CsaV3_4G000120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G000120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Glucose-repressible alcohol dehydrogenase transcriptional effector like
Location	chr4 : 99462 .. 100647 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTTGTTTCTTCTTCTTCTATAAATGGAACCCCCTAACACCCTCTTCGCTGCTACTCAATAAAATCATAAACAACGCCCAATCTCTCTTCTCTATCTTTACCCTTCAATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAGCCCAAACTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCAGGTCTTTTCTCTCTCTCTCTCTAATCTCATCTTCGCCTTCTCAAATCAATTGCGTCCAATCTTAGTTTTCCTTTCTTTTTTGTACCTTCCGATTCTGTGTGATACTCAGATCAGATCGGTTTAAATATTATTTTGGTCTACTCTTAGCTTTGATTCACTCTGTAATTTCAAACAGTTCATTTTGGTTATTGTAATTACTACTCCTTCCAAAATTATAAAAACCAAAATGAATATTCTGAAATAATATAGGAACAAAAAAAGAAAAGTGGTGTTTAAACCATCTAGATATGGAACCGTTTCGGAAACTTGTAATTAGTTATTATGAATCACACAGTATGAACTATTACCAATTTGTCTTTGTGTTCTATCTTGGAATCCGCTTACTTTCATTGCCTGATGGATTGATTTGAAATGAAGTGATGAGATGTGTTTTGGGGAAGGAAATTTGAATGAAATGAAGTGTGAGGAGTTTGTGATTGGTGAAATGAATTGCAATTAAGGAAGGACGAACGGCATGGACGGCGGGCCGCCCAATTACTACGCCACTCTCCATTCCTTCATAATTCATATTAAAGTATTCTCAAACTCAAACACACACATTATTTTATTACGCATTCTTTCATCTCCAAAGTCAATTAATTATTGAGCTCTAAAGTATGTGATTTTGTTCCTCTTTTTTCATATTCAACTTTAAATTAAATTGAATGATGCTTCTATCATGTGCTTAATCGACATCATACTATTCTAAAATTAATTAATTGTTGTAACATTGTCTTTGAGGTGGACCATCTTGAATCATGTGGTGGTAAAATCTAGTTCCATCATAGATTTAAACTTCAA

mRNA sequence

ATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAG

Coding sequence (CDS)

ATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAG

Protein sequence

MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGKRTIS

Homology

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_004150261.1 (PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical protein Csa_4G000640 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_008454414.1 (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_022149139.1 (uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncharacterized protein LOC111017632 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPY+KMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_022922964.1 (uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 uncharacterized protein LOC111810569 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-22
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKTMKVADRPGK
Sbjct: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RT+S
Sbjct: 61 RTVS 64

[Close]

BLAST of CsaV3_4G000120 vs. NCBI nr
Match: XP_022984885.1 (uncharacterized protein LOC111483028 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRK+R LIDKTMKVADRPGK
Sbjct: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RT+S
Sbjct: 61 RTVS 64

[Close]

BLAST of CsaV3_4G000120 vs. TAIR10
Match: AT3G19660.1 (unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 4.2e-16
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          M  QL +L+E+IKSKV  L+K KK YIKMDKSSSV+V IR +K R LIDKT+KVADRPGK
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGK 60

Query: 61 RTI 64
          RT+
Sbjct: 61 RTL 63

[Close]

BLAST of CsaV3_4G000120 vs. TrEMBL
Match: tr|A0A0A0KT27|A0A0A0KT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.7e-24
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. TrEMBL
Match: tr|A0A1S3BZS5|A0A1S3BZS5_CUCME (uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.7e-23
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. TrEMBL
Match: tr|E5GBH1|E5GBH1_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.7e-23
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CsaV3_4G000120 vs. TrEMBL
Match: tr|A0A2C9V4E8|A0A2C9V4E8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G086400 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQL NLVESIKSKV+ALKKSKKPY+KMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYVKMDKSSSVKVEIRSRKARKLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          R+IS
Sbjct: 61 RSIS 64

[Close]

BLAST of CsaV3_4G000120 vs. TrEMBL
Match: tr|A0A2C9VLA0|A0A2C9VLA0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G057600 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.7e-20
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQL NL++SIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLENLMQSIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARQLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          R++S
Sbjct: 61 RSVS 64

