Cp4.1LG02g12550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g12550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb transcription factor
LocationCp4.1LG02 : 11687974 .. 11689094 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTCTCTTTTTGTTGGTGGGTATTTGAAGGTTTGAAGAGATGTGGAAAGAGTTGTAGGTTGAGATGGCTTAACTATTTGAGGCCCAACATTAAGCATGGAGGCTTCACTGAGGAAGAAGATAGAATAATTTGTACCCTATATTCCACTATTGGAAGCAGGTAATTTCTTTGCATGCATTTTTCGTTAAGCTTTTAAGTCGAGCGGTGATTTTTCGAATCTTGTTTAGGGTTTGGATTTAACTAAAGAAACTCGTAGGTGGTCGATAATTGCTACTCAGTTACCGGGGAGAACGGATAACGATATCAAGAATCATTGGAATAGCAAATTGAAGAAGAAACTTATAGGAATGGAGAAAAACCCTCAAATCATCCCTCCTACTACAATGCCATATTCTTCTCATCATAATGATCATCAAGTTTCATCATTTCCAGCTCAACCACTCAGTTCAATCCCATCAAATTGGTCAAACGACAACGACAACGACAACAACATCGACAACATTAGCCCTTGTCTTGTCCCAACACAAGAATCCAACATGAACAGCTTATTGAGCTCCTTGATGTTTCAGCATAATCAAACCCTAGATGCAAGAAGCTGCACTCAAATCAACAACACTTCAAGAATCATGATGATGGGGTTTCAGAATCAAACCCATAATTACAATTATTATTATGATGCTATGAATGATGAAGAACATAACAACATATGCTTCAATGGAGGAGGAGGAGGAGGAGGAGGAGATGATCATGTTCATAGCACCACCAGCTTGTTCCAATGCATGGAGGGAAAGTTCATGAAGTTCTAGTGCATTAAGAGGATGTTTAAAGGAAGGGTTGGCTTGATTTTGTGGAGTTTGTTTGTTAATGAAGGGAAATTAATGATGTGAAATTGTGGTACGGTCTTATCGGATGCAGTTTGATTCAAAATTCAAAGCTATAGTGTTTGATGAAAACTAGAAGTGGTGTTGTTGTTGTTGTTCTTAATTAAAAGTAATGTATTTTGGTGTCAAAATTGGTTTGAGGGCCATGATGTTTTATAGGCGACTGGTGGAGCTATGGAGCTATTGAAGAGACATTTCAGGGCCTGCAAAATCACTACACTTTCAAGAACTTGA

mRNA sequence

ATGGGTTTGAAGAGATGTGGAAAGAGTTGTAGGTTGAGATGGCTTAACTATTTGAGGCCCAACATTAAGCATGGAGGCTTCACTGAGGAAGAAGATAGAATAATTTGTACCCTATATTCCACTATTGGAAGCAGTTCAATCCCATCAAATTGGTCAAACGACAACGACAACGACAACAACATCGACAACATTAGCCCTTGTCTTGTCCCAACACAAGAATCCAACATGAACAGCTTATTGAGCTCCTTGATGTTTCAGCATAATCAAACCCTAGATGCAAGAAGCTGCACTCAAATCAACAACACTTCAAGAATCATGATGATGGGGTTTCAGAATCAAACCCATAATTACAATTATTATTATGATGCTATGAATGATGAAGAACATAACAACATATGCTTCAATGGAGGAGGAGGAGGAGGAGGAGGAGATGATCATGCGACTGGTGGAGCTATGGAGCTATTGAAGAGACATTTCAGGGCCTGCAAAATCACTACACTTTCAAGAACTTGA

Coding sequence (CDS)

ATGGGTTTGAAGAGATGTGGAAAGAGTTGTAGGTTGAGATGGCTTAACTATTTGAGGCCCAACATTAAGCATGGAGGCTTCACTGAGGAAGAAGATAGAATAATTTGTACCCTATATTCCACTATTGGAAGCAGTTCAATCCCATCAAATTGGTCAAACGACAACGACAACGACAACAACATCGACAACATTAGCCCTTGTCTTGTCCCAACACAAGAATCCAACATGAACAGCTTATTGAGCTCCTTGATGTTTCAGCATAATCAAACCCTAGATGCAAGAAGCTGCACTCAAATCAACAACACTTCAAGAATCATGATGATGGGGTTTCAGAATCAAACCCATAATTACAATTATTATTATGATGCTATGAATGATGAAGAACATAACAACATATGCTTCAATGGAGGAGGAGGAGGAGGAGGAGGAGATGATCATGCGACTGGTGGAGCTATGGAGCTATTGAAGAGACATTTCAGGGCCTGCAAAATCACTACACTTTCAAGAACTTGA

