CmoCh13G002400 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G002400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Myb domain protein 36, putative
Location	Cmo_Chr13 : 1939787 .. 1941426 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGATCTCCTTGTTGTGATAAAGCTATTGTGAAGAAGGGGCCTTGGTCCCCTGAAGAAGATGCTAAGCTCAAGGCTTATATTATCAACCATGGCACTGCTGGGAATTGGATCTCTCTCCCTCAAAAAGCTGGTAATACTAACATTTTTTTCTACTTTCTGCGAGTTTCTGGTCGGGATCGTGGTTCTCTTTTTAGGGTTTTTAGGGTTTCAATCTCTTTCTCTAAATGGGTTTTTTTTTTTGGGGAAATTTTGGAAGGTTTGAATAGGTGCGGGAAGAGTTGCAGGTTGAGATGGCTCAACTATTTGAGGCCGAACATTAAACATGGAGGGTTCACTGATGAGGAAGATCGAATCATTTGTACTCTCTTTTCCACCATTGGAAGCAGGTTCGTTCTTCTTTGCATGGATTTCTTCATCCGGATTACGAATCGTAACCTAGCTAATGGGTAACGGTTCAAGCTCACCGCTAACAGATACTGTCGTCTTTGAGTTTTCTCTTTTTGGGCTTGTATAAGGAGAAGTTTTCACACCCTTCTAAAAAATTCTTCGTTCTCTTCCCCCAACTGAAAAATCCATCCCCCCTTCGGATCCCAGTGTTATCGCTGACACTCGTTTCTTTCTTCAATCGATGTGGGACTCCACCAAATCAACTCTCCTTCGGGGTTCAGCATCCTGTCTAGCACATCGTCTCATGTCCACTCCCCATCGGAGTTCATCCTCCTCGCTGGCAAATCGCCCGGTATCTAGCTCTGATATCATTTGTAACAGCCCAAACCCACCGATAGCAGATATTGTTTTCTTTGACTTCCACTCAAGATTTTTCTAGAACAAAGGGTTTCTACATTCTTACAAAGGGTGTTTCGTTCTCTTCTCATAGTTACAAATAAATAATTAAATTGATCGTAATGGTACACGAAAGAGTAAAAGTAAACTTTTAAGTCTAGTAGTGATTGAAGAAATTTTTCGGTTCATAAACTTGTAGGTGGTCGATAATCGCAAGTCAATTACCAGGAAGAACGGATAACGATATAAAGAATCATTGGAATAGCAAGCTAAAGAGGAAGCTTATAGCAATGGAGAAGAAAGCTCAAATGGGCACCATGCCATCTTTTCATAATCATCATCAAATTTCATCATTTCCATCTCAACAACTCTACCAAGACTCCAACTTTTCAAGCTTTGAAACTCTCATTTCATCAATCCCATCAAATTGGTCAAACATCCAAACAAAAGAAACCAATAGCAACAGCTTAATGAACAATTCATTGATGTATAATAATAATCCAATGGTGAAACAAAGCTCATTAGGGTTTGGAAGTGAAGGCAGTACTTGTGATGGGAGCTACAATCAAATCACTCCTTCAGGAATAATGGGTTTTGATCAGAATCATAATTATTACTATGATCTTATGAATTATCAATCTCAGTGCTGCATTGATGGAGAAGCTGCTCAAGAACATCTTGGCCCCAACAGCTTCTACCAGTACCAGTACTAAAATGCAACTTTTTTTTGTTATTGTTCTTGTTTTTTTTAGGTTAATTTGTTTTGTTTTGACAGCACTTGGGTAAAAGCTTCTTGTAATTTTGTGCACTTTGTTAATCAAGGTAATTAATGATGTGAGATTGTTGGTGCA

