Cp4.1LG20g07170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g07170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb transcription factor
LocationCp4.1LG20 : 6402356 .. 6405062 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTTTTTTTTTTGGGAAATTTTGGAAGGTTTGAATAGGTGCGGGAAGAGTTGCAGATTGAGATGGCTCAACTATTTGAGGCCGAACATTAAACATGGAGGGTTCACTGATGAGGAAGATCGAATCATTTGTACTCTCTTTTCCACCATTGGAAGCAGGTTCGTTCTTCTTTGCATGGATTTCTTCATCCGGGTTACGAATAAACAATTAAACTTATCGTAACCTAGCTAATGGGTAACAGTTCAAGCTCACCGCTAACAGATATTGTCGTCTTTGAGTTTTCTCTTTTTGAGCTTGTATAAGGAGAGGTTTTCACACCCTTCTAAAGAATTCTTCATTCTCTTCCCCCAACCGATATGGGATCTCAAAATCCATCCCCCCCCTTCAGATCCCAGTGTTATCGCTGACACTCGTTTCTTTTTTCAATCGATGTGGGACCCCACCAAATCAACTCTCCTTCGGGGTCCAGCATCCTTGCTAGCACATCGTCTCATGTCCACTCCCCATCGGAGCTCATCCTCCTCGCTGGCAAATCGCCTGGTGTCTAGCTCTGATACCATTTGTAACAGCCCAAACCCACCGATAGTATATATTGTTCTTTTTGGACTTCCACTCAAGATTTTCTTAGAACGAGAGGTTTCTATATTCTTACAAAGGGTGTTTCGTTCTCATCTCATAGTTACAAATAAACAATGTAATTTATCGTAATGGTACACGAAAGAGTAAGAGTAAGAGTAAGCTTTTAAGTCTAGTAGTGATTGAAGAAATTTTTCGGTTCATAAACTTGTAGGTGGTCAATAATCGCGAGTCAATTACCCGGAAGAACGGACAACGATATAAAGAATCATTGGAATAGCAAGCTAAAGAGGAAGCTTATAGCAATGGAGAAGAAAGCTCAAATGGGCACCATGCCATCTTTTCATAACCATCATCAAATTTCATCATTTCCATCTCAACAACTCTACCAAGACTCCAACTTTTCAAGCTTTGAAACTCTCATTTCATCAATCCCATCAAATTGGTCAAACATCCAAACAAAAGAAACCAATAGCAATAGCTTAATGAACAATTCATTGATGTATAATAATAATAATCCAATGGTGAAACAAAGCTCATTAGGGTTTGGAAGTGAAGGGAGTACTTGTGATGGGAGCTACAATCAAATCACTCCTTCAGGAATAATGGGTTTTGATCAGAATCATAATTATTACTATGATCTTATGAATTATCAATCTCAGTGCTGCATTAATGGAGAAGCTGCTCAAGAACATCTTGGCCCCAACAGCTTCTACCAGTACTAGAAAAATGTAACTTTTTTTTTTGTTCTTGTTCTTGTTTTTTTTAGGTTAATTTGTTTTGTTTTGACAGCACTTGGGTAAAAGCTTCTTGTAATTTTGTGCACTTTGTTAATCAAGGTAATTAATGATGTGAGATTGTTGGTGCAGACTTTTTGTGTTTTTTACTGTTGCTGCTCCAAAATTCAAAGCTTGTCTTTTATGAAAACTAGAGAAGAGTGATTTGAAATTGAATAACACCAAAATTTGATGCTTAATCATTCTTAATTAACAATTCATTATGGAAAAAGTTGATATTGAAAAGATTTTGTTGGGTTTTATGTCAAAGTTGGTGTACAAAAATGTTTTCAACTAAAAGCCAAATTGAAGTTGGAGAAGTCAAATCCCTAAAACCCGAGCAAAAACGGATATGATGATAATTATTAGTTTCTCTGTTGGCAGATATTGTTTGCTTTGGTAAGTTACGTATCGTCGTTAGTCTCACAGTTTTAAAACACATCTGTCCAGGAGAGATTTCCATACTCTTGTAAGAAATGTTTCGTTTCCCTCTCCAACCGATGTAATTGATGTGGGATCTCACAATCTACCTCCTTTCAGAGTCTAGTATCCTCGTTGGCACAGCGCTAAGTGTTTTGCTTTGATACCAACACCCGCTAGCAGATATTGTTTGCTTTTGACTTGTTACTGTTACGTATTACCGTTAGCCTCACAGTTTTAAAACGTGTTTGCTAGAAAGAGGTTTTCACATCCTTATAAGAAATACTTTGTTCTCATCTAACCGATGTGGGATCTCACAATCTACCTCCCTTCTTAGCCCAATGTCTTCTCTGACACACCGTCCGATGTCTTGCTTTGATACCAACTGTTACGACCCAAGCCTACCCGCTAGCAGATATTGTCAGCTTTGGCCCATTACATATTACCGTCAGCATCACAATTTTCAAACGATCGGCTAGAGAGAGATTTCTACACCCTTACAAGAAATATTTCGTTCCCTTTTTTCAACAGATGTAACCGATGTTGAATCTCACAACAAAGACAAATAATAATGACATGGGTCATTGCCTTTTTTTTTAAACTATAGTATATATCAAGAGTGTTCAAGAAAACCCAATGTTCGGAAAGACTCAATCAACCCAACTTAACTGGTACGTTTTGGGTTGGATTATAAACCTACTTGGATTGAGTTAGATTCAAATAAATAAAAATTTTAAGAACGGAATTGATGGATGAATTCTCGTTCTCCTTGAAATTAGATTGGAGTTGAAGACCAATATCAAAATTACTTTAAAAAAAAATGAAAATCTTAAAGGCCATGCTGTTGTTGATATAGGTTACTGGTGGAGCTATGGAGCTATTGAAAAGACATTTCAAGCCCTGCAAAATCACTACACTTTGAAGAAATGA

