Carg12289 (gene) Silver-seed gourd

NameCarg12289
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMYB transcription factor
LocationCucurbita_argyrosperma_scaffold_074 : 97221 .. 98295 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGATCCCCTTGTTGTGATAAGGCCAATGTGAAGAAGGGCCCTTGGTCCCCTGAGGAGGATGCCAAGCTCAAGGCTTACATTCACAACCATGGCACTGGTGGCAATTGGATCTCCCTCCCTCAAAAAGCTGGTAAAAAAAAAAAAAAAATCACTTTTTTAGGGTTTTTTTTAGGGTTTTTTAGGGTTTTTTTTTAGGGTTTTTTTAGGGTTTTCAATCTCTAAGTGGGGTTTTTGAGTGTTTTTTTGTGTTTTTCTTGATGGGTTTTCTCTTTTTGTTTGTGGGTATTTGAAGGTTTGAAGAGATGTGGAAAGAGTTGTAGGTTGAGATGGCTTAACTATTTGAGGCCCAACATTAAGCATGGAGGCTTCACTGAGGAAGAAGATAGAATAATTTGTACCCTATTTTCCACTATTGGAAGCAGGTAATTTCTTTGCATGCATTTTTCGTTAAGCTTTTAAGTCGAGCGGTGATTTTTCGAATCTTGTTTAGGGTTTGGATTTAACTAAAGAAACTCGTAGGTGGTCGATAATTGCTACTCAGTTACCGGGAAGAACGGATAACGATATCAAAAATCATTGGAATAGCAAATTGAAGAAGAAACTTATAGGAATGGAGAAACACCCTCAAATCATCCCTCCTACTACAATGCCATATTCTTCTCATCATAATGATCATCAAGTTTCATCATTTCCAGCTCAACCACTCAGTTCAATCCCATCAAATTGGTCAAACAACAACGACAACGACAACGACAACATCGACAACATTAGCCCTTGTCTTGTCCCGACACAAGAATCCAACATGAACAGCTTGTTGAGCTCCTTGATGTTTCAGCATAATCAAACCCTAGATGGAAGAAGCTGCACTCAAATCAACAACACTTCAAGAATCATGATGATGGGGTTTCAGAATCAAACCCATAATTACAATTATTATTATGATGCTATGAATGATGAAGAACATAACAACATATGCTTCAATGGAGGAGGAGGAGGAGGAGATGATGATCATGTTCATAGCACCACCAGCTTGTTCCAATGCATGGAGGGAAATTTCATGAAGTTCTAG

mRNA sequence

ATGGGAAGATCCCCTTGTTGTGATAAGGCCAATGTGAAGAAGGGCCCTTGGTCCCCTGAGGAGGATGCCAAGCTCAAGGCTTACATTCACAACCATGGCACTGGTGGCAATTGGATCTCCCTCCCTCAAAAAGCTGGTTTGAAGAGATGTGGAAAGAGTTGTAGGTTGAGATGGCTTAACTATTTGAGGCCCAACATTAAGCATGGAGGCTTCACTGAGGAAGAAGATAGAATAATTTGTACCCTATTTTCCACTATTGGAAGCAGGTGGTCGATAATTGCTACTCAGTTACCGGGAAGAACGGATAACGATATCAAAAATCATTGGAATAGCAAATTGAAGAAGAAACTTATAGGAATGGAGAAACACCCTCAAATCATCCCTCCTACTACAATGCCATATTCTTCTCATCATAATGATCATCAAGTTTCATCATTTCCAGCTCAACCACTCAGTTCAATCCCATCAAATTGGTCAAACAACAACGACAACGACAACGACAACATCGACAACATTAGCCCTTGTCTTGTCCCGACACAAGAATCCAACATGAACAGCTTGTTGAGCTCCTTGATGTTTCAGCATAATCAAACCCTAGATGGAAGAAGCTGCACTCAAATCAACAACACTTCAAGAATCATGATGATGGGGTTTCAGAATCAAACCCATAATTACAATTATTATTATGATGCTATGAATGATGAAGAACATAACAACATATGCTTCAATGGAGGAGGAGGAGGAGGAGATGATGATCATGTTCATAGCACCACCAGCTTGTTCCAATGCATGGAGGGAAATTTCATGAAGTTCTAG