mRNA sequence

ATGGGAAGATCTCCTTGTTGTGATAAAGCTATTGTGAAGAAGGGGCCTTGGTCCCCTGAAGAAGATGCTAAGCTCAAGGCTTATATTATCAACCATGGCACTGCTGGGAATTGGATCTCTCTCCCTCAAAAAGCTGGTAATACTAACATTTTTTTCTACTTTCTGCGAGTTTCTGGTCGGGATCGTGGTTCTCTTTTTAGGGTTTTTAGGGTTTCAATCTCTTTCTCTAAATGGGTTTTTTTTTTTGGGGAAATTTTGGAAGGTTTGAATAGGTGCGGGAAGAGTTGCAGGTTGAGATGGCTCAACTATTTGAGGCCGAACATTAAACATGGAGGGTTCACTGATGAGGAAGATCGAATCATTTGTACTCTCTTTTCCACCATTGGAAGCAGGTGGTCGATAATCGCAAGTCAATTACCAGGAAGAACGGATAACGATATAAAGAATCATTGGAATAGCAAGCTAAAGAGGAAGCTTATAGCAATGGAGAAGAAAGCTCAAATGGGCACCATGCCATCTTTTCATAATCATCATCAAATTTCATCATTTCCATCTCAACAACTCTACCAAGACTCCAACTTTTCAAGCTTTGAAACTCTCATTTCATCAATCCCATCAAATTGGTCAAACATCCAAACAAAAGAAACCAATAGCAACAGCTTAATGAACAATTCATTGATGTATAATAATAATCCAATGGTGAAACAAAGCTCATTAGGGTTTGGAAGTGAAGGCAGTACTTGTGATGGGAGCTACAATCAAATCACTCCTTCAGGAATAATGGGTTTTGATCAGAATCATAATTATTACTATGATCTTATGAATTATCAATCTCAGTGCTGCATTGATGGAGAAGCTGCTCAAGAACATCTTGGCCCCAACAGCTTCTACCAGTACCAGTACTAAAATGCAACTTTTTTTTGTTATTGTTCTTGTTTTTTTTAGGTTAATTTGTTTTGTTTTGACAGCACTTGGGTAAAAGCTTCTTGTAATTTTGTGCACTTTGTTAATCAAGGTAATTAATGATGTGAGATTGTTGGTGCA

Coding sequence (CDS)

ATGGGAAGATCTCCTTGTTGTGATAAAGCTATTGTGAAGAAGGGGCCTTGGTCCCCTGAAGAAGATGCTAAGCTCAAGGCTTATATTATCAACCATGGCACTGCTGGGAATTGGATCTCTCTCCCTCAAAAAGCTGGTAATACTAACATTTTTTTCTACTTTCTGCGAGTTTCTGGTCGGGATCGTGGTTCTCTTTTTAGGGTTTTTAGGGTTTCAATCTCTTTCTCTAAATGGGTTTTTTTTTTTGGGGAAATTTTGGAAGGTTTGAATAGGTGCGGGAAGAGTTGCAGGTTGAGATGGCTCAACTATTTGAGGCCGAACATTAAACATGGAGGGTTCACTGATGAGGAAGATCGAATCATTTGTACTCTCTTTTCCACCATTGGAAGCAGGTGGTCGATAATCGCAAGTCAATTACCAGGAAGAACGGATAACGATATAAAGAATCATTGGAATAGCAAGCTAAAGAGGAAGCTTATAGCAATGGAGAAGAAAGCTCAAATGGGCACCATGCCATCTTTTCATAATCATCATCAAATTTCATCATTTCCATCTCAACAACTCTACCAAGACTCCAACTTTTCAAGCTTTGAAACTCTCATTTCATCAATCCCATCAAATTGGTCAAACATCCAAACAAAAGAAACCAATAGCAACAGCTTAATGAACAATTCATTGATGTATAATAATAATCCAATGGTGAAACAAAGCTCATTAGGGTTTGGAAGTGAAGGCAGTACTTGTGATGGGAGCTACAATCAAATCACTCCTTCAGGAATAATGGGTTTTGATCAGAATCATAATTATTACTATGATCTTATGAATTATCAATCTCAGTGCTGCATTGATGGAGAAGCTGCTCAAGAACATCTTGGCCCCAACAGCTTCTACCAGTACCAGTACTAA

Homology

[Close]

BLAST of CmoCh13G002400 vs. Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-33
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRWLNYLRPNIKHGGF++EE+ IIC+L+ TIGSRWSIIA+QLPGRTDNDI
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDI 105

Query: 148 KNHWNSKLKRKLI----------AMEKKAQMGTMPSFHNHHQI-SSFPSQQ 188
           KN+WN++LK+KLI           ME++  M  M   H   QI +SF  +Q
Sbjct: 106 KNYWNTRLKKKLINKQRKELQEACMEQQEMMVMMKRQHQQQQIQTSFMMRQ 156

[Close]