Protein sequence

MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGSSSIPSNWSNDNDNDNNIDNISPCLVPTQESNMNSLLSSLMFQHNQTLDARSCTQINNTSRIMMMGFQNQTHNYNYYYDAMNDEEHNNICFNGGGGGGGGDDHATGGAMELLKRHFRACKITTLSRT
Homology
[Close]
BLAST of Cp4.1LG02g12550 vs. Swiss-Prot
Match: MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.4e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           +GLKRCGKSCRLRWLNYLRPNIKHGGF+EEEDRII +LY +IGS  S I +      DND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 58/145 (40.00%), Postives = 77/145 (53.10%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS------SSIPSNWSND 60
           +GLKRCGKSCRLRWLNYLRPNIKHGGF+EEE+ IIC+LY TIGS      + +P    ND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDND 104

Query: 61  NDNDNNIDNISPCLVPTQESNMNSLLSSLMFQHNQTLDARSCTQINNTSRIMMMGFQNQT 120
             N  N   +   L+  Q   +    + +  Q    +  R   Q    +  MM   Q+QT
Sbjct: 105 IKNYWN-TRLKKKLINKQRKELQE--ACMEQQEMMVMMKRQHQQQQIQTSFMMR--QDQT 164

Query: 121 ------HNYNYYYDAMNDEEHNNIC 134
                 H++N    A+   + N+ C
Sbjct: 165 MFTWPLHHHNVQVPALFMNQTNSFC 184

[Close]
BLAST of Cp4.1LG02g12550 vs. Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-15
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 2   GLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           GL+RCGKSCRLRWLNYLRPNI+HG FTEEED II +L+++IGS  S I ++     DND
Sbjct: 46  GLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1 

Query: 2   GLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS------SSIPSNWSNDN 61
           GL+RCGKSCRLRWLNYLRPNIKHG F+EEEDRII +L++ IGS      + +P    ND 
Sbjct: 46  GLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDI 105

Query: 62  DNDNNIDNISPCLVPTQESNMNSLLS 82
            N  N       L  + +S+ +++ S
Sbjct: 106 KNYWNTKLRKKLLSSSSDSSSSAMAS 131

[Close]
BLAST of Cp4.1LG02g12550 vs. Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1 

Query: 2   GLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           GL+RCGKSCRLRW+NYLRP++K G FTEEED +I  L+S +G+  S I        DN+
Sbjct: 45  GLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNE 103

[Close]
BLAST of Cp4.1LG02g12550 vs. TrEMBL
Match: A0A0A0LUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109320 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.0e-17
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 2   GLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           GLKRCGKSCRLRWLNYLRPNIKHGGFT+EEDRIICTL+STIGS  S I +      DND
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. TrEMBL
Match: A0A061GXE3_THECC (Myb domain protein 36 OS=Theobroma cacao GN=TCM_038898 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 50/88 (56.82%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS------SSIPSNWSND 60
           +GLKRCGKSCRLRWLNYLRPNIKHGGF+EEED IIC+LY +IGS      + +P    ND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDND 104

Query: 61  NDNDNNIDNISPCLVPTQESNMNSLLSS 83
             N  N       L   ++SN+N L SS
Sbjct: 105 IKNYWNTKLKKKLLGRRKQSNINRLSSS 132

[Close]
BLAST of Cp4.1LG02g12550 vs. TrEMBL
Match: M1BM59_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018750 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 50/86 (58.14%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS------SSIPSNWSND 60
           +GLKRCGKSCRLRWLNYLRPNIKHGGFTEEED IIC+LY +IGS      + +P    ND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDND 104

Query: 61  NDNDNNIDNISPCLVPTQESNMNSLL 81
             N  N       L   ++S MN LL
Sbjct: 105 IKNYWNTRLKKKLLGKRKQSQMNRLL 130

[Close]
BLAST of Cp4.1LG02g12550 vs. TrEMBL
Match: K4CBE6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 50/86 (58.14%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS------SSIPSNWSND 60
           +GLKRCGKSCRLRWLNYLRPNIKHGGFTEEED IIC+LY +IGS      + +P    ND
Sbjct: 103 IGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDND 162