Coding sequence (CDS)

ATGGGAAGATCCCCTTGTTGTGATAAGGCCAATGTGAAGAAGGGCCCTTGGTCCCCTGAGGAGGATGCCAAGCTCAAGGCTTACATTCACAACCATGGCACTGGTGGCAATTGGATCTCCCTCCCTCAAAAAGCTGGTTTGAAGAGATGTGGAAAGAGTTGTAGGTTGAGATGGCTTAACTATTTGAGGCCCAACATTAAGCATGGAGGCTTCACTGAGGAAGAAGATAGAATAATTTGTACCCTATTTTCCACTATTGGAAGCAGGTGGTCGATAATTGCTACTCAGTTACCGGGAAGAACGGATAACGATATCAAAAATCATTGGAATAGCAAATTGAAGAAGAAACTTATAGGAATGGAGAAACACCCTCAAATCATCCCTCCTACTACAATGCCATATTCTTCTCATCATAATGATCATCAAGTTTCATCATTTCCAGCTCAACCACTCAGTTCAATCCCATCAAATTGGTCAAACAACAACGACAACGACAACGACAACATCGACAACATTAGCCCTTGTCTTGTCCCGACACAAGAATCCAACATGAACAGCTTGTTGAGCTCCTTGATGTTTCAGCATAATCAAACCCTAGATGGAAGAAGCTGCACTCAAATCAACAACACTTCAAGAATCATGATGATGGGGTTTCAGAATCAAACCCATAATTACAATTATTATTATGATGCTATGAATGATGAAGAACATAACAACATATGCTTCAATGGAGGAGGAGGAGGAGGAGATGATGATCATGTTCATAGCACCACCAGCTTGTTCCAATGCATGGAGGGAAATTTCATGAAGTTCTAG

Protein sequence

MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGMEKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWSNNNDNDNDNIDNISPCLVPTQESNMNSLLSSLMFQHNQTLDGRSCTQINNTSRIMMMGFQNQTHNYNYYYDAMNDEEHNNICFNGGGGGGDDDHVHSTTSLFQCMEGNFMKF
BLAST of Carg12289 vs. NCBI nr
Match: XP_022948843.1 (transcription factor MYB36-like [Cucurbita moschata])

HSP 1 Score: 481.1 bits (1237), Expect = 2.5e-132
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM
Sbjct: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120

Query: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWSXXXXXXXXXXXXISPCLVPTQ 180
           EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWSXXXXXXXXXXXXISPCLVPTQ
Sbjct: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWSXXXXXXXXXXXXISPCLVPTQ 180

Query: 181 ESNMNSLLSSLMFQHNQTLDGRSCTQINNTSRIMMMGFQNQTHNYNXXXXXXXXXXXXXX 240
           ESNMNSLLSSLMFQHNQTLDGRSCTQINNTSRIMMMGFQNQTHNYNXXXXXXXXXXXXXX
Sbjct: 181 ESNMNSLLSSLMFQHNQTLDGRSCTQINNTSRIMMMGFQNQTHNYNXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXHSTTSLFQCMEGNFMKF 272
           XXXXXXXXXXXXXXHSTTSLFQCMEGNFMKF
Sbjct: 241 XXXXXXXXXXXXXXHSTTSLFQCMEGNFMKF 271

BLAST of Carg12289 vs. NCBI nr
Match: XP_023524586.1 (transcription factor MYB36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 463.8 bits (1192), Expect = 4.1e-127
Identity = 264/272 (97.06%), Postives = 266/272 (97.79%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGFTEEEDRIICTL+STIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM
Sbjct: 61  YLRPNIKHGGFTEEEDRIICTLYSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120

Query: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWSXXXXXXXXXXXXISPCLVPTQ 180
           EK+PQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWS   XXXXXXXXXISPCLVPTQ
Sbjct: 121 EKNPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWS-NDXXXXXXXXXISPCLVPTQ 180