BLAST of CmoCh13G002400 vs. Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.7e-32
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 78  WVFFFGEILEGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIAS 137
           W+ F   +  GL RCGKSCRLRWLNYLRPNIKHG F++EEDRII +LF+ IGSRWSIIA+
Sbjct: 38  WISF--PLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAA 97

Query: 138 QLPGRTDNDIKNHWNSKLKRKLIAMEKKAQMGTMPS 174
            LPGRTDNDIKN+WN+KL++KL++    +    M S
Sbjct: 98  HLPGRTDNDIKNYWNTKLRKKLLSSSSDSSSSAMAS 131

[Close]

BLAST of CmoCh13G002400 vs. Swiss-Prot
Match: MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.8e-32
Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRWLNYLRPNIKHGGF++EEDRII +L+ +IGSRWSIIA+QLPGRTDNDI
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDI 105

Query: 148 KNHWNSKLKRKLIAMEKKAQMGTMPSFHNHHQISSFPSQQLYQDSNFSSFETLISSIPSN 207
           KN+WN+KLK+KL+  +K+       +    + +S+  + +  Q+ + S+ E L   +   
Sbjct: 106 KNYWNTKLKKKLLGRQKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHM--- 165

Query: 208 WSNIQTKETNSNSLMNNSLMY 229
              +Q  ++  +S  NN +++
Sbjct: 166 --QLQNLQSPFSSFYNNPILW 181

[Close]

BLAST of CmoCh13G002400 vs. Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.1e-31
Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRWLNYLRPNI+HG FT+EED II +LF++IGSRWS+IA+ L GRTDNDI
Sbjct: 46  GLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDI 105

Query: 148 KNHWNSKLKRKLIAMEKKAQMGTMPSFHNHHQISSFPSQQLYQDSNFSSFETLISSIPSN 207
           KN+WN+KLK+KLI     A M   P    HH ++   S      S+ S +  + S +P N
Sbjct: 106 KNYWNTKLKKKLI-----ATMAPPP----HHHLAIATSSSSASPSSSSHYNMINSLLPYN 165

Query: 208 WSNIQTKETNSNSLMNNSLMYNNNPMVKQSSLG 241
            S  Q    +   +M  ++M     +  Q  +G
Sbjct: 166 PSTNQLLTPHQGIMM--TMMGQQQQLFYQEDMG 187

[Close]

BLAST of CmoCh13G002400 vs. Swiss-Prot
Match: MYB80_ORYSJ (Transcription factor MYB80 OS=Oryza sativa subsp. japonica GN=MYB80 PE=2 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-28
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRW NYLRP++KHG FTD E++ I  L S +G+RWS+IA+QLPGRTDND+
Sbjct: 45  GLQRCGKSCRLRWTNYLRPDLKHGEFTDAEEQTIIKLHSVVGNRWSVIAAQLPGRTDNDV 104

Query: 148 KNHWNSKLKRKLIAM 163
           KNHWN+KLK+KL  M
Sbjct: 105 KNHWNTKLKKKLSGM 119

[Close]

BLAST of CmoCh13G002400 vs. TrEMBL
Match: A0A0A0LUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109320 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 4.5e-61
Identity = 152/247 (61.54%), Postives = 168/247 (68.02%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIA+QLPGRTDNDI
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDNDI 105

Query: 148 KNHWNSKLKRKLIAMEKKAQM---GTMPSFHNHHQ---ISSFPSQQL----------YQD 207
           KNHWNSKLKRKLI MEKKAQ+    T+PS HNHH     SSF SQ L          + D
Sbjct: 106 KNHWNSKLKRKLIEMEKKAQITTSRTIPSSHNHHHHQIFSSFSSQPLSSLINKHDDYFND 165

Query: 208 SNFS------------SFETLISSIPSNWSN-----------IQTKETNSNSLMNNSLMY 267
            N+S            SFE+LISSIPSNWSN           +QT+ET +N L +NSLMY
Sbjct: 166 INYSNYNLSSPPTTIKSFESLISSIPSNWSNNNNNISPSPCLVQTQET-TNLLSSNSLMY 225

Query: 268 N-NNPMVKQSS---LGFGSEG----STCDG-SYNQI-TPSGIMGFDQNHN-------YYY 277
           N +NP+V+      LGFGSEG    ST DG SY QI T SGIMGF  N+N       YYY
Sbjct: 226 NHHNPLVQMKESCLLGFGSEGSCSSSTSDGRSYTQINTTSGIMGFQNNNNNNNPNYYYYY 285

