Carg08773 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08773
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Calcium-binding EF-hand
Location	Cucurbita_argyrosperma_scaffold_057 : 953333 .. 953605 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGAAAAGCAAAACGTACCAGCCCAGGCCGAAGCTATCAAGAGAGCAGCTAAGCGTAATCTTCCGAAACCACGACGGCGATGGCGACGGCCGTCTAAGCACCACCGAGCTCACTGCAGCTTTCAGGTACATCGGCGCATTTCTTCCGTCCTACAGAGCTCTCCACGCTCTCCTTCACACCGATTCCGATGGAGATGGATTCATCGGCGAGAAGGATTTCGAATTGCTCGTCAATTATGCCGAGAAACGCAAATACACCGTCATTTGA

mRNA sequence

ATGGCAAGGAAAAGCAAAACGTACCAGCCCAGGCCGAAGCTATCAAGAGAGCAGCTAAGCGTAATCTTCCGAAACCACGACGGCGATGGCGACGGCCGTCTAAGCACCACCGAGCTCACTGCAGCTTTCAGGTACATCGGCGCATTTCTTCCGTCCTACAGAGCTCTCCACGCTCTCCTTCACACCGATTCCGATGGAGATGGATTCATCGGCGAGAAGGATTTCGAATTGCTCGTCAATTATGCCGAGAAACGCAAATACACCGTCATTTGA

Coding sequence (CDS)

ATGGCAAGGAAAAGCAAAACGTACCAGCCCAGGCCGAAGCTATCAAGAGAGCAGCTAAGCGTAATCTTCCGAAACCACGACGGCGATGGCGACGGCCGTCTAAGCACCACCGAGCTCACTGCAGCTTTCAGGTACATCGGCGCATTTCTTCCGTCCTACAGAGCTCTCCACGCTCTCCTTCACACCGATTCCGATGGAGATGGATTCATCGGCGAGAAGGATTTCGAATTGCTCGTCAATTATGCCGAGAAACGCAAATACACCGTCATTTGA

Protein sequence

MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

Homology

[Close]

BLAST of Carg08773 vs. NCBI nr
Match: KGN55185.1 (hypothetical protein Csa_4G639730 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 73/90 (81.11%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALL 60
          M+RKSK Y PR KLSREQL +IFRNHD D DGRLSTTELT AFRYIGAFLP+YRA HALL
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 HTDSDGDGFIGEKDFELLVNYAEKRKYTVI 91
          H DSD DGFIGEKDFE LVNYAE+R+YT+I
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]

BLAST of Carg08773 vs. NCBI nr
Match: POF10332.1 (calcium-binding allergen ole e 8 [Quercus suber])

HSP 1 Score: 87.0 bits (214), Expect = 3.5e-14
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1  MARKSKTYQPRPKL-SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHAL 60
          M RK   Y+P   L +++QL  +F++HD DGDG+LS  EL  AF+Y+G+   SYR   AL
Sbjct: 1  MGRKGTVYKPTSVLYTKDQLMNVFKSHDADGDGKLSREELKKAFKYLGSRWCSYRTEQAL 60

Query: 61 LHTDSDGDGFIGEKDFELLVNYAEKRKYTVI 91
            TD++ DG+I EK+ E LV+Y  +R+YT++
Sbjct: 61 RCTDTNDDGYIDEKELEKLVDYTLERQYTIV 91

[Close]

BLAST of Carg08773 vs. NCBI nr
Match: XP_022144349.1 (calmodulin-like protein 5 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 1  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALL 60
          M  K    +P  KL RE++  IFR HD +GDG LS  EL+ AF  +GA LP YRA+  +L
Sbjct: 1  MTHKCVKKKPSIKLLREEVKAIFRAHDINGDGHLSIKELSRAFGSLGALLPLYRAVCGIL 60

Query: 61 HTDSDGDGFIGEKDFELLVNYAEKRKYTVI 91
            D+DGDG I +++ E +V+YA K KY +I
Sbjct: 61 AADADGDGLITDEELEKVVDYAVKCKYDII 90

[Close]

BLAST of Carg08773 vs. NCBI nr
Match: KGN62515.1 (hypothetical protein Csa_2G358860 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 13 KLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGE 72
          KL +E++  +FR HD +GDGRLS  EL+ AF   GAF P YRA   L   D DGDGFI E
Sbjct: 14 KLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGFISE 73

Query: 73 KDFELLVNYAEKRKYTVI 91
          ++ + +V+YA K KY ++
Sbjct: 74 QELDKVVDYAIKCKYNLL 91

[Close]

