Carg08111 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08111
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glucose-repressible alcohol dehydrogenase transcriptional effector like
Location	Cucurbita_argyrosperma_scaffold_050 : 779051 .. 779254 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATGGACAAGAGCGCGAGCGTCAAGATTGAAATCCGTAGCCAAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCGATCGTAAAGTTTCTTAG

mRNA sequence

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATGGACAAGAGCGCGAGCGTCAAGATTGAAATCCGTAGCCAAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCGATCGTAAAGTTTCTTAG

Coding sequence (CDS)

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATGGACAAGAGCGCGAGCGTCAAGATTGAAATCCGTAGCCAAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCGATCGTAAAGTTTCTTAG

Protein sequence

MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADRPGDRKVS

Homology

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_022941983.1 (uncharacterized protein LOC111447190 [Cucurbita moschata] >XP_022941984.1 uncharacterized protein LOC111447190 [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 8.0e-24
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR
Sbjct: 5  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 64

Query: 61 PGDRKVS 68
          PGDR VS
Sbjct: 65 PGDRTVS 71

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_023530681.1 (uncharacterized protein LOC111793132 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.2 bits (287), Expect = 8.8e-23
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRS+KARLLIDKTLKVADR
Sbjct: 5  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSRKARLLIDKTLKVADR 64

Query: 61 PGDRKV 67
          PGDR V
Sbjct: 65 PGDRTV 70

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_008454414.1 (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 102.4 bits (254), Expect = 5.9e-19
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_022149139.1 (uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncharacterized protein LOC111017632 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-19
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPY+KMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. NCBI nr
Match: XP_004150261.1 (PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical protein Csa_4G000640 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KAR LIDKT+KVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. TAIR10
Match: AT3G19660.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-13
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          M  QL +L+E+IKSKV  LRK KK+   YIKMDKS+SV++ IR +K R LIDKTLKVADR
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKT---YIKMDKSSSVRVAIRRKKTRDLIDKTLKVADR 60

Query: 61 PGDR 65
          PG R
Sbjct: 61 PGKR 61

[Close]

BLAST of Carg08111 vs. TrEMBL
Match: tr|A0A1S3BZS5|A0A1S3BZS5_CUCME (uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-19
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. TrEMBL
Match: tr|E5GBH1|E5GBH1_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-19
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KARLLIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. TrEMBL
Match: tr|A0A0A0KT27|A0A0A0KT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKVKAL   KKSKKPYIKMDKS+SVK+EIRS+KAR LIDKT+KVADR
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRTIS 64

[Close]

BLAST of Carg08111 vs. TrEMBL
Match: tr|A0A2R6Q5S6|A0A2R6Q5S6_ACTCH (Cyclin-dependent kinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc21042 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-17
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQLGNLVESIKSKV++L   KKSKKPY+KMDK ASVK+EIRS++AR LIDKTLKVADR
Sbjct: 1  MANQLGNLVESIKSKVRSL---KKSKKPYVKMDKRASVKVEIRSRQARKLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R VS
Sbjct: 61 PGKRSVS 64

[Close]

BLAST of Carg08111 vs. TrEMBL
Match: tr|A0A2C9V4E8|A0A2C9V4E8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G086400 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-17
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKARLLIDKTLKVADR 60
          MANQL NLVESIKSKV+AL   KKSKKPY+KMDKS+SVK+EIRS+KAR LIDKTLKVADR
Sbjct: 1  MANQLENLVESIKSKVRAL---KKSKKPYVKMDKSSSVKVEIRSRKARKLIDKTLKVADR 60

Query: 61 PGDRKVS 68
          PG R +S
Sbjct: 61 PGKRSIS 64

The following BLAST results are available for this feature:

BLAST of Carg08111 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941983.1	8.0e-24	98.51	uncharacterized protein LOC111447190 [Cucurbita moschata] >XP_022941984.1 unchar...	[more]
XP_023530681.1	8.8e-23	96.97	uncharacterized protein LOC111793132 [Cucurbita pepo subsp. pepo]	[more]
XP_008454414.1	5.9e-19	86.57	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypot...	[more]
XP_022149139.1	7.7e-19	85.07	uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncha...	[more]
XP_004150261.1	2.9e-18	83.58	PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hy...	[more]