[Close]

BLAST of CmoCh13G002400 vs. TrEMBL
Match: C5XGT2_SORBI (Putative uncharacterized protein Sb03g031430 OS=Sorghum bicolor GN=Sb03g031430 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-52
Identity = 101/179 (56.42%), Postives = 129/179 (72.07%), Query Frame = 1


Query: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGNTNIFFYFLRVSGR 60
           MGR+PCCDK  VK+GPWSPEED  L++Y+ NHGT GNWI+LP KAG      Y++ + G 
Sbjct: 1   MGRAPCCDKTSVKRGPWSPEEDELLRSYVHNHGTGGNWIALPHKAG-----AYYIYIIGN 60

Query: 61  DRGSLFRVFRVSISFSKWVFFFGEILEGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRI 120
               L     V    +           GLNRCGKSCRLRWLNYLRP+IKHGG+T++EDRI
Sbjct: 61  WIDMLVVCMMVFSRCNSDGCACAR--AGLNRCGKSCRLRWLNYLRPDIKHGGYTEQEDRI 120

Query: 121 ICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLIAMEKKAQMGTMPSFHNHHQ 180
           IC+L+++IGSRWSIIAS+LPGRTDND+KN+WN+KLK+K IA  ++ Q      +++HHQ
Sbjct: 121 ICSLYNSIGSRWSIIASKLPGRTDNDVKNYWNTKLKKKAIANMQQQQ----EEYYHHHQ 168

[Close]

BLAST of CmoCh13G002400 vs. TrEMBL
Match: A0A0N7KQU7_ORYSJ (Os09g0431300 protein OS=Oryza sativa subsp. japonica GN=Os09g0431300 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 8.6e-52
Identity = 97/165 (58.79%), Postives = 118/165 (71.52%), Query Frame = 1


Query: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGNTNIFFYFLRVSGR 60
           MGR+PCCDKA VKKGPW+PEEDA LKAY+  HGT GNWI+LP K G              
Sbjct: 36  MGRAPCCDKATVKKGPWAPEEDAALKAYVDAHGTGGNWIALPHKIGTCR----------- 95

Query: 61  DRGSLFRVFRVSISFSKWVFFFGE-----ILEGLNRCGKSCRLRWLNYLRPNIKHGGFTD 120
              +  R   +++  S W+          +  GLNRCGKSCRLRWLNYLRPNI+HGGFT+
Sbjct: 96  ---ARRRRLEMTVLMSIWLIAHRPELVVVVYAGLNRCGKSCRLRWLNYLRPNIRHGGFTE 155

Query: 121 EEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLI 161
           +EDR+IC+L+  IGSRW+ IA+QLPGRTDNDIKN+WNSKLKR+L+
Sbjct: 156 DEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNYWNSKLKRRLL 186

[Close]

BLAST of CmoCh13G002400 vs. TrEMBL
Match: A0A0E0IJX3_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 8.6e-52
Identity = 97/165 (58.79%), Postives = 118/165 (71.52%), Query Frame = 1


Query: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGNTNIFFYFLRVSGR 60
           MGR+PCCDKA VKKGPW+PEEDA LKAY+  HGT GNWI+LP K G              
Sbjct: 1   MGRAPCCDKATVKKGPWAPEEDAALKAYVDAHGTGGNWIALPHKIGTCR----------- 60

Query: 61  DRGSLFRVFRVSISFSKWVFFFGE-----ILEGLNRCGKSCRLRWLNYLRPNIKHGGFTD 120
              +  R   +++  S W+          +  GLNRCGKSCRLRWLNYLRPNI+HGGFT+
Sbjct: 61  ---ARRRRLEMTVLMSIWLIAHRPELVVVVYAGLNRCGKSCRLRWLNYLRPNIRHGGFTE 120

Query: 121 EEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLI 161
           +EDR+IC+L+  IGSRW+ IA+QLPGRTDNDIKN+WNSKLKR+L+
Sbjct: 121 DEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNYWNSKLKRRLL 151

[Close]

BLAST of CmoCh13G002400 vs. TrEMBL
Match: A0A0E0B3A8_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 96/165 (58.18%), Postives = 118/165 (71.52%), Query Frame = 1