BLAST of Carg08773 vs. NCBI nr
Match: XP_004152805.1 (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 6.5e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 11  RPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFI 70
           R +LSRE +  IFR HD DGDGRLS  E+  AF   G+ LP Y+A + + H D +GDGFI
Sbjct: 88  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 147

Query: 71  GEKDFELLVNYAEK 85
            E++ + LV+YA+K
Sbjct: 148 EEEELDKLVDYAQK 161

[Close]

BLAST of Carg08773 vs. TAIR10
Match: AT3G50770.1 (calmodulin-like 41)

HSP 1 Score: 51.2 bits (121), Expect = 3.8e-07
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 15  SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKD 74
           S+E+L  +F + D DGDG++S  EL   F  +G ++    A  A+   D+D DG +G +D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 75  F 76
           F
Sbjct: 121 F 121

[Close]

BLAST of Carg08773 vs. TAIR10
Match: AT1G76650.1 (calmodulin-like 38)

HSP 1 Score: 45.4 bits (106), Expect = 2.1e-05
Identity = 21/69 (30.43%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 18  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFEL 77
           +L  +F   D + DGR+S  EL  +F  +G  L    A+ A+  +D+DGDG +  ++F  
Sbjct: 43  ELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQ 102

Query: 78  LVNYAEKRK 87
           L+   ++ +
Sbjct: 103 LIKVDDEEE 111

[Close]

BLAST of Carg08773 vs. TAIR10
Match: AT1G76640.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 43.5 bits (101), Expect = 8.0e-05
Identity = 21/61 (34.43%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 19 LSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELL 78
          L  +F   D + DGR+S  EL  +F+ +G  +    A  A+  +D DGDG +   +F LL
Sbjct: 23 LEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALL 82

Query: 79 V 80
          +
Sbjct: 83 I 83

[Close]

BLAST of Carg08773 vs. TAIR10
Match: AT1G24620.1 (EF hand calcium-binding protein family)

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 20/63 (31.75%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 13 KLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGE 72
          K    +L  +F+  D +GDG++S+ EL A    +G  +P      A+   D  GDG+I  
Sbjct: 32 KTEIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINF 91

Query: 73 KDF 76
          ++F
Sbjct: 92 EEF 94

[Close]

BLAST of Carg08773 vs. TAIR10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 20/62 (32.26%), Postives = 30/62 (48.39%), Query Frame = 0


Query: 17 EQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFE 76
          E+L  +F   D +GDG++S  EL   F+ +G           L   D+D DG+I   +F 
Sbjct: 22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFS 81

Query: 77 LL 79
           L
Sbjct: 82 TL 83

[Close]

BLAST of Carg08773 vs. Swiss-Prot
Match: sp|Q8L3R2|CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 6.9e-06
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 15  SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKD 74
           S+E+L  +F + D DGDG++S  EL   F  +G ++    A  A+   D+D DG +G +D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 75  F 76
           F
Sbjct: 121 F 121

[Close]

BLAST of Carg08773 vs. Swiss-Prot
Match: sp|Q39419|POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 10 PRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGF 69
          P+ K  RE+   IF+  D +GDG++S  EL  A + +G+  P     H +   D+DGDGF
Sbjct: 6  PQDKAERER---IFKRFDANGDGKISAAELGEALKTLGSITPD-EVKHMMAEIDTDGDGF 65

Query: 70 IGEKDF 76
          I  ++F
Sbjct: 66 ISFQEF 67

[Close]

BLAST of Carg08773 vs. Swiss-Prot
Match: sp|Q0DJV6|CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 GN=CML18 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 21/58 (36.21%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 18 QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF 76
          +L  +FR +D +GDG++S  EL +  R +GA L        +   DSD DGF+   +F
Sbjct: 5  ELEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEF 62

[Close]

BLAST of Carg08773 vs. Swiss-Prot
Match: sp|O81701|POLC4_ALNGL (Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 21/54 (38.89%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 22 IFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF 76
          IF+  D +GDG++S +EL  A + +G+  P     H +   D+DGDGFI  ++F
Sbjct: 15 IFKCFDANGDGKISASELGDALKTLGSVTPD-EVKHMMAEIDTDGDGFISFQEF 67

[Close]

BLAST of Carg08773 vs. Swiss-Prot
Match: sp|Q9SRE6|CML38_ARATH (Calcium-binding protein CML38 OS=Arabidopsis thaliana OX=3702 GN=CML38 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 21/69 (30.43%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 18  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFEL 77
           +L  +F   D + DGR+S  EL  +F  +G  L    A+ A+  +D+DGDG +  ++F  
Sbjct: 43  ELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQ 102