mRNA sequence

ATGGGTTTGAATAGGTGCGGGAAGAGTTGCAGATTGAGATGGCTCAACTATTTGAGGCCGAACATTAAACATGGAGGGTTCACTGATGAGGAAGATCGAATCATTTGTACTCTCTTTTCCACCATTGGAAGCAGTGCTGCATTAATGGAGAAGCTGCTCAAGAACATCTTGGCCCCAACAGCTTCTACCAGTACTAGAAAAATGTTAATTTGTTTTGTTTTGACAGCACTTGGCTATGGAGCTATTGAAAAGACATTTCAAGCCCTGCAAAATCACTACACTTTGAAGAAATGA

Coding sequence (CDS)

ATGGGTTTGAATAGGTGCGGGAAGAGTTGCAGATTGAGATGGCTCAACTATTTGAGGCCGAACATTAAACATGGAGGGTTCACTGATGAGGAAGATCGAATCATTTGTACTCTCTTTTCCACCATTGGAAGCAGTGCTGCATTAATGGAGAAGCTGCTCAAGAACATCTTGGCCCCAACAGCTTCTACCAGTACTAGAAAAATGTTAATTTGTTTTGTTTTGACAGCACTTGGCTATGGAGCTATTGAAAAGACATTTCAAGCCCTGCAAAATCACTACACTTTGAAGAAATGA

Protein sequence

MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSSAALMEKLLKNILAPTASTSTRKMLICFVLTALGYGAIEKTFQALQNHYTLKK
Homology
[Close]
BLAST of Cp4.1LG20g07170 vs. Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-16
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          +GL RCGKSCRLRWLNYLRPNIKHGGF++EE+ IIC+L+ TIGS
Sbjct: 45 IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. Swiss-Prot
Match: MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          +GL RCGKSCRLRWLNYLRPNIKHGGF++EEDRII +L+ +IGS
Sbjct: 45 IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 2   GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSS----AALMEKLLKNIL 61
           GL RCGKSCRLRWLNYLRPNIKHG F++EEDRII +LF+ IGS     AA +     N +
Sbjct: 46  GLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDI 105

Query: 62  APTASTSTRKMLI 71
               +T  RK L+
Sbjct: 106 KNYWNTKLRKKLL 118

[Close]
BLAST of Cp4.1LG20g07170 vs. Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-14
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 2   GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSS----AALMEKLLKNIL 61
           GL RCGKSCRLRWLNYLRPNI+HG FT+EED II +LF++IGS     AA ++    N +
Sbjct: 46  GLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDI 105

Query: 62  APTASTSTRKMLI 71
               +T  +K LI
Sbjct: 106 KNYWNTKLKKKLI 118

[Close]
BLAST of Cp4.1LG20g07170 vs. Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.8e-12
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 

Query: 2  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSSAALM 50
          GL RCGKSCRLRW+NYLRP++K G FTD+ED+II  L S +G+  +L+
Sbjct: 45 GLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLI 92