Query: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGNTNIFFYFLRVSGR 60
           MGR+PCCDKA VKKGPW+PEEDA L+AY+  HGT GNWI+LP K G              
Sbjct: 1   MGRAPCCDKATVKKGPWAPEEDAALRAYVDAHGTGGNWIALPHKIGTCR----------- 60

Query: 61  DRGSLFRVFRVSISFSKWVFFFGE-----ILEGLNRCGKSCRLRWLNYLRPNIKHGGFTD 120
              +  R   +++  S W+          +  GLNRCGKSCRLRWLNYLRPNI+HGGFT+
Sbjct: 61  ---ARRRRLEMTVLMSIWLIAHRPELVVVVYAGLNRCGKSCRLRWLNYLRPNIRHGGFTE 120

Query: 121 EEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLI 161
           +EDR+IC+L+  IGSRW+ IA+QLPGRTDNDIKN+WNSKLKR+L+
Sbjct: 121 DEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNYWNSKLKRRLL 151

[Close]

BLAST of CmoCh13G002400 vs. TAIR10
Match: AT4G37780.1 (AT4G37780.1 myb domain protein 87)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-37
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           G+ RCGKSCRLRWLNYLRPN+KHGGFTDEED IIC+L+ TIGSRWSIIASQLPGRTDNDI
Sbjct: 46  GIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDI 105

Query: 148 KNHWNSKLKRKLIAMEKKA---------QMGTMPSFHNHHQISSFPSQQLYQDSNFSSFE 205
           KN+WN++LK+KL++ + KA         + GT  S  + +QI      Q++ D N  S +
Sbjct: 106 KNYWNTRLKKKLLSKQGKAFHQQLNVKFERGTTSSSSSQNQI------QIFHDENTKSNQ 165

[Close]

BLAST of CmoCh13G002400 vs. TAIR10
Match: AT4G01680.2 (AT4G01680.2 myb domain protein 55)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-36
Identity = 75/159 (47.17%), Postives = 98/159 (61.64%), Query Frame = 1


Query: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGNTNIFFYFLRVSGR 60
           MGR  CC K  ++KG WSPEED KL  YI  +G  G W S+P++AG     F F+++   
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGH-GCWSSVPKQAGT----FLFIQI--- 60

Query: 61  DRGSLFRVFRVSISFSKWVFFFGEILEGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRI 120
                                   +L GL RCGKSCRLRW+NYLRP++K G F+ +E+ +
Sbjct: 61  -----------------------HLLFGLQRCGKSCRLRWINYLRPDLKRGAFSQDEENL 120

Query: 121 ICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKL 160
           I  L + +G+RWS IA+QLPGRTDN+IKN WNS LK+KL
Sbjct: 121 IIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 128

[Close]

BLAST of CmoCh13G002400 vs. TAIR10
Match: AT5G65790.1 (AT5G65790.1 myb domain protein 68)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 61/78 (78.21%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRWLNYLRPNIKHGGF++EED IIC L+ TIGSRWSIIA+QLPGRTDNDI
Sbjct: 46  GLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDI 105

Query: 148 KNHWNSKLKRKLIAMEKK 166
           KN+WN++LK+KL+  ++K
Sbjct: 106 KNYWNTRLKKKLLNKQRK 123

[Close]

BLAST of CmoCh13G002400 vs. TAIR10
Match: AT3G49690.1 (AT3G49690.1 myb domain protein 84)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-34
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRWLNYLRPNIKHGGF++EE+ IIC+L+ TIGSRWSIIA+QLPGRTDNDI
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDI 105

Query: 148 KNHWNSKLKRKLI----------AMEKKAQMGTMPSFHNHHQI-SSFPSQQ 188
           KN+WN++LK+KLI           ME++  M  M   H   QI +SF  +Q
Sbjct: 106 KNYWNTRLKKKLINKQRKELQEACMEQQEMMVMMKRQHQQQQIQTSFMMRQ 156

[Close]

BLAST of CmoCh13G002400 vs. TAIR10
Match: AT5G23000.1 (AT5G23000.1 myb domain protein 37)

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-33
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 78  WVFFFGEILEGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIAS 137
           W+ F   +  GL RCGKSCRLRWLNYLRPNIKHG F++EEDRII +LF+ IGSRWSIIA+
Sbjct: 38  WISF--PLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAA 97