Query: 78  LVNYAEKRK 87
           L+   ++ +
Sbjct: 103 LIKVDDEEE 111

[Close]

BLAST of Carg08773 vs. TrEMBL
Match: tr|A0A0A0KZR6|A0A0A0KZR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.6e-34
Identity = 73/90 (81.11%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALL 60
          M+RKSK Y PR KLSREQL +IFRNHD D DGRLSTTELT AFRYIGAFLP+YRA HALL
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 HTDSDGDGFIGEKDFELLVNYAEKRKYTVI 91
          H DSD DGFIGEKDFE LVNYAE+R+YT+I
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]

BLAST of Carg08773 vs. TrEMBL
Match: tr|A0A2P4LY04|A0A2P4LY04_QUESU (Calcium-binding allergen ole e 8 OS=Quercus suber OX=58331 GN=CFP56_50060 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1  MARKSKTYQPRPKL-SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHAL 60
          M RK   Y+P   L +++QL  +F++HD DGDG+LS  EL  AF+Y+G+   SYR   AL
Sbjct: 1  MGRKGTVYKPTSVLYTKDQLMNVFKSHDADGDGKLSREELKKAFKYLGSRWCSYRTEQAL 60

Query: 61 LHTDSDGDGFIGEKDFELLVNYAEKRKYTVI 91
            TD++ DG+I EK+ E LV+Y  +R+YT++
Sbjct: 61 RCTDTNDDGYIDEKELEKLVDYTLERQYTIV 91

[Close]

BLAST of Carg08773 vs. TrEMBL
Match: tr|A0A0A0LKW4|A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 13 KLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGE 72
          KL +E++  +FR HD +GDGRLS  EL+ AF   GAF P YRA   L   D DGDGFI E
Sbjct: 14 KLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGFISE 73

Query: 73 KDFELLVNYAEKRKYTVI 91
          ++ + +V+YA K KY ++
Sbjct: 74 QELDKVVDYAIKCKYNLL 91

[Close]

BLAST of Carg08773 vs. TrEMBL
Match: tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 11 RPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFI 70
          R +LSRE +  IFR HD DGDGRLS  E+  AF   G+ LP Y+A + + H D +GDGFI
Sbjct: 7  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 66

Query: 71 GEKDFELLVNYAEK 85
           E++ + LV+YA+K
Sbjct: 67 EEEELDKLVDYAQK 80

[Close]

BLAST of Carg08773 vs. TrEMBL
Match: tr|A0A1J6IU85|A0A1J6IU85_NICAT (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_00311 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 14 LSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEK 73
          L+ EQL+ IF+ +D + DG LST EL AAFR +G+  P YRA+ AL   D +GDG I +K
Sbjct: 20 LTEEQLTNIFKAYDSNRDGYLSTEELRAAFRELGSIFPGYRAVRALHRVDRNGDGLIDKK 79

Query: 74 DFELLVNYAEKRKYTV 90
          + E LV YA KR Y++
Sbjct: 80 ELEQLVQYASKRGYSL 95

The following BLAST results are available for this feature:

BLAST of Carg08773 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55185.1	1.1e-33	81.11	hypothetical protein Csa_4G639730 [Cucumis sativus]	[more]
POF10332.1	3.5e-14	46.15	calcium-binding allergen ole e 8 [Quercus suber]	[more]
XP_022144349.1	1.3e-13	47.78	calmodulin-like protein 5 [Momordica charantia]	[more]
KGN62515.1	2.2e-13	50.00	hypothetical protein Csa_2G358860 [Cucumis sativus]	[more]
XP_004152805.1	6.5e-13	51.35	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]

BLAST of Carg08773 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G50770.1	3.8e-07	37.70	calmodulin-like 41	[more]
AT1G76650.1	2.1e-05	30.43	calmodulin-like 38	[more]
AT1G76640.1	8.0e-05	34.43	Calcium-binding EF-hand family protein	[more]
AT1G24620.1	1.0e-04	31.75	EF hand calcium-binding protein family	[more]
AT1G18210.1	1.4e-04	32.26	Calcium-binding EF-hand family protein	[more]

BLAST of Carg08773 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L3R2\|CML41_ARATH	6.9e-06	37.70	Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 ...	[more]
sp\|Q39419\|POLC4_BETPN	1.2e-05	37.88	Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1	[more]
sp\|Q0DJV6\|CML18_ORYSJ	2.2e-04	36.21	Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|O81701\|POLC4_ALNGL	2.2e-04	38.89	Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1	[more]
sp\|Q9SRE6\|CML38_ARATH	3.8e-04	30.43	Calcium-binding protein CML38 OS=Arabidopsis thaliana OX=3702 GN=CML38 PE=2 SV=1	[more]