The following BLAST results are available for this feature:

BLAST of CsaV3_4G000120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150261.1	1.3e-23	100.00	PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hy...	[more]
XP_008454414.1	1.5e-22	96.88	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypot...	[more]
XP_022149139.1	1.9e-22	95.31	uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncha...	[more]
XP_022922964.1	9.5e-22	93.75	uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 unchar...	[more]
XP_022984885.1	2.1e-21	92.19	uncharacterized protein LOC111483028 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G000120 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19660.1	4.2e-16	69.84	unknown protein	[more]

BLAST of CsaV3_4G000120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G000120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KT27\|A0A0A0KT27_CUCSA	8.7e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1	[more]
tr\|A0A1S3BZS5\|A0A1S3BZS5_CUCME	9.7e-23	96.88	uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=...	[more]
tr\|E5GBH1\|E5GBH1_CUCME	9.7e-23	96.88	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A2C9V4E8\|A0A2C9V4E8_MANES	1.5e-20	90.63	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G086400 PE=4 SV=...	[more]
tr\|A0A2C9VLA0\|A0A2C9VLA0_MANES	7.7e-20	87.50	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G057600 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G000120.1	CsaV3_4G000120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563:SF2	SUBFAMILY NOT NAMED	coord: 1..64
None	No IPR available	PANTHER	PTHR34563	FAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G000120	CSPI04G00150	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G000120	Cucsa.298440	Cucumber (Gy14) v1	cgycucB460
CsaV3_4G000120	CmaCh16G003090	Cucurbita maxima (Rimu)	cmacucB0388
CsaV3_4G000120	CmoCh16G003280	Cucurbita moschata (Rifu)	cmocucB0385
CsaV3_4G000120	CmoCh04G004680	Cucurbita moschata (Rifu)	cmocucB0829
CsaV3_4G000120	Cp4.1LG14g04570	Cucurbita pepo (Zucchini)	cpecucB0263
CsaV3_4G000120	Cp4.1LG01g02800	Cucurbita pepo (Zucchini)	cpecucB0499
CsaV3_4G000120	CsGy4G000160	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G000120	Carg19697	Silver-seed gourd	carcucB0328
CsaV3_4G000120	Carg08111	Silver-seed gourd	carcucB0406
CsaV3_4G000120	Cla006450	Watermelon (97103) v1	cucwmB300
CsaV3_4G000120	MELO3C018020	Melon (DHL92) v3.5.1	cucmeB315
CsaV3_4G000120	ClCG10G010080	Watermelon (Charleston Gray)	cucwcgB279
CsaV3_4G000120	MELO3C018020.2	Melon (DHL92) v3.6.1	cucmedB307
CsaV3_4G000120	Bhi11G000919	Wax gourd	cucwgoB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G000120	Cucumber (Chinese Long) v3	cuccucB165
CsaV3_4G000120	Cucumber (Gy14) v2	cgybcucB178
CsaV3_4G000120	Cucumber (Gy14) v2	cgybcucB338
CsaV3_4G000120	Cucumber (Gy14) v1	cgycucB339
CsaV3_4G000120	Cucumber (Gy14) v1	cgycucB537
CsaV3_4G000120	Cucurbita maxima (Rimu)	cmacucB0843
CsaV3_4G000120	Wild cucumber (PI 183967)	cpicucB227
CsaV3_4G000120	Wild cucumber (PI 183967)	cpicucB404
CsaV3_4G000120	Bottle gourd (USVL1VR-Ls)	cuclsiB296
CsaV3_4G000120	Melon (DHL92) v3.5.1	cucmeB282
CsaV3_4G000120	Melon (DHL92) v3.5.1	cucmeB314
CsaV3_4G000120	Melon (DHL92) v3.5.1	cucmeB345
CsaV3_4G000120	Melon (DHL92) v3.6.1	cucmedB275
CsaV3_4G000120	Melon (DHL92) v3.6.1	cucmedB306
CsaV3_4G000120	Watermelon (Charleston Gray)	cucwcgB308
CsaV3_4G000120	Watermelon (97103) v2	cucwmbB273
CsaV3_4G000120	Watermelon (97103) v2	cucwmbB295