Cp4.1LG11g01520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g01520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCp4.1LG11 : 873790 .. 874068 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAACTCCAAAAGCAAAACTTACAAACGAGTTCTTGTTCCATTCTCAGAGGAGCAACTAGCTAGCGTTTTCAAAAACCACGACGGAGATGGTGATGGAAAGCTAACAAAGGAGGAGTTGAAGCAAGCCTTCGACTATCTTGGTTCACGCTTCAGCTCGTTCAGAGTAGAAGAGGCACTACGTGCCGCTGATATCGACGGTGATGGTTTCATAAGCATGGCCGAGATGGACAAGCTAATTCAATATGCCAAAAGTCGTAAATACACTCTTTGTTAA

mRNA sequence

ATGGGGAACTCCAAAAGCAAAACTTACAAACGAGTTCTTGTTCCATTCTCAGAGGAGCAACTAGCTAGCGTTTTCAAAAACCACGACGGAGATGGTGATGGAAAGCTAACAAAGGAGGAGTTGAAGCAAGCCTTCGACTATCTTGGTTCACGCTTCAGCTCGTTCAGAGTAGAAGAGGCACTACGTGCCGCTGATATCGACGGTGATGGTTTCATAAGCATGGCCGAGATGGACAAGCTAATTCAATATGCCAAAAGTCGTAAATACACTCTTTGTTAA

Coding sequence (CDS)

ATGGGGAACTCCAAAAGCAAAACTTACAAACGAGTTCTTGTTCCATTCTCAGAGGAGCAACTAGCTAGCGTTTTCAAAAACCACGACGGAGATGGTGATGGAAAGCTAACAAAGGAGGAGTTGAAGCAAGCCTTCGACTATCTTGGTTCACGCTTCAGCTCGTTCAGAGTAGAAGAGGCACTACGTGCCGCTGATATCGACGGTGATGGTTTCATAAGCATGGCCGAGATGGACAAGCTAATTCAATATGCCAAAAGTCGTAAATACACTCTTTGTTAA

Protein sequence

MGNSKSKTYKRVLVPFSEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAEMDKLIQYAKSRKYTLC
Homology
[Close]
BLAST of Cp4.1LG11g01520 vs. Swiss-Prot
Match: CML37_ARATH (Calcium-binding protein CML37 OS=Arabidopsis thaliana GN=CML37 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 

Query: 20  QLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAEMDK 79
           +L +VF   D + DGK++ EEL+     LG   SS  VEE ++ +D+DGDGFI   E  K
Sbjct: 49  ELRTVFDYMDANSDGKISGEELQSCVSLLGGALSSREVEEVVKTSDVDGDGFIDFEEFLK 108

Query: 80  LIQ 83
           L++
Sbjct: 109 LME 111

[Close]
BLAST of Cp4.1LG11g01520 vs. Swiss-Prot
Match: CALM_PLAFA (Calmodulin OS=Plasmodium falciparum PE=3 SV=4)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 17  SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
           +EE+L   F+  D DGDG ++ +EL+     LG + ++  V+E +R ADIDGDG I+  E
Sbjct: 82  TEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEE 141

Query: 77  MDKLI 82
             K++
Sbjct: 142 FVKMM 146

[Close]
BLAST of Cp4.1LG11g01520 vs. Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 17  SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
           SEE++   FK  D DG+G ++  EL+     LG + S   VEE +R AD+DGDG I+  E
Sbjct: 82  SEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLSEDEVEEMIREADVDGDGQINYEE 141

Query: 77  MDKLI 82
             K++
Sbjct: 142 FVKMM 146

[Close]
BLAST of Cp4.1LG11g01520 vs. Swiss-Prot
Match: CALM_PLAF7 (Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 17  SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
           +EE+L   F+  D DGDG ++ +EL+     LG + ++  V+E +R ADIDGDG I+  E
Sbjct: 82  TEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEE 141

Query: 77  MDKLI 82
             K++
Sbjct: 142 FVKMM 146

[Close]
BLAST of Cp4.1LG11g01520 vs. Swiss-Prot
Match: CALM_PNECA (Calmodulin OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 17  SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
           SEE++   FK  D DG+G ++  EL+     LG + +   V+E +R AD+DGDG I  +E
Sbjct: 84  SEEEIREAFKVFDKDGNGIISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGVIDYSE 143

