MELO3C018020.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018020.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	At3g19660
Location	chr07 : 28662900 .. 28663922 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATAAATGGAACCCCAAGAAGAGCCTCTTCGCTGCTACCCAATAAATCAAAACACATTACTCCTAAACCAAAACCAAACCCATTATTCAATCTCTTCCTTCATTTTTTAATCGCTCTTTACTTCAATGGCCAATCAGCTGGGGAATTTAGTGGAATCTATTAAATCCAAGGTGAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTGTTGATCGATAAAACCCTGAAAGTCGCGGATCGTCCTGGCAAACGTACAATTTCTTAGCCCAAACTCACTCACTCATTCAGGTCTTTTCTTTTCTTTTCATCATCACTTCCTATTTTTGTTCTCTCTCTTATCTCATCTTCGCCTTCTCAAATCAATTGTGTCCAATCTTAGTTTTCCTTTCTCCCTTCATCATTATGTACCTTCCGATTCTGTGTGATACTCAGATCAGATCGGTTTAAATATTATTTTAGTCTACTTTTAGTTTTGGGACAGTGTACTCTCAATCAATCAGGTTCGTTTTGGTTCTTGTAATTAGTATTCCTTTAAAAAATAGTATTTAAACCATCTCGATATGGAACCGTTTCGGAAACTTTGTAATTAATTATGAATCACACAGTATGAAGTATTACCAATTTGGTCTTGGGTGTTCTATCTTGTGACTCGCATACTTTCATTGCCTGGATTGATTTGAAATGAAGTGAGATGTGTTTTCCTGAAGGGAATTTGAATGAAATGAGTTTGTTGAATAAAAAGAAACAAAAGTGTAAGGGGTTTGTGATTGGGAAAATGAATTGCAATTAAGGAAGGACGAACGACATGGACGGCGGCCCGCCCAATTACGCCACTCTCCATTCTTCATAATTCTAATTAAATAATTGTCAAACTCAAACACACACATTATTTTTATTTTTATTTTTATTTTATTACGCATTCTTTCATCTCCAAAGT

mRNA sequence

CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATAAATGGAACCCCAAGAAGAGCCTCTTCGCTGCTACCCAATAAATCAAAACACATTACTCCTAAACCAAAACCAAACCCATTATTCAATCTCTTCCTTCATTTTTTAATCGCTCTTTACTTCAATGGCCAATCAGCTGGGGAATTTAGTGGAATCTATTAAATCCAAGGTGAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTGTTGATCGATAAAACCCTGAAAGTCGCGGATCGTCCTGGCAAACGTACAATTTCTTAGCCCAAACTCACTCACTCATTCAGGTCTTTTCTTTTCTTTTCATCATCACTTCCTATTTTTGTTCTCTCTCTTATCTCATCTTCGCCTTCTCAAATCAATTGTGTCCAATCTTAGTTTTCCTTTCTCCCTTCATCATTATGTACCTTCCGATTCTGTGTGATACTCAGATCAGATCGGTTTAAATATTATTTTAGTCTACTTTTAGTTTTGGGACAGTGTACTCTCAATCAATCAGGTTCGTTTTGGTTCTTGTAATTAGTATTCCTTTAAAAAATAGTATTTAAACCATCTCGATATGGAACCGTTTCGGAAACTTTGTAATTAATTATGAATCACACAGTATGAAGTATTACCAATTTGGTCTTGGGTGTTCTATCTTGTGACTCGCATACTTTCATTGCCTGGATTGATTTGAAATGAAGTGAGATGTGTTTTCCTGAAGGGAATTTGAATGAAATGAGTTTGTTGAATAAAAAGAAACAAAAGTGTAAGGGGTTTGTGATTGGGAAAATGAATTGCAATTAAGGAAGGACGAACGACATGGACGGCGGCCCGCCCAATTACGCCACTCTCCATTCTTCATAATTCTAATTAAATAATTGTCAAACTCAAACACACACATTATTTTTATTTTTATTTTTATTTTATTACGCATTCTTTCATCTCCAAAGT

Coding sequence (CDS)

ATGGCCAATCAGCTGGGGAATTTAGTGGAATCTATTAAATCCAAGGTGAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTGTTGATCGATAAAACCCTGAAAGTCGCGGATCGTCCTGGCAAACGTACAATTTCTTAG

Protein sequence

MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGKRTIS

Homology

[Close]

BLAST of MELO3C018020.2 vs. NCBI nr
Match: XP_008454414.1 (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of MELO3C018020.2 vs. NCBI nr
Match: XP_022149139.1 (uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncharacterized protein LOC111017632 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 8.4e-23
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPY+KMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of MELO3C018020.2 vs. NCBI nr
Match: XP_004150261.1 (PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical protein Csa_4G000640 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of MELO3C018020.2 vs. NCBI nr
Match: XP_022922964.1 (uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 uncharacterized protein LOC111810569 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RT+S
Sbjct: 61 RTVS 64

[Close]

BLAST of MELO3C018020.2 vs. NCBI nr
Match: XP_022984885.1 (uncharacterized protein LOC111483028 [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 3.5e-21
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRK+RLLIDKT+KVADRPGK
Sbjct: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RT+S
Sbjct: 61 RTVS 64

[Close]

BLAST of MELO3C018020.2 vs. TAIR10
Match: AT3G19660.1 (unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-16
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          M  QL +L+E+IKSKV  L+K KK YIKMDKSSSV+V IR +K R LIDKTLKVADRPGK
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGK 60

Query: 61 RTI 64
          RT+
Sbjct: 61 RTL 63

[Close]