Query: 138 QLPGRTDNDIKNHWNSKLKRKLIAMEKKAQMGTMPS 174
            LPGRTDNDIKN+WN+KL++KL++    +    M S
Sbjct: 98  HLPGRTDNDIKNYWNTKLRKKLLSSSSDSSSSAMAS 131

[Close]

BLAST of CmoCh13G002400 vs. NCBI nr
Match: gi|700209713|gb|KGN64809.1| (hypothetical protein Csa_1G109320 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 6.5e-61
Identity = 152/247 (61.54%), Postives = 168/247 (68.02%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIA+QLPGRTDNDI
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDNDI 105

Query: 148 KNHWNSKLKRKLIAMEKKAQM---GTMPSFHNHHQ---ISSFPSQQL----------YQD 207
           KNHWNSKLKRKLI MEKKAQ+    T+PS HNHH     SSF SQ L          + D
Sbjct: 106 KNHWNSKLKRKLIEMEKKAQITTSRTIPSSHNHHHHQIFSSFSSQPLSSLINKHDDYFND 165

Query: 208 SNFS------------SFETLISSIPSNWSN-----------IQTKETNSNSLMNNSLMY 267
            N+S            SFE+LISSIPSNWSN           +QT+ET +N L +NSLMY
Sbjct: 166 INYSNYNLSSPPTTIKSFESLISSIPSNWSNNNNNISPSPCLVQTQET-TNLLSSNSLMY 225

Query: 268 N-NNPMVKQSS---LGFGSEG----STCDG-SYNQI-TPSGIMGFDQNHN-------YYY 277
           N +NP+V+      LGFGSEG    ST DG SY QI T SGIMGF  N+N       YYY
Sbjct: 226 NHHNPLVQMKESCLLGFGSEGSCSSSTSDGRSYTQINTTSGIMGFQNNNNNNNPNYYYYY 285

[Close]

BLAST of CmoCh13G002400 vs. NCBI nr
Match: gi|659072274|ref|XP_008464692.1| (PREDICTED: transcription factor RAX2-like [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 129/211 (61.14%), Postives = 145/211 (68.72%), Query Frame = 1


Query: 88  GLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDI 147
           GL RCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIA+QLPGRTDNDI
Sbjct: 46  GLKRCGKSCRLRWLNYLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDNDI 105

Query: 148 KNHWNSKLKRKLIAMEKKAQM-GTMPSFHNHHQ----ISSFPSQQL----------YQDS 207
           KNHWNSKLKRKLI MEKKAQ+  T+PS  NHH      SSF SQ L          + D 
Sbjct: 106 KNHWNSKLKRKLIEMEKKAQITTTIPSSQNHHHHHQTFSSFSSQPLSSLINKHDDYFNDI 165

Query: 208 NFS--------------SFETLISSIPSNWSN-----------IQTKETNSNSLMNNSLM 255
           N+S              SFE+LISSIPSNWSN           +QT+ET +N L +NSLM
Sbjct: 166 NYSNYNLSSPPSTTTIKSFESLISSIPSNWSNNNNNISHSPCLVQTQET-TNLLSSNSLM 225

[Close]

BLAST of CmoCh13G002400 vs. NCBI nr
Match: gi|242054031|ref|XP_002456161.1| (hypothetical protein SORBIDRAFT_03g031430 [Sorghum bicolor])

HSP 1 Score: 213.8 bits (543), Expect = 4.2e-52
Identity = 101/179 (56.42%), Postives = 129/179 (72.07%), Query Frame = 1


Query: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGNTNIFFYFLRVSGR 60
           MGR+PCCDK  VK+GPWSPEED  L++Y+ NHGT GNWI+LP KAG      Y++ + G 
Sbjct: 1   MGRAPCCDKTSVKRGPWSPEEDELLRSYVHNHGTGGNWIALPHKAG-----AYYIYIIGN 60

Query: 61  DRGSLFRVFRVSISFSKWVFFFGEILEGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRI 120
               L     V    +           GLNRCGKSCRLRWLNYLRP+IKHGG+T++EDRI
Sbjct: 61  WIDMLVVCMMVFSRCNSDGCACAR--AGLNRCGKSCRLRWLNYLRPDIKHGGYTEQEDRI 120