Query: 77  MDKLI 82
             K++
Sbjct: 144 FVKMM 148

[Close]
BLAST of Cp4.1LG11g01520 vs. TrEMBL
Match: A0A0A0LRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357340 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-35
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MGNSKSKTYKRVLVPFSEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEA 60
          MGNSKSKTYKRVLVPFSEEQLA+VFKNHD DGDG LTKEELKQAF+YLGSRF +FRVEEA
Sbjct: 1  MGNSKSKTYKRVLVPFSEEQLANVFKNHDRDGDGHLTKEELKQAFEYLGSRFCNFRVEEA 60

Query: 61 LRAADIDGDGFISMAEMDKLIQYAKSRKYTL 92
          LRAAD +GDG ISM EM KLI+YAK+RKYT+
Sbjct: 61 LRAADTNGDGVISMDEMGKLIKYAKTRKYTI 91

[Close]
BLAST of Cp4.1LG11g01520 vs. TrEMBL
Match: A0A0A0L4V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639740 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.2e-18
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 9  YKRVLVPFSEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDG 68
          YKR  VPFS +QL  +F  HDGDGDG+L++ ELK AF+ LGS +S FR  ++L+AAD DG
Sbjct: 14 YKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFESLGSNWSRFRARQSLKAADADG 73

Query: 69 DGFISMAEMDKLIQYAKSRKYTL 92
          DG++++ E+D+L+ YA   +Y +
Sbjct: 74 DGYVTLDELDRLLDYAVRCEYAI 96

[Close]
BLAST of Cp4.1LG11g01520 vs. TrEMBL
Match: A0A0A0LP43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357350 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 1 

Query: 1  MGNSKSKTYKRVLVPFSEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEA 60
          MG S    +K      +E ++A VFKNHD DGDG+LTKEELK AF YLG +F++FRV +A
Sbjct: 1  MGTSNGLIFKCFPASLTEFEVAKVFKNHDKDGDGRLTKEELKSAFKYLGYKFTTFRVHQA 60

Query: 61 LRAADIDGDGFISMAEMDKLIQY 84
          L AAD + D  IS  EM KLI Y
Sbjct: 61 LHAADDNCDDVISFEEMSKLIMY 83

[Close]
BLAST of Cp4.1LG11g01520 vs. TrEMBL
Match: A0A0A0LL93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357850 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 17 SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
          SEEQLA +FK HD D D KLTKEEL +AF+YLGSR+++ RV+EA+RA D + DG IS+ E
Sbjct: 9  SEEQLAWIFKKHDIDRDRKLTKEELTRAFNYLGSRWTALRVKEAIRAVDANHDGVISLDE 68

Query: 77 MDKLIQYAK 86
          M KLI Y K
Sbjct: 69 MSKLIVYVK 77

[Close]
BLAST of Cp4.1LG11g01520 vs. TrEMBL
Match: A0A067L1J7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04285 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.8e-14
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 17 SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
          +EEQL ++FK HD +GDG+L+K+E+K AF  LGSR   +RV  AL+ AD DGDG IS++E
Sbjct: 15 TEEQLKAIFKEHDTNGDGRLSKDEIKLAFQQLGSRLPGWRVRRALKHADADGDGTISVSE 74

Query: 77 MDKLIQYAKSRKYTL 92
          +D+L++YA    Y++
Sbjct: 75 LDELVKYAVRFGYSI 89

[Close]
BLAST of Cp4.1LG11g01520 vs. TAIR10
Match: AT5G42380.1 (AT5G42380.1 calmodulin like 37)

HSP 1 Score: 56.6 bits (135), Expect = 9.3e-09
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 

Query: 20  QLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAEMDK 79
           +L +VF   D + DGK++ EEL+     LG   SS  VEE ++ +D+DGDGFI   E  K
Sbjct: 49  ELRTVFDYMDANSDGKISGEELQSCVSLLGGALSSREVEEVVKTSDVDGDGFIDFEEFLK 108

