGNQLIGMRAMGIDRDIHRSR 60
          MAVSR S   VA  AL++ + LP A  QSLAPAPAPTSD+GN               RSR
Sbjct: 1  MAVSRVSLVVVAXIALLYAVVLPSAXAQSLAPAPAPTSDDGN---------------RSR 60

Query: 61 DSLYLNGGGIGAHISHP 78
          + + ++   +GAHI HP
Sbjct: 61 NCMCVDASRLGAHIPHP 62

The following BLAST results are available for this feature:
BLAST of CmoCh04G007510.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007510.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZS8_CUCSA8.4e-0779.49Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1[more]
A5AN82_VITVI1.4e-0646.75Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_039593 P... [more]
V4KL38_EUTSA7.1e-0645.45Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005210mg PE=4 SV=1[more]
BLAST of CmoCh04G007510.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007510.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464078|ref|XP_004149756.1|1.2e-0679.49PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus][more]
gi|147842149|emb|CAN62643.1|2.0e-0646.75hypothetical protein VITISV_039593 [Vitis vinifera][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G007510CmoCh04G007510gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G007510.1CmoCh04G007510.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G007510.1.exon.1CmoCh04G007510.1.exon.1exon
CmoCh04G007510.1.exon.2CmoCh04G007510.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G007510.1.five_prime_UTR.1CmoCh04G007510.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G007510.1.CDS.1CmoCh04G007510.1.CDS.1CDS
CmoCh04G007510.1.CDS.2CmoCh04G007510.1.CDS.2CDS