Carg10597 (gene) Silver-seed gourd

Overview
NameCarg10597
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCalcium-binding EF-hand family protein, putative
LocationCucurbita_argyrosperma_scaffold_031 : 150179 .. 150451 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGAAAAACAAGATGTCCCAGCCGAGGCCGAAGCTTTCCCGGGAGCAACTCAGCGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGCTTGAGCGCCACCGAGCTCACGGAAGCCTTCCGCTACATCGGCGCCTTTCTGCCGTCGTACAGAGCTCATCACGCTCTTCGTTACACGGATTCCGACAGGGATGGATTCATCGGCGAGAAGGATTTCGAATCGCTCGTCAATTATACCGAAAAACGACATTACACCATCGTTTGA

mRNA sequence

ATGGCAAGGAAAAACAAGATGTCCCAGCCGAGGCCGAAGCTTTCCCGGGAGCAACTCAGCGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGCTTGAGCGCCACCGAGCTCACGGAAGCCTTCCGCTACATCGGCGCCTTTCTGCCGTCGTACAGAGCTCATCACGCTCTTCGTTACACGGATTCCGACAGGGATGGATTCATCGGCGAGAAGGATTTCGAATCGCTCGTCAATTATACCGAAAAACGACATTACACCATCGTTTGA

Coding sequence (CDS)

ATGGCAAGGAAAAACAAGATGTCCCAGCCGAGGCCGAAGCTTTCCCGGGAGCAACTCAGCGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGCTTGAGCGCCACCGAGCTCACGGAAGCCTTCCGCTACATCGGCGCCTTTCTGCCGTCGTACAGAGCTCATCACGCTCTTCGTTACACGGATTCCGACAGGGATGGATTCATCGGCGAGAAGGATTTCGAATCGCTCGTCAATTATACCGAAAAACGACATTACACCATCGTTTGA

Protein sequence

MARKNKMSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV
Homology
[Close]
BLAST of Carg10597 vs. NCBI nr
Match: KGN55185.1 (hypothetical protein Csa_4G639730 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 0 

Query: 1  MARKNKMSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALR 60
          M+RK+K   PR KLSREQL +IFRNHD D DGRLS TELTEAFRYIGAFLP+YRA HAL 
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 YTDSDRDGFIGEKDFESLVNYTEKRHYTIV 91
          + DSDRDGFIGEKDFESLVNY E+R YTI+
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]
BLAST of Carg10597 vs. NCBI nr
Match: POF10332.1 (calcium-binding allergen ole e 8 [Quercus suber])

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-15
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 0 

Query: 1  MARKNKMSQPRPKL-SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHAL 60
          M RK  + +P   L +++QL  +F++HD DGDG+LS  EL +AF+Y+G+   SYR   AL
Sbjct: 1  MGRKGTVYKPTSVLYTKDQLMNVFKSHDADGDGKLSREELKKAFKYLGSRWCSYRTEQAL 60

Query: 61 RYTDSDRDGFIGEKDFESLVNYTEKRHYTIV 91
          R TD++ DG+I EK+ E LV+YT +R YTIV
Sbjct: 61 RCTDTNDDGYIDEKELEKLVDYTLERQYTIV 91

[Close]
BLAST of Carg10597 vs. NCBI nr
Match: XP_022144156.1 (probable calcium-binding protein CML15 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0 

Query: 5   NKMSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDS 64
           N+   P+ K SR Q+  IF  HD DGDG LS +EL +AF ++G+ +P Y+AH+ L + D 
Sbjct: 64  NEKKAPKIKFSRSQIKEIFMEHDIDGDGCLSVSELIKAFSFLGSVIPLYKAHYGLAFADD 123

Query: 65  DRDGFIGEKDFESLVNYTEK 85
           D DG I E++ + LV+Y EK
Sbjct: 124 DGDGLISEEELDKLVDYAEK 143

[Close]
BLAST of Carg10597 vs. NCBI nr
Match: XP_022951880.1 (calmodulin-like [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-13
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 13  KLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGE 72
           +LSR ++  IF  HD DGDG L+ +ELT+AF +IG+ LP Y+AH+ L Y D+D DG I E
Sbjct: 78  RLSRSEIRDIFLEHDIDGDGYLNVSELTKAFSFIGSMLPLYKAHYGLNYADADGDGRISE 137

Query: 73  KDFESLVNYTEK 85
           ++ E LV+Y E+
Sbjct: 138 EELEKLVDYAER 149

[Close]
BLAST of Carg10597 vs. NCBI nr
Match: XP_004152805.1 (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0 

Query: 11  RPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFI 70
           R +LSRE +  IFR HD DGDGRLS  E+ +AF   G+ LP Y+AH+ + + D + DGFI
Sbjct: 88  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 147