Query: 80  LIQ 83
           L++
Sbjct: 109 LME 111

[Close]
BLAST of Cp4.1LG11g01520 vs. TAIR10
Match: AT4G04695.1 (AT4G04695.1 calcium-dependent protein kinase 31)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-07
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 1 

Query: 1   MGNSKSKTYKRVLVPFSEEQ---LASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRV 60
           M   K    K +    SEE+   L ++F N D D  G +T EELK     LGS  S   V
Sbjct: 314 MNKLKKVALKVIAANLSEEEIKGLKTLFTNIDTDKSGTITLEELKTGLTRLGSNLSKTEV 373

Query: 61  EEALRAADIDGDGFISMAE 77
           E+ + AAD+DG+G I + E
Sbjct: 374 EQLMEAADVDGNGTIDIDE 392

[Close]
BLAST of Cp4.1LG11g01520 vs. TAIR10
Match: AT4G04720.1 (AT4G04720.1 calcium-dependent protein kinase 21)

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 1 

Query: 1   MGNSKSKTYKRVLVPFSEEQ---LASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRV 60
           M   K    K +    SEE+   L ++F N D D  G +T EELK     LGSR S   V
Sbjct: 362 MNKLKKLALKVIAESLSEEEIKGLKTMFANIDTDKSGTITYEELKTGLTRLGSRLSETEV 421

Query: 61  EEALRAADIDGDGFISMAE 77
           ++ + AAD+DG+G I   E
Sbjct: 422 KQLMEAADVDGNGTIDYYE 440

[Close]
BLAST of Cp4.1LG11g01520 vs. TAIR10
Match: AT4G04700.1 (AT4G04700.1 calcium-dependent protein kinase 27)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 9   YKRVLVPF-----SEEQ---LASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEA 68
           +K+V++ F     SEE+   L ++F N D D  G +T EELK     LGS  S   VE+ 
Sbjct: 317 FKKVVLKFIAANLSEEEIKGLKTLFTNIDTDKSGNITLEELKTGLTRLGSNLSKTEVEQL 376

Query: 69  LRAADIDGDGFISMAE 77
           + AAD+DG+G I + E
Sbjct: 377 MEAADMDGNGTIDIDE 392

[Close]
BLAST of Cp4.1LG11g01520 vs. TAIR10
Match: AT3G51920.1 (AT3G51920.1 calmodulin 9)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 1 

Query: 17  SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
           + ++L  VF+  D DGDG +++ EL +    +G + ++   E  +R AD+DGDGF+S  E
Sbjct: 82  ASDELIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGFLSFHE 141

Query: 77  MDKLI 82
             K++
Sbjct: 142 FSKMM 146

[Close]
BLAST of Cp4.1LG11g01520 vs. NCBI nr
Match: gi|700207392|gb|KGN62511.1| (hypothetical protein Csa_2G357340 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-35
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MGNSKSKTYKRVLVPFSEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEA 60
          MGNSKSKTYKRVLVPFSEEQLA+VFKNHD DGDG LTKEELKQAF+YLGSRF +FRVEEA
Sbjct: 1  MGNSKSKTYKRVLVPFSEEQLANVFKNHDRDGDGHLTKEELKQAFEYLGSRFCNFRVEEA 60

Query: 61 LRAADIDGDGFISMAEMDKLIQYAKSRKYTL 92
          LRAAD +GDG ISM EM KLI+YAK+RKYT+
Sbjct: 61 LRAADTNGDGVISMDEMGKLIKYAKTRKYTI 91

[Close]
BLAST of Cp4.1LG11g01520 vs. NCBI nr
Match: gi|700200028|gb|KGN55186.1| (hypothetical protein Csa_4G639740 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 6.0e-18
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 9  YKRVLVPFSEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDG 68
          YKR  VPFS +QL  +F  HDGDGDG+L++ ELK AF+ LGS +S FR  ++L+AAD DG
Sbjct: 14 YKRCPVPFSRDQLRDIFLKHDGDGDGRLSRLELKSAFESLGSNWSRFRARQSLKAADADG 73

Query: 69 DGFISMAEMDKLIQYAKSRKYTL 92
          DG++++ E+D+L+ YA   +Y +
Sbjct: 74 DGYVTLDELDRLLDYAVRCEYAI 96

[Close]
BLAST of Cp4.1LG11g01520 vs. NCBI nr
Match: gi|700207393|gb|KGN62512.1| (hypothetical protein Csa_2G357350 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 1 