Query: 181 ESNMNSLLSSLMFQHNQTLDGRSCTQINNTSRIMMMGFQNQTHNYN-XXXXXXXXXXXXX 240
           ESNMNSLLSSLMFQHNQTLD RSCTQINNTSRIMMMGFQNQTHNYN XXXXXXXXXXXXX
Sbjct: 181 ESNMNSLLSSLMFQHNQTLDARSCTQINNTSRIMMMGFQNQTHNYNXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXHSTTSLFQCMEGNFMKF 272
           XXXXXXXXXXXXXXXHSTTSLFQCMEG FMKF
Sbjct: 241 XXXXXXXXXXXXXXXHSTTSLFQCMEGKFMKF 271

BLAST of Carg12289 vs. NCBI nr
Match: XP_022998892.1 (transcription factor MYB36-like [Cucurbita maxima])

HSP 1 Score: 458.4 bits (1178), Expect = 1.7e-125
Identity = 255/274 (93.07%), Postives = 256/274 (93.43%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM
Sbjct: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120

Query: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWSXXXXXXXXXXXXISPCLVPTQ 180
           EKHPQII PTTMPYSSHHNDHQVSSFPAQPLSSIPSNWS            ISPCLVPTQ
Sbjct: 121 EKHPQII-PTTMPYSSHHNDHQVSSFPAQPLSSIPSNWS-------NDNDNISPCLVPTQ 180

Query: 181 ESNMNSLLSSLMFQHNQTLDGRSCTQINNTSRIMMMGFQNQTHNYN---XXXXXXXXXXX 240
           ESNMNSLLSSLM+QHNQTLDGRSCTQINNTSRIMMMGFQNQ HNYN   XXXXXXXXXXX
Sbjct: 181 ESNMNSLLSSLMYQHNQTLDGRSCTQINNTSRIMMMGFQNQPHNYNXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXHSTTSLFQCMEGNFMKF 272
           XXXXXXXXXXXXXXXXXHSTTSLFQCMEG FMKF
Sbjct: 241 XXXXXXXXXXXXXXXXXHSTTSLFQCMEGKFMKF 266

BLAST of Carg12289 vs. NCBI nr
Match: XP_022964958.1 (transcription factor MYB87-like [Cucurbita moschata])

HSP 1 Score: 290.4 bits (742), Expect = 6.2e-75
Identity = 157/249 (63.05%), Postives = 176/249 (70.68%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKA VKKGPWSPEEDAKLKAYI NHGT GNWISLPQKAGL RCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIA+QLPGRTDNDIKNHWNSKLK+KLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLIAM 120

Query: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPL-------------SSIPSNWSXXXXXXXX 180
           EK  Q+    TMP  S HN HQ+SSFP+Q L             SSIPSNWS        
Sbjct: 121 EKKAQM---GTMP--SFHNHHQISSFPSQQLYQDSNFSSFETLISSIPSNWSN------- 180

Query: 181 XXXXISPCLVPTQESNMNSLL-SSLMFQHNQTL---------DGRSCT-QINNTSRIMMM 226
                    + T+E+N NSL+ +SLM+ +N  +         +G +C    N  +   +M
Sbjct: 181 ---------IQTKETNSNSLMNNSLMYNNNPMVKQSSLGFGSEGSTCDGSYNQITPSGIM 227

BLAST of Carg12289 vs. NCBI nr
Match: XP_023520293.1 (transcription factor MYB87-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.9 bits (738), Expect = 1.8e-74
Identity = 156/250 (62.40%), Postives = 175/250 (70.00%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKA VKKGPWSPEEDAKLKAYI NHGT GNWISLPQKAGL RCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIA+QLPGRTDNDIKNHWNSKLK+KLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLIAM 120

Query: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPL-------------SSIPSNWSXXXXXXXX 180
           EK  Q+    TMP  S HN HQ+SSFP+Q L             SSIPSNWS        
Sbjct: 121 EKKAQM---GTMP--SFHNHHQISSFPSQQLYQDSNFSSFETLISSIPSNWSN------- 180

Query: 181 XXXXISPCLVPTQESNMNSLLS-SLMFQHNQTL----------DGRSCT-QINNTSRIMM 226
                    + T+E+N NSL++  LM+ +N  +          +G +C    N  +   +
Sbjct: 181 ---------IQTKETNSNSLMNXXLMYNNNNPMVKQSSLGFGSEGSTCDGSYNQITPSGI 228