Query: 61  NDNDNNIDNISPCLVPTQESNMNSLL 81
             N  N       L   ++S MN LL
Sbjct: 163 IKNYWNTRLKKKLLGKRKQSQMNRLL 188

[Close]
BLAST of Cp4.1LG02g12550 vs. TrEMBL
Match: A0A072V235_MEDTR (Myb transcription factor OS=Medicago truncatula GN=MTR_3g103570 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           +GLKRCGKSCRLRWLNYLRPNIKHGGFTEEED IIC+LY TIGS  S I        DND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYVTIGSRWSVIAGQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. TAIR10
Match: AT4G37780.1 (AT4G37780.1 myb domain protein 87)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-19
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           +G+KRCGKSCRLRWLNYLRPN+KHGGFT+EED IIC+LY TIGS  S I S      DND
Sbjct: 45  IGIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. TAIR10
Match: AT5G65790.1 (AT5G65790.1 myb domain protein 68)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-18
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           +GL+RCGKSCRLRWLNYLRPNIKHGGF+EEED IIC LY TIGS  S I +      DND
Sbjct: 45  IGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. TAIR10
Match: AT5G57620.1 (AT5G57620.1 myb domain protein 36)

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-18
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           +GLKRCGKSCRLRWLNYLRPNIKHGGF+EEEDRII +LY +IGS  S I +      DND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. TAIR10
Match: AT3G49690.1 (AT3G49690.1 myb domain protein 84)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 58/145 (40.00%), Postives = 77/145 (53.10%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS------SSIPSNWSND 60
           +GLKRCGKSCRLRWLNYLRPNIKHGGF+EEE+ IIC+LY TIGS      + +P    ND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDND 104

Query: 61  NDNDNNIDNISPCLVPTQESNMNSLLSSLMFQHNQTLDARSCTQINNTSRIMMMGFQNQT 120
             N  N   +   L+  Q   +    + +  Q    +  R   Q    +  MM   Q+QT
Sbjct: 105 IKNYWN-TRLKKKLINKQRKELQE--ACMEQQEMMVMMKRQHQQQQIQTSFMMR--QDQT 164

Query: 121 ------HNYNYYYDAMNDEEHNNIC 134
                 H++N    A+   + N+ C
Sbjct: 165 MFTWPLHHHNVQVPALFMNQTNSFC 184

[Close]
BLAST of Cp4.1LG02g12550 vs. TAIR10
Match: AT2G36890.1 (AT2G36890.1 Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-16
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 2   GLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           GL+RCGKSCRLRWLNYLRPNI+HG FTEEED II +L+++IGS  S I ++     DND
Sbjct: 46  GLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. NCBI nr
Match: gi|700209713|gb|KGN64809.1| (hypothetical protein Csa_1G109320 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 2   GLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           GLKRCGKSCRLRWLNYLRPNIKHGGFT+EEDRIICTL+STIGS  S I +      DND
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. NCBI nr
Match: gi|659072274|ref|XP_008464692.1| (PREDICTED: transcription factor RAX2-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 2   GLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           GLKRCGKSCRLRWLNYLRPNIKHGGFT+EEDRIICTL+STIGS  S I +      DND
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. NCBI nr
Match: gi|848860862|ref|XP_012831262.1| (PREDICTED: transcription factor RAX3-like [Erythranthe guttata])

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 61/143 (42.66%), Postives = 79/143 (55.24%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS------SSIPSNWSND 60
           +GLKRCGKSCRLRWLNYLRPNIKHGGFTEEED IIC+LY +IGS      + +P    ND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDND 104

Query: 61  NDNDNNIDNISPCLVPTQESNMNSLLSSLMFQHNQTLD--ARSCTQINNTSRIMMMGFQN 120
             N  N       L   + SN N+  S+ +  HN ++D         NN S   +   Q 
Sbjct: 105 IKNYWNTRLKKKLLGRRKNSNSNNRFSNNIPGHNPSIDNATEEEKSYNNLSSSALERLQL 164

Query: 121 QTHNYNYYYDAMNDEEHNNICFN 136
             H  N   +  N++ +N + F+
Sbjct: 165 HMHLQN---NNNNNDNNNPLSFH 184

[Close]
BLAST of Cp4.1LG02g12550 vs. NCBI nr
Match: gi|698435519|ref|XP_009800575.1| (PREDICTED: transcription factor RAX2-like [Nicotiana sylvestris])

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 45/59 (76.27%), Postives = 48/59 (81.36%), Query Frame = 1 

Query: 2   GLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS--SSIPSNWSNDNDND 59
           GLKRCGKSCRLRWLNYLRPNIKHG F+EEEDR+ICTLYSTIGS  S I +      DND
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGDFSEEEDRVICTLYSTIGSRWSIIAAQLPGRTDND 104

[Close]
BLAST of Cp4.1LG02g12550 vs. NCBI nr
Match: gi|970040700|ref|XP_015081741.1| (PREDICTED: transcription factor RAX1 [Solanum pennellii])