[Close]
BLAST of Cp4.1LG20g07170 vs. TrEMBL
Match: A0A0A0LUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109320 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 2  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          GL RCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS
Sbjct: 46 GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. TrEMBL
Match: W5FHJ9_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-16
Identity = 37/44 (84.09%), Postives = 44/44 (100.00%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          +GLNRCGKSCRLRWLNYLRPNI+HGGFTDEEDR+IC+L+++IGS
Sbjct: 45 IGLNRCGKSCRLRWLNYLRPNIRHGGFTDEEDRLICSLYASIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. TrEMBL
Match: N1R0K2_AEGTA (Transcription factor RAX3 OS=Aegilops tauschii GN=F775_22184 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-16
Identity = 37/44 (84.09%), Postives = 44/44 (100.00%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          +GLNRCGKSCRLRWLNYLRPNI+HGGFTDEEDR+IC+L+++IGS
Sbjct: 45 IGLNRCGKSCRLRWLNYLRPNIRHGGFTDEEDRLICSLYASIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. TrEMBL
Match: A0A0L9VSM0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g089500 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.3e-16
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 2  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSSAALME 51
          GL RCGKSCRLRWLNYLRP+IKHGGFTDEED++IC L+STIGS   L++
Sbjct: 46 GLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVICNLYSTIGSRQVLLK 94

[Close]
BLAST of Cp4.1LG20g07170 vs. TrEMBL
Match: A0A059DFZ2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01670 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.3e-16
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 2  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          GL RCGKSCRLRWLNYLRPNIKHG FTDEEDRIICTL++TIGS
Sbjct: 46 GLRRCGKSCRLRWLNYLRPNIKHGEFTDEEDRIICTLYATIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. TAIR10
Match: AT4G37780.1 (AT4G37780.1 myb domain protein 87)

HSP 1 Score: 87.0 bits (214), Expect = 6.8e-18
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSSAALMEKLL 54
          +G+ RCGKSCRLRWLNYLRPN+KHGGFTDEED IIC+L+ TIGS  +++   L
Sbjct: 45 IGIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQL 97

[Close]
BLAST of Cp4.1LG20g07170 vs. TAIR10
Match: AT5G65790.1 (AT5G65790.1 myb domain protein 68)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          +GL RCGKSCRLRWLNYLRPNIKHGGF++EED IIC L+ TIGS
Sbjct: 45 IGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. TAIR10
Match: AT3G49690.1 (AT3G49690.1 myb domain protein 84)

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-17
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          +GL RCGKSCRLRWLNYLRPNIKHGGF++EE+ IIC+L+ TIGS
Sbjct: 45 IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. TAIR10
Match: AT5G57620.1 (AT5G57620.1 myb domain protein 36)

HSP 1 Score: 83.2 bits (204), Expect = 9.8e-17
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          +GL RCGKSCRLRWLNYLRPNIKHGGF++EEDRII +L+ +IGS
Sbjct: 45 IGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. TAIR10
Match: AT5G23000.1 (AT5G23000.1 myb domain protein 37)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-16
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 2   GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSS----AALMEKLLKNIL 61
           GL RCGKSCRLRWLNYLRPNIKHG F++EEDRII +LF+ IGS     AA +     N +
Sbjct: 46  GLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDI 105

Query: 62  APTASTSTRKMLI 71
               +T  RK L+
Sbjct: 106 KNYWNTKLRKKLL 118

[Close]
BLAST of Cp4.1LG20g07170 vs. NCBI nr
Match: gi|700209713|gb|KGN64809.1| (hypothetical protein Csa_1G109320 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.2e-17
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 2  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          GL RCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS
Sbjct: 46 GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. NCBI nr
Match: gi|659072274|ref|XP_008464692.1| (PREDICTED: transcription factor RAX2-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 3.2e-17
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 2  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          GL RCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS
Sbjct: 46 GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. NCBI nr
Match: gi|1009160558|ref|XP_015898416.1| (PREDICTED: transcription factor RAX2 [Ziziphus jujuba])

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 2  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          GL RCGKSCRLRWLNYLRPNIKHG FTDEEDRIICTLF+TIGS
Sbjct: 46 GLRRCGKSCRLRWLNYLRPNIKHGEFTDEEDRIICTLFATIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. NCBI nr
Match: gi|475584327|gb|EMT19750.1| (Transcription factor RAX3 [Aegilops tauschii])

HSP 1 Score: 91.7 bits (226), Expect = 7.8e-16
Identity = 37/44 (84.09%), Postives = 44/44 (100.00%), Query Frame = 1 

Query: 1  MGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          +GLNRCGKSCRLRWLNYLRPNI+HGGFTDEEDR+IC+L+++IGS
Sbjct: 45 IGLNRCGKSCRLRWLNYLRPNIRHGGFTDEEDRLICSLYASIGS 88