Query: 71  GEKDFESLVNYTEK 85
            E++ + LV+Y +K
Sbjct: 148 EEEELDKLVDYAQK 161

[Close]
BLAST of Carg10597 vs. TAIR10
Match: AT3G50770.1 (calmodulin-like 41)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-08
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 15  SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKD 74
           S+E+L  +F + D DGDG++SA EL   F  +G ++    A  A+   D+D DG +G +D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 75  FESLV 80
           F  L+
Sbjct: 121 FVGLM 125

[Close]
BLAST of Carg10597 vs. TAIR10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.2e-06
Identity = 21/62 (33.87%), Postives = 33/62 (53.23%), Query Frame = 0 

Query: 17 EQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFE 76
          E+L  +F   D +GDG++S  EL   F+ +G        +  L   D+DRDG+I   +F 
Sbjct: 22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFS 81

Query: 77 SL 79
          +L
Sbjct: 82 TL 83

[Close]
BLAST of Carg10597 vs. TAIR10
Match: AT1G76650.1 (calmodulin-like 38)

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-05
Identity = 21/67 (31.34%), Postives = 37/67 (55.22%), Query Frame = 0 

Query: 18  QLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFES 77
           +L  +F   D + DGR+S  EL ++F  +G  L    A  A+R +D+D DG +  ++F  
Sbjct: 43  ELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQ 102

Query: 78  LVNYTEK 85
           L+   ++
Sbjct: 103 LIKVDDE 109

[Close]
BLAST of Carg10597 vs. TAIR10
Match: AT1G76640.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 43.5 bits (101), Expect = 8.0e-05
Identity = 20/61 (32.79%), Postives = 34/61 (55.74%), Query Frame = 0 

Query: 19 LSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL 78
          L  +F   D + DGR+SA EL ++F+ +G  +    A  A++ +D D DG +   +F  L
Sbjct: 23 LEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALL 82

Query: 79 V 80
          +
Sbjct: 83 I 83

[Close]
BLAST of Carg10597 vs. TAIR10
Match: AT1G32250.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 40.8 bits (94), Expect = 5.2e-04
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 0 

Query: 15  SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKD 74
           + EQL  +FR  D DG+G ++A EL  +   +G  L        ++  DSD DG I  ++
Sbjct: 92  TEEQLLRLFRIFDTDGNGFITAAELAHSMAKLGHALTVAELTGMIKEADSDGDGRINFQE 151

Query: 75  FESLVN 81
           F   +N
Sbjct: 152 FAKAIN 157

[Close]
BLAST of Carg10597 vs. Swiss-Prot
Match: sp|Q8L3R2|CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 15  SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKD 74
           S+E+L  +F + D DGDG++SA EL   F  +G ++    A  A+   D+D DG +G +D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 75  FESLV 80
           F  L+
Sbjct: 121 FVGLM 125

[Close]
BLAST of Carg10597 vs. Swiss-Prot
Match: sp|Q0DJV6|CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 GN=CML18 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-05
Identity = 23/58 (39.66%), Postives = 33/58 (56.90%), Query Frame = 0 

Query: 18 QLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDF 76
          +L  +FR +D +GDG++SA EL    R +GA L        +   DSDRDGF+   +F
Sbjct: 5  ELEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEF 62

[Close]
BLAST of Carg10597 vs. Swiss-Prot
Match: sp|Q39419|POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-05
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 10 PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGF 69
          P+ K  RE+   IF+  D +GDG++SA EL EA + +G+  P     H +   D+D DGF
Sbjct: 6  PQDKAERER---IFKRFDANGDGKISAAELGEALKTLGSITPD-EVKHMMAEIDTDGDGF 65

Query: 70 IGEKDF 76
          I  ++F
Sbjct: 66 ISFQEF 67

[Close]
BLAST of Carg10597 vs. Swiss-Prot
Match: sp|Q9LE22|CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 21/62 (33.87%), Postives = 33/62 (53.23%), Query Frame = 0 

Query: 17 EQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFE 76
          E+L  +F   D +GDG++S  EL   F+ +G        +  L   D+DRDG+I   +F 
Sbjct: 22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFS 81

Query: 77 SL 79
          +L
Sbjct: 82 TL 83

[Close]
BLAST of Carg10597 vs. Swiss-Prot
Match: sp|O81701|POLC4_ALNGL (Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 21/54 (38.89%), Postives = 34/54 (62.96%), Query Frame = 0 

Query: 22 IFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDF 76
          IF+  D +GDG++SA+EL +A + +G+  P     H +   D+D DGFI  ++F
Sbjct: 15 IFKCFDANGDGKISASELGDALKTLGSVTPD-EVKHMMAEIDTDGDGFISFQEF 67

[Close]
BLAST of Carg10597 vs. TrEMBL
Match: tr|A0A0A0KZR6|A0A0A0KZR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 0 