HSP 1 Score: 93.2 bits (230), Expect = 4.7e-16
Identity = 50/86 (58.14%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 1   MGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLYSTIGS------SSIPSNWSND 60
           +GLKRCGKSCRLRWLNYLRPNIKHGGFTEEED IIC+LY +IGS      + +P    ND
Sbjct: 45  IGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDND 104

Query: 61  NDNDNNIDNISPCLVPTQESNMNSLL 81
             N  N       L   ++S MN LL
Sbjct: 105 IKNYWNTRLKKKLLGKRKQSQMNRLL 130

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g12550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYB36_ARATH9.4e-1771.67Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1[more]
RAX3_ARATH2.3e-1540.00Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1[more]
RAX2_ARATH5.2e-1566.10Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1[more]
RAX1_ARATH1.5e-1450.00Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1[more]
MYB3_ARATH1.2e-1155.93Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1[more]
BLAST of Cp4.1LG02g12550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUZ6_CUCSA5.0e-1777.97Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109320 PE=4 SV=1[more]
A0A061GXE3_THECC3.3e-1656.82Myb domain protein 36 OS=Theobroma cacao GN=TCM_038898 PE=4 SV=1[more]
M1BM59_SOLTU3.3e-1658.14Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018750 PE=4 SV=1[more]
K4CBE6_SOLLC3.3e-1658.14Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A072V235_MEDTR4.3e-1675.00Myb transcription factor OS=Medicago truncatula GN=MTR_3g103570 PE=4 SV=1[more]
BLAST of Cp4.1LG02g12550 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37780.18.2e-1971.67 myb domain protein 87[more]
AT5G65790.11.4e-1871.67 myb domain protein 68[more]
AT5G57620.15.3e-1871.67 myb domain protein 36[more]
AT3G49690.11.3e-1640.00 myb domain protein 84[more]
AT2G36890.12.9e-1666.10 Duplicated homeodomain-like superfamily protein[more]
BLAST of Cp4.1LG02g12550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209713|gb|KGN64809.1|7.2e-1777.97hypothetical protein Csa_1G109320 [Cucumis sativus][more]
gi|659072274|ref|XP_008464692.1|7.2e-1777.97PREDICTED: transcription factor RAX2-like [Cucumis melo][more]
gi|848860862|ref|XP_012831262.1|2.1e-1642.66PREDICTED: transcription factor RAX3-like [Erythranthe guttata][more]
gi|698435519|ref|XP_009800575.1|2.8e-1676.27PREDICTED: transcription factor RAX2-like [Nicotiana sylvestris][more]
gi|970040700|ref|XP_015081741.1|4.7e-1658.14PREDICTED: transcription factor RAX1 [Solanum pennellii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeobox-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g12550.1Cp4.1LG02g12550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 4..36
score: 2.3
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 4..52
score: 1.09
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 1..22
score: 13
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 2..42
score: 4.0
NoneNo IPR availablePANTHERPTHR10641:SF603SUBFAMILY NOT NAMEDcoord: 2..42
score: 4.0
NoneNo IPR availablePFAMPF13921Myb_DNA-bind_6coord: 4..32
score: 5.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g12550CmaCh01G005130Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g12550MELO3C004947.2Melon (DHL92) v3.6.1cpemedB583
Cp4.1LG02g12550CsaV3_1G013560Cucumber (Chinese Long) v3cpecucB0657
Cp4.1LG02g12550CsGy1G013470Cucumber (Gy14) v2cgybcpeB090
Cp4.1LG02g12550CsGy3G031140Cucumber (Gy14) v2cgybcpeB386
Cp4.1LG02g12550Carg12289Silver-seed gourdcarcpeB0622
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g12550Cp4.1LG20g07170Cucurbita pepo (Zucchini)cpecpeB432
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g12550Cucurbita moschata (Rifu)cmocpeB205
Cp4.1LG02g12550Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g12550Wild cucumber (PI 183967)cpecpiB530
Cp4.1LG02g12550Cucumber (Chinese Long) v2cpecuB528
Cp4.1LG02g12550Bottle gourd (USVL1VR-Ls)cpelsiB453
Cp4.1LG02g12550Watermelon (Charleston Gray)cpewcgB500
Cp4.1LG02g12550Watermelon (97103) v1cpewmB548
Cp4.1LG02g12550Melon (DHL92) v3.5.1cpemeB490
Cp4.1LG02g12550Silver-seed gourdcarcpeB1489
Cp4.1LG02g12550Wax gourdcpewgoB0707
Cp4.1LG02g12550Wax gourdcpewgoB0695
Cp4.1LG02g12550Cucumber (Gy14) v1cgycpeB0774
Cp4.1LG02g12550Cucurbita maxima (Rimu)cmacpeB238