BLAST of Carg08773 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZR6\|A0A0A0KZR6_CUCSA	7.6e-34	81.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1	[more]
tr\|A0A2P4LY04\|A0A2P4LY04_QUESU	2.3e-14	46.15	Calcium-binding allergen ole e 8 OS=Quercus suber OX=58331 GN=CFP56_50060 PE=4 S...	[more]
tr\|A0A0A0LKW4\|A0A0A0LKW4_CUCSA	1.5e-13	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1	[more]
tr\|A0A0A0LRC1\|A0A0A0LRC1_CUCSA	4.3e-13	51.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1	[more]
tr\|A0A1J6IU85\|A0A1J6IU85_NICAT	1.3e-12	51.32	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_00311 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08773-RA	Carg08773-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 1..84 e-value: 2.2E-9 score: 39.5
None	No IPR available	PANTHER	PTHR44455	FAMILY NOT NAMED	coord: 6..85
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 27..39
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 63..75
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 14..49 score: 11.975
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 63..85 score: 7.01
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 10..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08773	Cla022560	Watermelon (97103) v1	carwmB0101
Carg08773	Cla020682	Watermelon (97103) v1	carwmB0102
Carg08773	Csa2G359940	Cucumber (Chinese Long) v2	carcuB0110
Carg08773	Csa4G639730	Cucumber (Chinese Long) v2	carcuB0112
Carg08773	MELO3C016746	Melon (DHL92) v3.5.1	carmeB0108
Carg08773	MELO3C010876	Melon (DHL92) v3.5.1	carmeB0105
Carg08773	ClCG05G019800	Watermelon (Charleston Gray)	carwcgB0104
Carg08773	ClCG08G015790	Watermelon (Charleston Gray)	carwcgB0106
Carg08773	CSPI02G19270	Wild cucumber (PI 183967)	carcpiB0115
Carg08773	CSPI04G24010	Wild cucumber (PI 183967)	carcpiB0117
Carg08773	Cucsa.232790	Cucumber (Gy14) v1	carcgyB0124
Carg08773	Cucsa.123710	Cucumber (Gy14) v1	carcgyB0123
Carg08773	CmaCh12G005320	Cucurbita maxima (Rimu)	carcmaB0135
Carg08773	CmaCh01G018470	Cucurbita maxima (Rimu)	carcmaB0136
Carg08773	CmaCh05G001890	Cucurbita maxima (Rimu)	carcmaB0137
Carg08773	CmoCh12G004750	Cucurbita moschata (Rifu)	carcmoB0145
Carg08773	CmoCh05G001880	Cucurbita moschata (Rifu)	carcmoB0147
Carg08773	CmoCh09G002130	Cucurbita moschata (Rifu)	carcmoB0144
Carg08773	CmoCh01G019050	Cucurbita moschata (Rifu)	carcmoB0146
Carg08773	Lsi04G015700	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08773	Lsi08G014600	Bottle gourd (USVL1VR-Ls)	carlsiB096
Carg08773	Cp4.1LG06g01580	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08773	Cp4.1LG02g07030	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08773	Cp4.1LG11g01520	Cucurbita pepo (Zucchini)	carcpeB0152
Carg08773	Cp4.1LG07g05260	Cucurbita pepo (Zucchini)	carcpeB0155
Carg08773	CsGy2G019050	Cucumber (Gy14) v2	carcgybB0110
Carg08773	MELO3C016746.2	Melon (DHL92) v3.6.1	carmedB0110
Carg08773	MELO3C010876.2	Melon (DHL92) v3.6.1	carmedB0107
Carg08773	CsaV3_4G034250	Cucumber (Chinese Long) v3	carcucB0121
Carg08773	CsaV3_2G027960	Cucumber (Chinese Long) v3	carcucB0119
Carg08773	Cla97C05G101420	Watermelon (97103) v2	carwmbB0107
Carg08773	Cla97C08G159420	Watermelon (97103) v2	carwmbB0109
Carg08773	Bhi04G000312	Wax gourd	carwgoB0117
Carg08773	Bhi09G002739	Wax gourd	carwgoB0122

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08773	Carg11845	Silver-seed gourd	carcarB119
Carg08773	Carg10597	Silver-seed gourd	carcarB124

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08773	Cucurbita maxima (Rimu)	carcmaB0134