BLAST of Carg12289 vs. TAIR10
Match: AT3G49690.1 (myb domain protein 84)

HSP 1 Score: 235.7 bits (600), Expect = 3.3e-62
Identity = 102/122 (83.61%), Postives = 114/122 (93.44%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEEDAKLK+YI N GTGGNWI+LPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGF+EEE+ IIC+L+ TIGSRWSIIA QLPGRTDNDIKN+WN++LKKKLI  
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINK 120

Query: 121 EK 123
           ++
Sbjct: 121 QR 122

BLAST of Carg12289 vs. TAIR10
Match: AT5G65790.1 (myb domain protein 68)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-61
Identity = 101/122 (82.79%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEEDAKLK YI N GTGGNWI+LPQK GL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGF+EEED IIC L+ TIGSRWSIIA QLPGRTDNDIKN+WN++LKKKL+  
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLNK 120

Query: 121 EK 123
           ++
Sbjct: 121 QR 122

BLAST of Carg12289 vs. TAIR10
Match: AT5G57620.1 (myb domain protein 36)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-61
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEED KLK YI  +GTGGNWI+LPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGF+EEEDRII +L+ +IGSRWSIIA QLPGRTDNDIKN+WN+KLKKKL+G 
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 EK 123
           +K
Sbjct: 121 QK 122

BLAST of Carg12289 vs. TAIR10
Match: AT4G37780.1 (myb domain protein 87)

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-58
Identity = 95/121 (78.51%), Postives = 109/121 (90.08%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK  VKKGPWS EEDA LK+YI  HGTG NWISLPQ+ G+KRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPN+KHGGFT+EED IIC+L+ TIGSRWSIIA+QLPGRTDNDIKN+WN++LKKKL+  
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLSK 120

Query: 121 E 122
           +
Sbjct: 121 Q 121

BLAST of Carg12289 vs. TAIR10
Match: AT2G36890.1 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-55
Identity = 92/114 (80.70%), Postives = 103/114 (90.35%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVK+GPWSPEEDAKLK YI   GTGGNWI+LP KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLK 115
           YLRPNI+HG FTEEED II +LF++IGSRWS+IA  L GRTDNDIKN+WN+KLK
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLK 114

BLAST of Carg12289 vs. Swiss-Prot
Match: sp|Q9M2Y9|RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.9e-61
Identity = 102/122 (83.61%), Postives = 114/122 (93.44%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEEDAKLK+YI N GTGGNWI+LPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGF+EEE+ IIC+L+ TIGSRWSIIA QLPGRTDNDIKN+WN++LKKKLI  
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINK 120

Query: 121 EK 123
           ++
Sbjct: 121 QR 122

BLAST of Carg12289 vs. Swiss-Prot
Match: sp|Q9FKL2|MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.9e-60
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEED KLK YI  +GTGGNWI+LPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGF+EEEDRII +L+ +IGSRWSIIA QLPGRTDNDIKN+WN+KLKKKL+G 
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 EK 123
           +K
Sbjct: 121 QK 122

BLAST of Carg12289 vs. Swiss-Prot
Match: sp|F4JSU0|MYB87_ARATH (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.2e-57
Identity = 95/121 (78.51%), Postives = 109/121 (90.08%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK  VKKGPWS EEDA LK+YI  HGTG NWISLPQ+ G+KRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPN+KHGGFT+EED IIC+L+ TIGSRWSIIA+QLPGRTDNDIKN+WN++LKKKL+  
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLSK 120

Query: 121 E 122
           +
Sbjct: 121 Q 121

BLAST of Carg12289 vs. Swiss-Prot
Match: sp|Q9SJL7|RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-54
Identity = 92/114 (80.70%), Postives = 103/114 (90.35%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVK+GPWSPEEDAKLK YI   GTGGNWI+LP KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLK 115
           YLRPNI+HG FTEEED II +LF++IGSRWS+IA  L GRTDNDIKN+WN+KLK
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLK 114