[Close]
BLAST of Cp4.1LG20g07170 vs. NCBI nr
Match: gi|702244059|ref|XP_010050853.1| (PREDICTED: transcription factor RAX2 [Eucalyptus grandis])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 2  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGS 45
          GL RCGKSCRLRWLNYLRPNIKHG FTDEEDRIICTL++TIGS
Sbjct: 46 GLRRCGKSCRLRWLNYLRPNIKHGEFTDEEDRIICTLYATIGS 88

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g07170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RAX3_ARATH4.6e-1679.55Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1[more]
MYB36_ARATH1.7e-1579.55Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1[more]
RAX1_ARATH1.1e-1457.53Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1[more]
RAX2_ARATH1.5e-1456.16Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1[more]
MYB6_ARATH6.8e-1262.50Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1[more]
BLAST of Cp4.1LG20g07170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUZ6_CUCSA2.2e-1797.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109320 PE=4 SV=1[more]
W5FHJ9_WHEAT5.4e-1684.09Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
N1R0K2_AEGTA5.4e-1684.09Transcription factor RAX3 OS=Aegilops tauschii GN=F775_22184 PE=4 SV=1[more]
A0A0L9VSM0_PHAAN9.3e-1677.55Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g089500 PE=4 SV=1[more]
A0A059DFZ2_EUCGR9.3e-1690.70Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01670 PE=4 SV=1[more]
BLAST of Cp4.1LG20g07170 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37780.16.8e-1869.81 myb domain protein 87[more]
AT5G65790.11.2e-1781.82 myb domain protein 68[more]
AT3G49690.12.6e-1779.55 myb domain protein 84[more]
AT5G57620.19.8e-1779.55 myb domain protein 36[more]
AT5G23000.16.3e-1657.53 myb domain protein 37[more]
BLAST of Cp4.1LG20g07170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209713|gb|KGN64809.1|3.2e-1797.67hypothetical protein Csa_1G109320 [Cucumis sativus][more]
gi|659072274|ref|XP_008464692.1|3.2e-1797.67PREDICTED: transcription factor RAX2-like [Cucumis melo][more]
gi|1009160558|ref|XP_015898416.1|6.0e-1693.02PREDICTED: transcription factor RAX2 [Ziziphus jujuba][more]
gi|475584327|gb|EMT19750.1|7.8e-1684.09Transcription factor RAX3 [Aegilops tauschii][more]
gi|702244059|ref|XP_010050853.1|1.3e-1590.70PREDICTED: transcription factor RAX2 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeobox-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g07170.1Cp4.1LG20g07170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 4..36
score: 7.1
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 4..45
score: 6.61
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 1..22
score: 13
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 2..44
score: 6.9
NoneNo IPR availablePANTHERPTHR10641:SF506SUBFAMILY NOT NAMEDcoord: 2..44
score: 6.9
NoneNo IPR availablePFAMPF13921Myb_DNA-bind_6coord: 4..32
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g07170MELO3C004947.2Melon (DHL92) v3.6.1cpemedB563
Cp4.1LG20g07170CsaV3_1G013560Cucumber (Chinese Long) v3cpecucB0635
Cp4.1LG20g07170CsGy1G013470Cucumber (Gy14) v2cgybcpeB082
Cp4.1LG20g07170Carg12289Silver-seed gourdcarcpeB0620
Cp4.1LG20g07170Carg02582Silver-seed gourdcarcpeB1278
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g07170Cp4.1LG02g12550Cucurbita pepo (Zucchini)cpecpeB432
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g07170Silver-seed gourdcarcpeB0469
Cp4.1LG20g07170Silver-seed gourdcarcpeB0470
Cp4.1LG20g07170Silver-seed gourdcarcpeB1488
Cp4.1LG20g07170Wax gourdcpewgoB0636
Cp4.1LG20g07170Cucurbita pepo (Zucchini)cpecpeB296
Cp4.1LG20g07170Cucurbita pepo (Zucchini)cpecpeB297
Cp4.1LG20g07170Cucurbita maxima (Rimu)cmacpeB236
Cp4.1LG20g07170Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g07170Cucurbita moschata (Rifu)cmocpeB203
Cp4.1LG20g07170Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g07170Wild cucumber (PI 183967)cpecpiB518
Cp4.1LG20g07170Cucumber (Chinese Long) v2cpecuB516
Cp4.1LG20g07170Bottle gourd (USVL1VR-Ls)cpelsiB429
Cp4.1LG20g07170Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g07170Watermelon (97103) v1cpewmB507
Cp4.1LG20g07170Melon (DHL92) v3.5.1cpemeB480