Query: 1  MARKNKMSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALR 60
          M+RK+K   PR KLSREQL +IFRNHD D DGRLS TELTEAFRYIGAFLP+YRA HAL 
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 YTDSDRDGFIGEKDFESLVNYTEKRHYTIV 91
          + DSDRDGFIGEKDFESLVNY E+R YTI+
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]
BLAST of Carg10597 vs. TrEMBL
Match: tr|A0A2P4LY04|A0A2P4LY04_QUESU (Calcium-binding allergen ole e 8 OS=Quercus suber OX=58331 GN=CFP56_50060 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-15
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 0 

Query: 1  MARKNKMSQPRPKL-SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHAL 60
          M RK  + +P   L +++QL  +F++HD DGDG+LS  EL +AF+Y+G+   SYR   AL
Sbjct: 1  MGRKGTVYKPTSVLYTKDQLMNVFKSHDADGDGKLSREELKKAFKYLGSRWCSYRTEQAL 60

Query: 61 RYTDSDRDGFIGEKDFESLVNYTEKRHYTIV 91
          R TD++ DG+I EK+ E LV+YT +R YTIV
Sbjct: 61 RCTDTNDDGYIDEKELEKLVDYTLERQYTIV 91

[Close]
BLAST of Carg10597 vs. TrEMBL
Match: tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0 

Query: 11 RPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFI 70
          R +LSRE +  IFR HD DGDGRLS  E+ +AF   G+ LP Y+AH+ + + D + DGFI
Sbjct: 7  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 66

Query: 71 GEKDFESLVNYTEK 85
           E++ + LV+Y +K
Sbjct: 67 EEEELDKLVDYAQK 80

[Close]
BLAST of Carg10597 vs. TrEMBL
Match: tr|A0A2P5F8Q2|A0A2P5F8Q2_9ROSA (Parvalbumin OS=Trema orientalis OX=63057 GN=TorRG33x02_099130 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 10  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGF 69
           P    S  QL  +F++ D +GDGRLS  EL  AF  +G+F P +RA  ALR  D +RDGF
Sbjct: 30  PAVPYSEVQLKGVFKSSDANGDGRLSRQELRNAFASLGSFAPGWRACRALRRADKNRDGF 89

Query: 70  IGEKDFESLVNYTEKRHYTI 90
           + E + + LV Y  KR YTI
Sbjct: 90  VDEDELDYLVKYAAKRGYTI 109

[Close]
BLAST of Carg10597 vs. TrEMBL
Match: tr|A0A0A0LKW4|A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 13 KLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGE 72
          KL +E++  +FR HD +GDGRLS  EL+ AF   GAF P YRA   L   D D DGFI E
Sbjct: 14 KLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGFISE 73

Query: 73 KDFESLVNYTEKRHYTIV 91
          ++ + +V+Y  K  Y ++
Sbjct: 74 QELDKVVDYAIKCKYNLL 91

The following BLAST results are available for this feature:
BLAST of Carg10597 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55185.11.8e-3177.78hypothetical protein Csa_4G639730 [Cucumis sativus][more]
POF10332.14.1e-1549.45calcium-binding allergen ole e 8 [Quercus suber][more]
XP_022144156.12.9e-1346.25probable calcium-binding protein CML15 [Momordica charantia][more]
XP_022951880.15.0e-1351.39calmodulin-like [Cucurbita moschata][more]
XP_004152805.13.2e-1248.65PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
BLAST of Carg10597 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50770.12.6e-0838.46calmodulin-like 41[more]
AT1G18210.17.2e-0633.87Calcium-binding EF-hand family protein[more]
AT1G76650.13.6e-0531.34calmodulin-like 38[more]
AT1G76640.18.0e-0532.79Calcium-binding EF-hand family protein[more]
AT1G32250.15.2e-0433.33Calcium-binding EF-hand family protein[more]
BLAST of Carg10597 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8L3R2|CML41_ARATH4.8e-0738.46Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 ... [more]
sp|Q0DJV6|CML18_ORYSJ1.5e-0539.66Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|Q39419|POLC4_BETPN1.5e-0539.39Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1[more]
sp|Q9LE22|CML27_ARATH1.3e-0433.87Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 ... [more]
sp|O81701|POLC4_ALNGL3.8e-0438.89Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1[more]
BLAST of Carg10597 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZR6|A0A0A0KZR6_CUCSA1.2e-3177.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1[more]
tr|A0A2P4LY04|A0A2P4LY04_QUESU2.7e-1549.45Calcium-binding allergen ole e 8 OS=Quercus suber OX=58331 GN=CFP56_50060 PE=4 S... [more]
tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA2.1e-1248.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1[more]
tr|A0A2P5F8Q2|A0A2P5F8Q2_9ROSA1.8e-1147.50Parvalbumin OS=Trema orientalis OX=63057 GN=TorRG33x02_099130 PE=4 SV=1[more]
tr|A0A0A0LKW4|A0A0A0LKW4_CUCSA3.1e-1146.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10597-RACarg10597-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 17..78
e-value: 1.9E-7
score: 31.4
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 14..49
score: 12.393
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 63..85
score: 6.87
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 1..85
e-value: 3.3E-11
score: 45.4
NoneNo IPR availablePANTHERPTHR44455FAMILY NOT NAMEDcoord: 6..85
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 27..39
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 63..75
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 8..80