BLAST of Carg12289 vs. Swiss-Prot
Match: sp|Q9FG68|RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 7.0e-54
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK  VK+GPWSPEED+KL+ YI  +G GGNWIS P KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKK 117
           YLRPNIKHG F+EEEDRII +LF+ IGSRWSIIA  LPGRTDNDIKN+WN+KL+KK
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKK 116

BLAST of Carg12289 vs. TrEMBL
Match: tr|A0A0A0LUZ6|A0A0A0LUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G109320 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.3e-72
Identity = 160/277 (57.76%), Postives = 178/277 (64.26%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDK+NVKKGPWSPEEDAKLK +I  +GTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKSNVKKGPWSPEEDAKLKDFIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLK+KLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIEM 120

Query: 121 EKHPQIIPPTTMP-------------YSS-----------------HHNDHQVSSFPA-- 180
           EK  QI    T+P             +SS                 +++++ +SS P   
Sbjct: 121 EKKAQITTSRTIPSXXXXXXXXXXXXFSSQPLSSLINKHDDYFNDINYSNYNLSSPPTTI 180

Query: 181 ----QPLSSIPSNWSXXXXXXXXXXXXISPCLVPTQESNMNSLLSSLMFQH--------- 220
                 +SSIPSNWS  XX         SPCLV TQE+      +SLM+ H         
Sbjct: 181 KSFESLISSIPSNWSNNXXNISP-----SPCLVQTQETTNLLSSNSLMYNHHNPLVQMKE 240

BLAST of Carg12289 vs. TrEMBL
Match: tr|A0A2N9EYF9|A0A2N9EYF9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7662 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 115/153 (75.16%), Postives = 129/153 (84.31%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEED+KLK YI  +GTGGNWI+LPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHG F++EEDRIICTLF++IGSRWSIIA QLPGRTDNDIKN+WN+KLKKKL+GM
Sbjct: 61  YLRPNIKHGEFSDEEDRIICTLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGM 120

Query: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSS 154
                 +PP+        N HQ   F +QPLSS
Sbjct: 121 ------LPPSQRKPPPFPNSHQTPPFQSQPLSS 147

BLAST of Carg12289 vs. TrEMBL
Match: tr|A0A2P4M0T2|A0A2P4M0T2_QUESU (Transcription factor myb36 OS=Quercus suber OX=58331 GN=CFP56_33206 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.2e-62
Identity = 130/226 (57.52%), Postives = 153/226 (67.70%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEED+KLK YI  +GTGGNWI+LPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHG F++EEDRIICTLF++IGSRWSIIA QLPGRTDNDIKN+WN+KLKKKL+GM
Sbjct: 61  YLRPNIKHGEFSDEEDRIICTLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGM 120

Query: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSIPSNWSXXXXXXXXXXXXISPCLVPTQ 180
               Q  PP   P+ S    HQ   F +QPLS    + S            +    VP  
Sbjct: 121 LPPSQRKPP---PFPS---PHQGPPFQSQPLSYKECSLSYYSPTTTKSFSGLESMSVPLN 180

Query: 181 ESNMNSLLS----SLMFQHNQTLDGRSCTQINNTSRIMMMGFQNQT 223
            SN  + L+    S +FQ  ++  G S         ++M G +  T
Sbjct: 181 FSNTTTSLATNNPSSLFQTQESWLG-SMQYYPVKENLLMFGSEGST 219

BLAST of Carg12289 vs. TrEMBL
Match: tr|A0A061GYH8|A0A061GYH8_THECC (Myb domain protein 36, putative OS=Theobroma cacao OX=3641 GN=TCM_042012 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.8e-62
Identity = 116/154 (75.32%), Postives = 130/154 (84.42%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEED+KLK YI  +GTGGNWI+LPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHG FT+EEDRIIC+LF++IGSRWSIIA QLPGRTDNDIKN+WN+KLKKKL+ M
Sbjct: 61  YLRPNIKHGEFTDEEDRIICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120

Query: 121 EKHPQIIPPTTMPYSSHHNDHQVSSFPAQPLSSI 155
               Q  PP   P+ S H+   VSS   Q LSS+
Sbjct: 121 TAQSQRKPP---PFPSSHHTPPVSS---QSLSSL 148