Query: 121 ICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLIAMEKKAQMGTMPSFHNHHQ 180
           IC+L+++IGSRWSIIAS+LPGRTDND+KN+WN+KLK+K IA  ++ Q      +++HHQ
Sbjct: 121 ICSLYNSIGSRWSIIASKLPGRTDNDVKNYWNTKLKKKAIANMQQQQ----EEYYHHHQ 168

[Close]

BLAST of CmoCh13G002400 vs. NCBI nr
Match: gi|937933295|dbj|BAT08210.1| (Os09g0431300 [Oryza sativa Japonica Group])

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 97/165 (58.79%), Postives = 118/165 (71.52%), Query Frame = 1


Query: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGNTNIFFYFLRVSGR 60
           MGR+PCCDKA VKKGPW+PEEDA LKAY+  HGT GNWI+LP K G              
Sbjct: 36  MGRAPCCDKATVKKGPWAPEEDAALKAYVDAHGTGGNWIALPHKIGTCR----------- 95

Query: 61  DRGSLFRVFRVSISFSKWVFFFGE-----ILEGLNRCGKSCRLRWLNYLRPNIKHGGFTD 120
              +  R   +++  S W+          +  GLNRCGKSCRLRWLNYLRPNI+HGGFT+
Sbjct: 96  ---ARRRRLEMTVLMSIWLIAHRPELVVVVYAGLNRCGKSCRLRWLNYLRPNIRHGGFTE 155

Query: 121 EEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLI 161
           +EDR+IC+L+  IGSRW+ IA+QLPGRTDNDIKN+WNSKLKR+L+
Sbjct: 156 DEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNYWNSKLKRRLL 186

[Close]

BLAST of CmoCh13G002400 vs. NCBI nr
Match: gi|475522453|gb|EMT06748.1| (Transcription factor RAX1 [Aegilops tauschii])

HSP 1 Score: 187.2 bits (474), Expect = 4.2e-44
Identity = 119/294 (40.48%), Postives = 147/294 (50.00%), Query Frame = 1


Query: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGNTNIFFYFLRVSGR 60
           MGR+PCCDK  VKKGPWSPEED KLK YI  +GT GNWI+LP KA           VSG 
Sbjct: 1   MGRAPCCDKGSVKKGPWSPEEDRKLKDYIHTNGTGGNWIALPTKAD----------VSGL 60

Query: 61  DRGSLFRVFRVSISFSKWVFFFGEILEGLNRCGKSCRLRWLNYLRPNIKHGGFTDEEDRI 120
            R                              GKSCRLRWLNYLRPNIKHG F+DEEDR+
Sbjct: 61  KRC-----------------------------GKSCRLRWLNYLRPNIKHGDFSDEEDRV 120

Query: 121 ICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRK-----LIAMEKKAQMGTMP--- 180
           IC LF+ IGSRWSIIA+QLPGRTDND+KN+WN+KLK+K     + A     Q G+ P   
Sbjct: 121 ICALFAAIGSRWSIIAAQLPGRTDNDVKNYWNTKLKKKQLHLLIAAAAHGQQYGSRPPAP 180

Query: 181 -----SFHNHHQISSF----------------PSQQLYQDSNFSSFET----------LI 240
                  H+HH  S+                   QQ    S+FSS +           L 
Sbjct: 181 PFAPEQQHHHHTSSTSIASLGQLLMFGGRGGDQQQQQQYTSSFSSVDISNNTSAAAVGLQ 240

Query: 241 SSIPSNWSNIQTKETNSNSLM---------NNSLMYNNNPMVKQSSLGFGSEGS 247
            S        Q +E  +N+L+         N+ + Y ++ M+  S   F  +G+
Sbjct: 241 ESFMFGGLQFQQQEEETNNLLSPPAASSSGNDIMTYEHHEMISPSGFFFYGDGA 255

The following BLAST results are available for this feature:

BLAST of CmoCh13G002400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAX3_ARATH	2.6e-33	63.06	Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1	[more]
RAX1_ARATH	3.7e-32	64.58	Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1	[more]
MYB36_ARATH	4.8e-32	49.65	Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1	[more]
RAX2_ARATH	9.1e-31	48.37	Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1	[more]
MYB80_ORYSJ	1.1e-28	70.67	Transcription factor MYB80 OS=Oryza sativa subsp. japonica GN=MYB80 PE=2 SV=2	[more]