BLAST of MELO3C018020.2 vs. TrEMBL
Match: tr|A0A1S3BZS5|A0A1S3BZS5_CUCME (uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of MELO3C018020.2 vs. TrEMBL
Match: tr|E5GBH1|E5GBH1_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of MELO3C018020.2 vs. TrEMBL
Match: tr|A0A0A0KT27|A0A0A0KT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of MELO3C018020.2 vs. TrEMBL
Match: tr|A0A2C9V4E8|A0A2C9V4E8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G086400 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQL NLVESIKSKV+ALKKSKKPY+KMDKSSSVKVEIRSRKAR LIDKTLKVADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYVKMDKSSSVKVEIRSRKARKLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          R+IS
Sbjct: 61 RSIS 64

[Close]

BLAST of MELO3C018020.2 vs. TrEMBL
Match: tr|A0A2C9VLA0|A0A2C9VLA0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G057600 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.5e-20
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQL NL++SIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKTLKVADRPGK
Sbjct: 1  MANQLENLMQSIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARQLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          R++S
Sbjct: 61 RSVS 64

The following BLAST results are available for this feature:

BLAST of MELO3C018020.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454414.1	6.5e-23	100.00	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypot...	[more]
XP_022149139.1	8.4e-23	98.44	uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncha...	[more]
XP_004150261.1	3.2e-22	96.88	PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hy...	[more]
XP_022922964.1	1.6e-21	93.75	uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 unchar...	[more]
XP_022984885.1	3.5e-21	92.19	uncharacterized protein LOC111483028 [Cucurbita maxima]	[more]

BLAST of MELO3C018020.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19660.1	7.1e-16	71.43	unknown protein	[more]

BLAST of MELO3C018020.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C018020.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZS5\|A0A1S3BZS5_CUCME	4.3e-23	100.00	uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=...	[more]
tr\|E5GBH1\|E5GBH1_CUCME	4.3e-23	100.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KT27\|A0A0A0KT27_CUCSA	2.1e-22	96.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1	[more]
tr\|A0A2C9V4E8\|A0A2C9V4E8_MANES	1.5e-20	92.19	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G086400 PE=4 SV=...	[more]
tr\|A0A2C9VLA0\|A0A2C9VLA0_MANES	7.5e-20	89.06	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G057600 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018020.2.1	MELO3C018020.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563:SF2	SUBFAMILY NOT NAMED	coord: 1..64
None	No IPR available	PANTHER	PTHR34563	FAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018020.2	Csa4G000640	Cucumber (Chinese Long) v2	cumedB297
MELO3C018020.2	CSPI04G00150	Wild cucumber (PI 183967)	cpimedB301
MELO3C018020.2	Cucsa.298440	Cucumber (Gy14) v1	cgymedB489
MELO3C018020.2	CmaCh16G003090	Cucurbita maxima (Rimu)	cmamedB354
MELO3C018020.2	CmoCh16G003280	Cucurbita moschata (Rifu)	cmomedB342
MELO3C018020.2	CmoCh04G004680	Cucurbita moschata (Rifu)	cmomedB786
MELO3C018020.2	Cp4.1LG14g04570	Cucurbita pepo (Zucchini)	cpemedB243
MELO3C018020.2	Cp4.1LG01g02800	Cucurbita pepo (Zucchini)	cpemedB494
MELO3C018020.2	CsGy4G000160	Cucumber (Gy14) v2	cgybmedB266
MELO3C018020.2	Cla006450	Watermelon (97103) v1	medwmB483
MELO3C018020.2	ClCG10G010080	Watermelon (Charleston Gray)	medwcgB446
MELO3C018020.2	Bhi11G000919	Wax gourd	medwgoB569
MELO3C018020.2	Carg19697	Silver-seed gourd	carmedB0308
MELO3C018020.2	Carg08111	Silver-seed gourd	carmedB0387
MELO3C018020.2	CsaV3_4G000120	Cucumber (Chinese Long) v3	cucmedB307

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018020.2	Cucumber (Gy14) v2	cgybmedB265
MELO3C018020.2	Cucumber (Gy14) v2	cgybmedB498
MELO3C018020.2	Cucumber (Gy14) v1	cgymedB381
MELO3C018020.2	Cucumber (Gy14) v1	cgymedB570
MELO3C018020.2	Cucurbita maxima (Rimu)	cmamedB562
MELO3C018020.2	Cucurbita maxima (Rimu)	cmamedB789
MELO3C018020.2	Cucurbita moschata (Rifu)	cmomedB550
MELO3C018020.2	Cucurbita pepo (Zucchini)	cpemedB286
MELO3C018020.2	Wild cucumber (PI 183967)	cpimedB300
MELO3C018020.2	Wild cucumber (PI 183967)	cpimedB558
MELO3C018020.2	Cucumber (Chinese Long) v2	cumedB295
MELO3C018020.2	Cucumber (Chinese Long) v2	cumedB539
MELO3C018020.2	Melon (DHL92) v3.6.1	medmedB094
MELO3C018020.2	Melon (DHL92) v3.6.1	medmedB151
MELO3C018020.2	Bottle gourd (USVL1VR-Ls)	lsimedB281
MELO3C018020.2	Bottle gourd (USVL1VR-Ls)	lsimedB282
MELO3C018020.2	Watermelon (Charleston Gray)	medwcgB465
MELO3C018020.2	Watermelon (97103) v1	medwmB522
MELO3C018020.2	Cucumber (Chinese Long) v3	cucmedB303
MELO3C018020.2	Cucumber (Chinese Long) v3	cucmedB503
MELO3C018020.2	Cucumber (Chinese Long) v3	cucmedB572
MELO3C018020.2	Watermelon (97103) v2	medwmbB456
MELO3C018020.2	Watermelon (97103) v2	medwmbB469