BLAST of Carg12289 vs. TrEMBL
Match: tr|A0A1U8MJA5|A0A1U8MJA5_GOSHI (transcription factor RAX3-like OS=Gossypium hirsutum OX=3635 GN=LOC107938316 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.9e-62
Identity = 111/146 (76.03%), Postives = 125/146 (85.62%), Query Frame = 0

Query: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDKANVKKGPWSPEEDAKLKAYI N+GTGGNWISLPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKAYIENYGTGGNWISLPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120
           YLRPNIKHGGF+EEED IIC+L+ +IGSRWSIIA QLPGRTDNDIKN+WN++LKKKL+G 
Sbjct: 61  YLRPNIKHGGFSEEEDEIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120

Query: 121 EKHPQ-IIPPTTMPYSSHHNDHQVSS 146
              P+   P   +PYSS     Q ++
Sbjct: 121 YPRPEPPFPVVPVPYSSQEQSIQFTN 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022948843.12.5e-132100.00transcription factor MYB36-like [Cucurbita moschata][more]
XP_023524586.14.1e-12797.06transcription factor MYB36-like [Cucurbita pepo subsp. pepo][more]
XP_022998892.11.7e-12593.07transcription factor MYB36-like [Cucurbita maxima][more]
XP_022964958.16.2e-7563.05transcription factor MYB87-like [Cucurbita moschata][more]
XP_023520293.11.8e-7462.40transcription factor MYB87-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT3G49690.13.3e-6283.61myb domain protein 84[more]
AT5G65790.11.3e-6182.79myb domain protein 68[more]
AT5G57620.11.6e-6183.61myb domain protein 36[more]
AT4G37780.12.9e-5878.51myb domain protein 87[more]
AT2G36890.11.3e-5580.70Duplicated homeodomain-like superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q9M2Y9|RAX3_ARATH5.9e-6183.61Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1[more]
sp|Q9FKL2|MYB36_ARATH2.9e-6083.61Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1[more]
sp|F4JSU0|MYB87_ARATH5.2e-5778.51Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1[more]
sp|Q9SJL7|RAX2_ARATH2.4e-5480.70Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1[more]
sp|Q9FG68|RAX1_ARATH7.0e-5478.45Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LUZ6|A0A0A0LUZ6_CUCSA3.3e-7257.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G109320 PE=4 SV=1[more]
tr|A0A2N9EYF9|A0A2N9EYF9_FAGSY1.6e-6375.16Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7662 PE=4 SV=1[more]
tr|A0A2P4M0T2|A0A2P4M0T2_QUESU5.2e-6257.52Transcription factor myb36 OS=Quercus suber OX=58331 GN=CFP56_33206 PE=4 SV=1[more]
tr|A0A061GYH8|A0A061GYH8_THECC6.8e-6275.32Myb domain protein 36, putative OS=Theobroma cacao OX=3641 GN=TCM_042012 PE=4 SV... [more]
tr|A0A1U8MJA5|A0A1U8MJA5_GOSHI8.9e-6276.03transcription factor RAX3-like OS=Gossypium hirsutum OX=3635 GN=LOC107938316 PE=... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR017930Myb_dom
IPR001005SANT/Myb
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12289-RACarg12289-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 67..115
e-value: 8.0E-12
score: 55.3
coord: 13..64
e-value: 1.5E-11
score: 54.3
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 69..111
e-value: 1.1E-11
score: 44.5
coord: 14..62
e-value: 2.5E-15
score: 56.2
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 71..113
e-value: 1.36975E-8
score: 48.7258
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 16..62
e-value: 1.28984E-8
score: 49.111
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 7..68
e-value: 2.4E-19
score: 70.8
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 70..142
e-value: 5.1E-19
score: 70.1
NoneNo IPR availablePANTHERPTHR10641:SF654TRANSCRIPTION FACTOR RAX2-RELATEDcoord: 1..224
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 1..224
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 63..117
score: 22.71
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 9..62
score: 14.357
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 11..109

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12289Carg02582Silver-seed gourdcarcarB448
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12289Silver-seed gourdcarcarB450
Carg12289Wax gourdcarwgoB0532