Query: 1  MGNSKSKTYKRVLVPFSEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEA 60
          MG S    +K      +E ++A VFKNHD DGDG+LTKEELK AF YLG +F++FRV +A
Sbjct: 1  MGTSNGLIFKCFPASLTEFEVAKVFKNHDKDGDGRLTKEELKSAFKYLGYKFTTFRVHQA 60

Query: 61 LRAADIDGDGFISMAEMDKLIQY 84
          L AAD + D  IS  EM KLI Y
Sbjct: 61 LHAADDNCDDVISFEEMSKLIMY 83

[Close]
BLAST of Cp4.1LG11g01520 vs. NCBI nr
Match: gi|659087772|ref|XP_008444628.1| (PREDICTED: probable calcium-binding protein CML18 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-15
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 17  SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
           SEEQLA +FK HD D D KLTKEEL +AFDYLGSR+++ RV+ ALRA D +GDG ISM E
Sbjct: 43  SEEQLAWIFKKHDIDRDRKLTKEELARAFDYLGSRWTARRVKGALRAVDANGDGVISMDE 102

Query: 77  MDKLIQYAK 86
           M KLI Y K
Sbjct: 103 MSKLIVYVK 111

[Close]
BLAST of Cp4.1LG11g01520 vs. NCBI nr
Match: gi|700207394|gb|KGN62513.1| (hypothetical protein Csa_2G357850 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 17 SEEQLASVFKNHDGDGDGKLTKEELKQAFDYLGSRFSSFRVEEALRAADIDGDGFISMAE 76
          SEEQLA +FK HD D D KLTKEEL +AF+YLGSR+++ RV+EA+RA D + DG IS+ E
Sbjct: 9  SEEQLAWIFKKHDIDRDRKLTKEELTRAFNYLGSRWTALRVKEAIRAVDANHDGVISLDE 68