BLAST of Carg08111 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19660.1	4.5e-13	65.63	unknown protein	[more]

BLAST of Carg08111 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08111 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZS5\|A0A1S3BZS5_CUCME	3.9e-19	86.57	uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=...	[more]
tr\|E5GBH1\|E5GBH1_CUCME	3.9e-19	86.57	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KT27\|A0A0A0KT27_CUCSA	1.9e-18	83.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1	[more]
tr\|A0A2R6Q5S6\|A0A2R6Q5S6_ACTCH	3.7e-17	80.60	Cyclin-dependent kinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY0...	[more]
tr\|A0A2C9V4E8\|A0A2C9V4E8_MANES	3.7e-17	80.60	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G086400 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08111-RA	Carg08111-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563:SF2	SUBFAMILY NOT NAMED	coord: 1..66
None	No IPR available	PANTHER	PTHR34563	FAMILY NOT NAMED	coord: 1..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08111	Cla006450	Watermelon (97103) v1	carwmB0366
Carg08111	Csa4G000640	Cucumber (Chinese Long) v2	carcuB0402
Carg08111	MELO3C018020	Melon (DHL92) v3.5.1	carmeB0383
Carg08111	ClCG10G010080	Watermelon (Charleston Gray)	carwcgB0365
Carg08111	CSPI04G00150	Wild cucumber (PI 183967)	carcpiB0407
Carg08111	Cucsa.298440	Cucumber (Gy14) v1	carcgyB0439
Carg08111	CmaCh04G004380	Cucurbita maxima (Rimu)	carcmaB0529
Carg08111	CmaCh16G003090	Cucurbita maxima (Rimu)	carcmaB0526
Carg08111	CmoCh04G004680	Cucurbita moschata (Rifu)	carcmoB0514
Carg08111	CmoCh16G003280	Cucurbita moschata (Rifu)	carcmoB0509
Carg08111	Cp4.1LG14g04570	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08111	Cp4.1LG01g02800	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08111	CsGy4G000160	Cucumber (Gy14) v2	carcgybB0383
Carg08111	MELO3C018020.2	Melon (DHL92) v3.6.1	carmedB0387
Carg08111	CsaV3_4G000120	Cucumber (Chinese Long) v3	carcucB0406
Carg08111	Bhi11G000919	Wax gourd	carwgoB0456

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08111	Carg19697	Silver-seed gourd	carcarB324

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08111	Silver-seed gourd	carcarB401
Carg08111	Silver-seed gourd	carcarB402
Carg08111	Silver-seed gourd	carcarB404
Carg08111	Cucumber (Gy14) v2	carcgybB0388
Carg08111	Cucumber (Gy14) v2	carcgybB0389
Carg08111	Cucumber (Gy14) v1	carcgyB0433
Carg08111	Cucurbita maxima (Rimu)	carcmaB0528
Carg08111	Cucurbita maxima (Rimu)	carcmaB0525
Carg08111	Cucurbita moschata (Rifu)	carcmoB0508
Carg08111	Cucurbita moschata (Rifu)	carcmoB0516
Carg08111	Cucurbita pepo (Zucchini)	carcpeB0526
Carg08111	Cucurbita pepo (Zucchini)	carcpeB0529
Carg08111	Cucumber (Chinese Long) v2	carcuB0407
Carg08111	Cucumber (Chinese Long) v2	carcuB0409
Carg08111	Cucumber (Chinese Long) v2	carcuB0410
Carg08111	Cucumber (Chinese Long) v3	carcucB0410
Carg08111	Bottle gourd (USVL1VR-Ls)	carlsiB340
Carg08111	Bottle gourd (USVL1VR-Ls)	carlsiB341
Carg08111	Bottle gourd (USVL1VR-Ls)	carlsiB342
Carg08111	Melon (DHL92) v3.5.1	carmeB0386
Carg08111	Melon (DHL92) v3.6.1	carmedB0390
Carg08111	Watermelon (Charleston Gray)	carwcgB0368
Carg08111	Watermelon (97103) v1	carwmB0375
Carg08111	Watermelon (97103) v2	carwmbB0391
Carg08111	Watermelon (97103) v2	carwmbB0394
Carg08111	Wax gourd	carwgoB0466