BLAST of CmoCh13G002400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUZ6_CUCSA	4.5e-61	61.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109320 PE=4 SV=1	[more]
C5XGT2_SORBI	2.9e-52	56.42	Putative uncharacterized protein Sb03g031430 OS=Sorghum bicolor GN=Sb03g031430 P...	[more]
A0A0N7KQU7_ORYSJ	8.6e-52	58.79	Os09g0431300 protein OS=Oryza sativa subsp. japonica GN=Os09g0431300 PE=4 SV=1	[more]
A0A0E0IJX3_ORYNI	8.6e-52	58.79	Uncharacterized protein OS=Oryza nivara PE=4 SV=1	[more]
A0A0E0B3A8_9ORYZ	1.9e-51	58.18	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]

BLAST of CmoCh13G002400 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37780.1	2.4e-37	58.73	myb domain protein 87	[more]
AT4G01680.2	1.2e-36	47.17	myb domain protein 55	[more]
AT5G65790.1	1.1e-34	78.21	myb domain protein 68	[more]
AT3G49690.1	1.4e-34	63.06	myb domain protein 84	[more]
AT5G23000.1	2.1e-33	64.58	myb domain protein 37	[more]

BLAST of CmoCh13G002400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209713\|gb\|KGN64809.1\|	6.5e-61	61.54	hypothetical protein Csa_1G109320 [Cucumis sativus]	[more]
gi\|659072274\|ref\|XP_008464692.1\|	1.3e-53	61.14	PREDICTED: transcription factor RAX2-like [Cucumis melo]	[more]
gi\|242054031\|ref\|XP_002456161.1\|	4.2e-52	56.42	hypothetical protein SORBIDRAFT_03g031430 [Sorghum bicolor]	[more]
gi\|937933295\|dbj\|BAT08210.1\|	1.2e-51	58.79	Os09g0431300 [Oryza sativa Japonica Group]	[more]
gi\|475522453\|gb\|EMT06748.1\|	4.2e-44	40.48	Transcription factor RAX1 [Aegilops tauschii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002400.1	CmoCh13G002400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 111..153 score: 4.0
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..106 score: 1.0E-6coord: 109..157 score: 6.7
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 112..160 score: 5.1E-23coord: 91..111 score: 3.0E-22coord: 15..47 score: 3.0
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 10..44 score: 6.58E-5coord: 90..161 score: 3.96
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 9..104 score: 7
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 105..159 score: 22
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..46 score: 1.7E-97coord: 89..278 score: 1.7
None	No IPR available	PANTHER	PTHR10641:SF506	SUBFAMILY NOT NAMED	coord: 1..46 score: 1.7E-97coord: 89..278 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G002400	CmaCh13G002390	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G002400	CmaCh01G005130	Cucurbita maxima (Rimu)	cmacmoB458
CmoCh13G002400	Cla005093	Watermelon (97103) v1	cmowmB173
CmoCh13G002400	Csa1G109320	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G002400	MELO3C004947	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G002400	ClCG03G002780	Watermelon (Charleston Gray)	cmowcgB184
CmoCh13G002400	CSPI01G13370	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G002400	Lsi03G000120	Bottle gourd (USVL1VR-Ls)	cmolsiB203
CmoCh13G002400	MELO3C004947.2	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G002400	CsaV3_1G013560	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G002400	Cla97C03G053830	Watermelon (97103) v2	cmowmbB209
CmoCh13G002400	CsGy1G013470	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G002400	Carg12289	Silver-seed gourd	carcmoB0594

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G002400	CmoCh01G005450	Cucurbita moschata (Rifu)	cmocmoB173

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G002400	Wax gourd	cmowgoB0259
CmoCh13G002400	Cucurbita moschata (Rifu)	cmocmoB179
CmoCh13G002400	Cucurbita pepo (Zucchini)	cmocpeB192
CmoCh13G002400	Cucurbita pepo (Zucchini)	cmocpeB203
CmoCh13G002400	Cucurbita pepo (Zucchini)	cmocpeB205
CmoCh13G002400	Bottle gourd (USVL1VR-Ls)	cmolsiB185
CmoCh13G002400	Melon (DHL92) v3.6.1	cmomedB200
CmoCh13G002400	Silver-seed gourd	carcmoB0458
CmoCh13G002400	Silver-seed gourd	carcmoB1435
CmoCh13G002400	Cucumber (Chinese Long) v3	cmocucB0257
CmoCh13G002400	Watermelon (97103) v2	cmowmbB208