Query: 77 MDKLIQYAK 86
          M KLI Y K
Sbjct: 69 MSKLIVYVK 77

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g01520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CML37_ARATH1.6e-0742.86Calcium-binding protein CML37 OS=Arabidopsis thaliana GN=CML37 PE=2 SV=1[more]
CALM_PLAFA4.8e-0740.00Calmodulin OS=Plasmodium falciparum PE=3 SV=4[more]
CALM_BLAEM4.8e-0741.54Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3[more]
CALM_PLAF74.8e-0740.00Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2[more]
CALM_PNECA1.4e-0638.46Calmodulin OS=Pneumocystis carinii PE=3 SV=1[more]
BLAST of Cp4.1LG11g01520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRB6_CUCSA2.9e-3584.62Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357340 PE=4 SV=1[more]
A0A0A0L4V0_CUCSA4.2e-1851.81Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639740 PE=4 SV=1[more]
A0A0A0LP43_CUCSA1.1e-1555.42Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357350 PE=4 SV=1[more]
A0A0A0LL93_CUCSA1.3e-1463.77Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357850 PE=4 SV=1[more]
A0A067L1J7_JATCU4.8e-1452.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04285 PE=4 SV=1[more]
BLAST of Cp4.1LG11g01520 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42380.19.3e-0942.86 calmodulin like 37[more]
AT4G04695.11.3e-0739.24 calcium-dependent protein kinase 31[more]
AT4G04720.12.3e-0739.24 calcium-dependent protein kinase 21[more]
AT4G04700.13.0e-0740.79 calcium-dependent protein kinase 27[more]
AT3G51920.13.0e-0735.38 calmodulin 9[more]
BLAST of Cp4.1LG11g01520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207392|gb|KGN62511.1|4.2e-3584.62hypothetical protein Csa_2G357340 [Cucumis sativus][more]
gi|700200028|gb|KGN55186.1|6.0e-1851.81hypothetical protein Csa_4G639740 [Cucumis sativus][more]
gi|700207393|gb|KGN62512.1|1.6e-1555.42hypothetical protein Csa_2G357350 [Cucumis sativus][more]
gi|659087772|ref|XP_008444628.1|2.1e-1568.12PREDICTED: probable calcium-binding protein CML18 [Cucumis melo][more]
gi|700207394|gb|KGN62513.1|1.8e-1463.77hypothetical protein Csa_2G357850 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g01520.1Cp4.1LG11g01520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 18..81
score: 6.5
IPR002048EF-hand domainSMARTSM00054efh_1coord: 20..48
score: 0.36coord: 56..84
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 16..51
score: 14.486coord: 52..87
score: 10
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 17..82
score: 1.0
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 8..81
score: 2.0
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 65..77
score: -coord: 29..41
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 13..84
score: 9.2
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 13..84
score: 9.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g01520Cucsa.232910Cucumber (Gy14) v1cgycpeB0611
Cp4.1LG11g01520CmaCh01G018470Cucurbita maxima (Rimu)cmacpeB460
Cp4.1LG11g01520CmaCh05G001890Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g01520CmaCh09G002210Cucurbita maxima (Rimu)cmacpeB030
Cp4.1LG11g01520CmaCh12G005460Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g01520CmoCh12G004910Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g01520CmoCh05G001880Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g01520CmoCh09G002130Cucurbita moschata (Rifu)cmocpeB006
Cp4.1LG11g01520CmoCh01G019060Cucurbita moschata (Rifu)cmocpeB420
Cp4.1LG11g01520Cla020682Watermelon (97103) v1cpewmB108
Cp4.1LG11g01520Cla022569Watermelon (97103) v1cpewmB101
Cp4.1LG11g01520Csa2G357340Cucumber (Chinese Long) v2cpecuB096
Cp4.1LG11g01520Csa4G639730Cucumber (Chinese Long) v2cpecuB116
Cp4.1LG11g01520MELO3C016746Melon (DHL92) v3.5.1cpemeB107
Cp4.1LG11g01520MELO3C010863Melon (DHL92) v3.5.1cpemeB091
Cp4.1LG11g01520ClCG05G019800Watermelon (Charleston Gray)cpewcgB113
Cp4.1LG11g01520ClCG08G015910Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g01520CSPI02G19130Wild cucumber (PI 183967)cpecpiB092
Cp4.1LG11g01520CSPI04G24010Wild cucumber (PI 183967)cpecpiB112
Cp4.1LG11g01520Lsi08G014680Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g01520Lsi04G015700Bottle gourd (USVL1VR-Ls)cpelsiB085
Cp4.1LG11g01520MELO3C016746.2Melon (DHL92) v3.6.1cpemedB132
Cp4.1LG11g01520MELO3C010865.2Melon (DHL92) v3.6.1cpemedB115
Cp4.1LG11g01520CsaV3_2G027840Cucumber (Chinese Long) v3cpecucB0106
Cp4.1LG11g01520CsaV3_4G034250Cucumber (Chinese Long) v3cpecucB0127
Cp4.1LG11g01520Bhi09G002738Wax gourdcpewgoB0157
Cp4.1LG11g01520Bhi04G000317Wax gourdcpewgoB0141
Cp4.1LG11g01520CsGy4G022320Cucumber (Gy14) v2cgybcpeB478
Cp4.1LG11g01520CsGy2G019050Cucumber (Gy14) v2cgybcpeB161
Cp4.1LG11g01520Carg11845Silver-seed gourdcarcpeB0263
Cp4.1LG11g01520Carg26146Silver-seed gourdcarcpeB0112
Cp4.1LG11g01520Carg08773Silver-seed gourdcarcpeB0152
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g01520Cp4.1LG06g01580Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG11g01520Cp4.1LG07g05230Cucurbita pepo (Zucchini)cpecpeB146
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g01520Cucumber (Gy14) v2cgybcpeB719
Cp4.1LG11g01520Melon (DHL92) v3.6.1cpemedB135
Cp4.1LG11g01520Silver-seed gourdcarcpeB0556
Cp4.1LG11g01520Silver-seed gourdcarcpeB1078
Cp4.1LG11g01520Cucumber (Chinese Long) v3cpecucB0136
Cp4.1LG11g01520Wax gourdcpewgoB0150
Cp4.1LG11g01520Cucurbita pepo (Zucchini)cpecpeB062
Cp4.1LG11g01520Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG11g01520Cucurbita moschata (Rifu)cmocpeB809