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10597Cla022560Watermelon (97103) v1carwmB0766
Carg10597Cla020682Watermelon (97103) v1carwmB0769
Carg10597Csa2G357350Cucumber (Chinese Long) v2carcuB0788
Carg10597Csa4G639730Cucumber (Chinese Long) v2carcuB0789
Carg10597MELO3C010876Melon (DHL92) v3.5.1carmeB0765
Carg10597MELO3C016745Melon (DHL92) v3.5.1carmeB0767
Carg10597ClCG05G019800Watermelon (Charleston Gray)carwcgB0748
Carg10597ClCG08G015790Watermelon (Charleston Gray)carwcgB0752
Carg10597CSPI04G24010Wild cucumber (PI 183967)carcpiB0807
Carg10597CSPI02G19140Wild cucumber (PI 183967)carcpiB0806
Carg10597Cucsa.232870Cucumber (Gy14) v1carcgyB0874
Carg10597CmaCh01G018470Cucurbita maxima (Rimu)carcmaB1069
Carg10597CmaCh12G005320Cucurbita maxima (Rimu)carcmaB1067
Carg10597CmoCh09G002130Cucurbita moschata (Rifu)carcmoB1040
Carg10597CmoCh01G019060Cucurbita moschata (Rifu)carcmoB1044
Carg10597CmoCh12G004750Cucurbita moschata (Rifu)carcmoB1042
Carg10597Lsi04G015710Bottle gourd (USVL1VR-Ls)carlsiB708
Carg10597Lsi08G014600Bottle gourd (USVL1VR-Ls)carlsiB710
Carg10597Cp4.1LG07g05350Cucurbita pepo (Zucchini)carcpeB1084
Carg10597Cp4.1LG11g01530Cucurbita pepo (Zucchini)carcpeB1078
Carg10597CsGy2G019060Cucumber (Gy14) v2carcgybB0766
Carg10597MELO3C010876.2Melon (DHL92) v3.6.1carmedB0779
Carg10597MELO3C016745.2Melon (DHL92) v3.6.1carmedB0781
Carg10597CsaV3_4G034250Cucumber (Chinese Long) v3carcucB0810
Carg10597CsaV3_2G027850Cucumber (Chinese Long) v3carcucB0809
Carg10597Cla97C05G101420Watermelon (97103) v2carwmbB0807
Carg10597Cla97C08G159420Watermelon (97103) v2carwmbB0812
Carg10597Bhi04G000312Wax gourdcarwgoB0902
Carg10597Bhi09G002739Wax gourdcarwgoB0905
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10597Carg08773Silver-seed gourdcarcarB124
Carg10597Carg11845Silver-seed gourdcarcarB224
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10597Bottle gourd (USVL1VR-Ls)carlsiB706
Carg10597Silver-seed gourdcarcarB427
Carg10597Silver-seed gourdcarcarB606
Carg10597Cucumber (Gy14) v2carcgybB0767
Carg10597Cucumber (Gy14) v2carcgybB0768
Carg10597Cucumber (Gy14) v1carcgyB0871
Carg10597Cucumber (Gy14) v1carcgyB0872
Carg10597Cucumber (Gy14) v1carcgyB0873
Carg10597Cucurbita maxima (Rimu)carcmaB1065
Carg10597Cucurbita maxima (Rimu)carcmaB1071
Carg10597Cucurbita maxima (Rimu)carcmaB1073
Carg10597Cucurbita moschata (Rifu)carcmoB1047
Carg10597Cucurbita pepo (Zucchini)carcpeB1079
Carg10597Cucurbita pepo (Zucchini)carcpeB1082
Carg10597Cucurbita pepo (Zucchini)carcpeB1083
Carg10597Wild cucumber (PI 183967)carcpiB0810
Carg10597Melon (DHL92) v3.5.1carmeB0769
Carg10597Watermelon (Charleston Gray)carwcgB0745
Carg10597Watermelon (Charleston Gray)carwcgB0746
Carg10597Watermelon (97103) v1carwmB0773
Carg10597Watermelon (97103) v2carwmbB0803
Carg10597Watermelon (97103) v2carwmbB0805